Wall clock time and date at job start Sun Mar 29 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32988 * 119.99998 * 2 1 4 4 C 1.50705 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.47109 * 119.99998 * 359.97438 * 3 2 1 6 6 O 1.21614 * 119.99492 * 40.22390 * 5 3 2 7 7 N 1.34776 * 119.99711 * 220.21647 * 5 3 2 8 8 C 1.46495 * 120.00630 * 3.96285 * 7 5 3 9 9 C 1.46504 * 119.99619 * 183.96156 * 7 5 3 10 10 C 1.53495 * 114.20838 * 240.00274 * 9 7 5 11 11 N 1.47068 * 87.98515 * 220.14803 * 10 9 7 12 12 C 1.36936 * 136.05387 * 207.08454 * 11 10 9 13 13 H 1.07996 * 120.00330 * 5.24991 * 12 11 10 14 14 C 1.38810 * 119.99697 * 185.24512 * 12 11 10 15 15 N 1.31620 * 120.00002 * 5.21796 * 14 12 11 16 16 Si 1.86800 * 119.99791 * 185.20971 * 14 12 11 17 17 H 1.48504 * 109.47195 * 265.00149 * 16 14 12 18 18 H 1.48497 * 109.47117 * 25.00655 * 16 14 12 19 19 H 1.48504 * 109.47093 * 145.00410 * 16 14 12 20 20 C 1.47060 * 87.88625 * 27.34264 * 11 10 9 21 21 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47277 * 300.00159 * 1 2 3 23 23 H 1.09001 * 109.47247 * 60.00625 * 1 2 3 24 24 H 1.08003 * 120.00021 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46838 * 266.48891 * 4 3 2 26 26 H 1.08995 * 109.47345 * 26.49281 * 4 3 2 27 27 H 1.08997 * 109.47470 * 146.49518 * 4 3 2 28 28 H 1.08994 * 109.47280 * 263.95539 * 8 7 5 29 29 H 1.09009 * 109.46613 * 23.95788 * 8 7 5 30 30 H 1.08995 * 109.47307 * 143.94929 * 8 7 5 31 31 H 1.09004 * 113.28226 * 13.06931 * 9 7 5 32 32 H 1.09002 * 113.46776 * 105.36796 * 10 9 7 33 33 H 1.08997 * 113.46392 * 334.93147 * 10 9 7 34 34 H 0.96997 * 119.99888 * 180.02562 * 15 14 12 35 35 H 1.08996 * 113.47337 * 87.43570 * 20 11 10 36 36 H 1.09005 * 113.46867 * 217.88020 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1517 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.4356 2.5503 0.6792 7 7 1.8716 3.4547 -0.7543 8 6 3.0258 3.2781 -1.6390 9 6 1.1904 4.7501 -0.6889 10 6 0.6066 5.2226 -2.0276 11 7 1.0611 6.5793 -1.6876 12 6 0.6739 7.8556 -1.9981 13 1 -0.2191 8.0219 -2.5822 14 6 1.4292 8.9355 -1.5620 15 7 2.5707 8.7315 -0.9393 16 14 0.8257 10.6781 -1.8593 17 1 1.4366 11.2078 -3.1049 18 1 -0.6529 10.6733 -1.9962 19 1 1.2138 11.5387 -0.7129 20 6 2.1184 5.9622 -0.8728 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 2.0470 -0.9353 0.0004 25 1 4.0426 1.2144 1.0250 26 1 4.0421 0.2321 -0.4593 27 1 4.0421 2.0087 -0.5678 28 1 3.9269 3.6270 -1.1347 29 1 3.1344 2.2224 -1.8880 30 1 2.8749 3.8531 -2.5525 31 1 0.5027 4.8332 0.1528 32 1 -0.4779 5.1298 -2.0851 33 1 1.1130 4.7998 -2.8952 34 1 3.0983 9.4861 -0.6342 35 1 3.0234 5.7344 -1.4360 36 1 2.3219 6.4995 0.0536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499650281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:36 Heat of formation + Delta-G solvation = 54.578285 kcal Electronic energy + Delta-G solvation = -17287.780981 eV Core-core repulsion = 14582.237893 eV Total energy + Delta-G solvation = -2705.543088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06677 -37.93630 -35.11760 -34.46204 -32.04680 -30.11273 -27.67641 -26.98967 -24.72905 -24.61038 -23.70990 -21.60633 -18.91956 -18.27108 -16.89979 -16.32916 -15.55433 -15.19613 -14.76976 -14.37191 -14.04567 -13.74331 -13.60837 -12.97905 -12.69696 -12.64674 -12.36297 -11.94530 -11.84592 -11.65545 -11.51417 -11.27896 -11.00695 -10.95659 -10.76029 -10.19950 -10.10593 -9.45848 -9.34297 -8.93608 -8.82021 -8.07143 -6.93734 -5.82534 -3.14093 1.56977 3.22703 3.36073 3.40729 3.44543 3.46219 4.44966 4.65404 4.88691 5.20449 5.23769 5.30396 5.36552 5.43896 5.50745 5.58118 5.66909 5.72425 5.78260 5.81401 5.93482 6.02288 6.11684 6.20713 6.45079 6.47987 6.54703 6.61937 6.80708 7.12887 7.32742 7.46968 7.79810 7.91798 8.49291 8.99195 9.65412 10.57932 11.36288 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051210 B = 0.005356 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.631807 B = 5226.399222 C = 5489.120894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.180 4.180 4 C -0.136 4.136 5 C 0.551 3.449 6 O -0.543 6.543 7 N -0.592 5.592 8 C 0.073 3.927 9 C 0.085 3.915 10 C 0.106 3.894 11 N -0.603 5.603 12 C -0.219 4.219 13 H 0.084 0.916 14 C -0.006 4.006 15 N -0.920 5.920 16 Si 0.915 3.085 17 H -0.288 1.288 18 H -0.279 1.279 19 H -0.289 1.289 20 C 0.155 3.845 21 H 0.056 0.944 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.034 0.966 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -16.291 -0.247 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 C -0.183 4.183 4 C -0.192 4.192 5 C 0.340 3.660 6 O -0.422 6.422 7 N -0.324 5.324 8 C -0.070 4.070 9 C -0.019 4.019 10 C -0.022 4.022 11 N -0.329 5.329 12 C -0.346 4.346 13 H 0.101 0.899 14 C -0.203 4.203 15 N -0.566 5.566 16 Si 0.745 3.255 17 H -0.216 1.216 18 H -0.204 1.204 19 H -0.215 1.215 20 C 0.028 3.972 21 H 0.075 0.925 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.138 0.862 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.877 -15.804 0.097 15.915 hybrid contribution 0.040 0.942 -0.337 1.002 sum 1.917 -14.861 -0.239 14.986 Atomic orbital electron populations 1.21009 0.92356 1.01636 1.03984 1.23391 0.96769 0.96441 0.94631 1.21516 0.96616 0.93384 1.06797 1.21337 0.90785 1.03931 1.03124 1.18507 0.84111 0.83768 0.79577 1.90739 1.25763 1.82910 1.42773 1.47848 1.31198 1.11568 1.41776 1.22090 0.88309 1.01913 0.94696 1.23774 0.97652 0.80571 0.99856 1.22809 0.97913 0.86840 0.94594 1.45332 1.33537 0.99313 1.54711 1.18931 1.06330 0.79490 1.29839 0.89866 1.24835 0.96409 0.98020 1.01035 1.69844 1.13269 1.29909 1.43574 0.86059 0.78139 0.84006 0.77308 1.21560 1.20411 1.21518 1.22404 0.91088 0.87474 0.96190 0.92532 0.89311 0.91542 0.86173 0.91431 0.91537 0.89282 0.92033 0.90507 0.90829 0.86395 0.93875 0.94918 0.93534 0.94868 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.75 36.00 0.31 -1.26 16 2 C -0.09 -1.04 9.93 -36.13 -0.36 -1.40 16 3 C -0.18 -2.30 5.06 -102.84 -0.52 -2.82 16 4 C -0.14 -1.33 9.23 36.01 0.33 -1.00 16 5 C 0.55 9.27 6.88 -12.66 -0.09 9.18 16 6 O -0.54 -10.87 14.14 5.26 0.07 -10.80 16 7 N -0.59 -9.95 3.12 -174.95 -0.54 -10.49 16 8 C 0.07 0.96 7.27 59.84 0.43 1.39 16 9 C 0.09 1.74 4.56 -67.67 -0.31 1.43 16 10 C 0.11 2.27 8.26 -8.51 -0.07 2.20 16 11 N -0.60 -15.78 3.77 -184.63 -0.70 -16.48 16 12 C -0.22 -6.21 10.74 -15.06 -0.16 -6.37 16 13 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 15 N -0.92 -27.38 11.73 55.49 0.65 -26.72 16 16 Si 0.92 22.17 29.56 -169.99 -5.02 17.15 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 C 0.16 3.67 6.71 -8.37 -0.06 3.61 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.09 1.25 6.77 -51.93 -0.35 0.90 16 23 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 24 H 0.12 0.99 8.03 -52.48 -0.42 0.57 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.50 8.03 -51.93 -0.42 0.09 16 27 H 0.09 0.86 3.81 -51.93 -0.20 0.66 16 28 H 0.06 0.76 7.23 -51.93 -0.38 0.38 16 29 H 0.08 0.81 5.53 -51.92 -0.29 0.52 16 30 H 0.07 1.03 6.46 -51.93 -0.34 0.69 16 31 H 0.12 2.62 7.32 -51.93 -0.38 2.24 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.67 6.90 -51.93 -0.36 0.31 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.03 0.77 6.69 -51.93 -0.35 0.42 16 36 H 0.07 1.75 7.48 -51.93 -0.39 1.36 16 LS Contribution 289.43 15.07 4.36 4.36 Total: -1.00 -32.54 289.43 -6.85 -39.39 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.09 Total: -1.11 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.58 Total: 4.71 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.59 Total: -53.70 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.54 -6.85 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499650281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.968 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds