Wall clock time and date at job start Sun Mar 29 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32988 * 119.99998 * 2 1 4 4 C 1.50705 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.47109 * 119.99998 * 359.97438 * 3 2 1 6 6 O 1.21614 * 119.99492 * 40.22390 * 5 3 2 7 7 N 1.34776 * 119.99711 * 220.21647 * 5 3 2 8 8 C 1.46495 * 120.00630 * 3.96285 * 7 5 3 9 9 C 1.46504 * 119.99619 * 183.96156 * 7 5 3 10 10 C 1.53495 * 114.20838 * 240.00274 * 9 7 5 11 11 N 1.47068 * 87.98515 * 220.14803 * 10 9 7 12 12 C 1.36936 * 136.05387 * 207.08454 * 11 10 9 13 13 H 1.07996 * 120.00330 * 5.24991 * 12 11 10 14 14 C 1.38810 * 119.99697 * 185.24512 * 12 11 10 15 15 N 1.31620 * 120.00002 * 5.21796 * 14 12 11 16 16 Si 1.86800 * 119.99791 * 185.20971 * 14 12 11 17 17 H 1.48504 * 109.47195 * 265.00149 * 16 14 12 18 18 H 1.48497 * 109.47117 * 25.00655 * 16 14 12 19 19 H 1.48504 * 109.47093 * 145.00410 * 16 14 12 20 20 C 1.47060 * 87.88625 * 27.34264 * 11 10 9 21 21 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47277 * 300.00159 * 1 2 3 23 23 H 1.09001 * 109.47247 * 60.00625 * 1 2 3 24 24 H 1.08003 * 120.00021 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46838 * 266.48891 * 4 3 2 26 26 H 1.08995 * 109.47345 * 26.49281 * 4 3 2 27 27 H 1.08997 * 109.47470 * 146.49518 * 4 3 2 28 28 H 1.08994 * 109.47280 * 263.95539 * 8 7 5 29 29 H 1.09009 * 109.46613 * 23.95788 * 8 7 5 30 30 H 1.08995 * 109.47307 * 143.94929 * 8 7 5 31 31 H 1.09004 * 113.28226 * 13.06931 * 9 7 5 32 32 H 1.09002 * 113.46776 * 105.36796 * 10 9 7 33 33 H 1.08997 * 113.46392 * 334.93147 * 10 9 7 34 34 H 0.96997 * 119.99888 * 180.02562 * 15 14 12 35 35 H 1.08996 * 113.47337 * 87.43570 * 20 11 10 36 36 H 1.09005 * 113.46867 * 217.88020 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1517 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.4356 2.5503 0.6792 7 7 1.8716 3.4547 -0.7543 8 6 3.0258 3.2781 -1.6390 9 6 1.1904 4.7501 -0.6889 10 6 0.6066 5.2226 -2.0276 11 7 1.0611 6.5793 -1.6876 12 6 0.6739 7.8556 -1.9981 13 1 -0.2191 8.0219 -2.5822 14 6 1.4292 8.9355 -1.5620 15 7 2.5707 8.7315 -0.9393 16 14 0.8257 10.6781 -1.8593 17 1 1.4366 11.2078 -3.1049 18 1 -0.6529 10.6733 -1.9962 19 1 1.2138 11.5387 -0.7129 20 6 2.1184 5.9622 -0.8728 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 2.0470 -0.9353 0.0004 25 1 4.0426 1.2144 1.0250 26 1 4.0421 0.2321 -0.4593 27 1 4.0421 2.0087 -0.5678 28 1 3.9269 3.6270 -1.1347 29 1 3.1344 2.2224 -1.8880 30 1 2.8749 3.8531 -2.5525 31 1 0.5027 4.8332 0.1528 32 1 -0.4779 5.1298 -2.0851 33 1 1.1130 4.7998 -2.8952 34 1 3.0983 9.4861 -0.6342 35 1 3.0234 5.7344 -1.4360 36 1 2.3219 6.4995 0.0536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499650281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:36 Heat of formation + Delta-G solvation = 33.105809 kcal Electronic energy + Delta-G solvation = -17288.712097 eV Core-core repulsion = 14582.237893 eV Total energy + Delta-G solvation = -2706.474204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46922 -39.59257 -36.31562 -35.78919 -34.06750 -31.10992 -29.54783 -28.20189 -26.46857 -26.00945 -25.05388 -23.12607 -20.59116 -19.52417 -18.80487 -17.85576 -17.05714 -16.56560 -16.40531 -15.83215 -15.33853 -15.23355 -14.64062 -14.40508 -13.99244 -13.75309 -13.71979 -13.37045 -13.27116 -13.14296 -12.90507 -12.83695 -12.63905 -12.52737 -12.12964 -12.01599 -11.87781 -11.41372 -10.90559 -10.65082 -9.87321 -9.52652 -9.01332 -7.98333 -5.31792 0.56795 1.44740 1.47256 1.56763 1.95315 2.10511 2.47273 3.25056 3.44313 3.60830 3.74652 4.02222 4.18147 4.29201 4.37071 4.43414 4.59557 4.63044 4.69895 4.76785 4.80432 4.85240 4.90791 4.91527 5.07677 5.11820 5.21599 5.29922 5.39063 5.54533 5.62037 5.75262 5.83321 6.49377 6.83847 7.17465 7.51987 8.51026 9.20826 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051210 B = 0.005356 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.631807 B = 5226.399222 C = 5489.120894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.130 4.130 5 C 0.544 3.456 6 O -0.586 6.586 7 N -0.594 5.594 8 C 0.069 3.931 9 C 0.110 3.890 10 C 0.112 3.888 11 N -0.635 5.635 12 C -0.235 4.235 13 H 0.088 0.912 14 C -0.063 4.063 15 N -0.953 5.953 16 Si 0.985 3.015 17 H -0.282 1.282 18 H -0.267 1.267 19 H -0.292 1.292 20 C 0.162 3.838 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.163 0.837 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.251 0.749 35 H 0.041 0.959 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -18.269 -1.195 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.202 4.202 4 C -0.186 4.186 5 C 0.335 3.665 6 O -0.467 6.467 7 N -0.325 5.325 8 C -0.072 4.072 9 C 0.005 3.995 10 C -0.014 4.014 11 N -0.361 5.361 12 C -0.363 4.363 13 H 0.105 0.895 14 C -0.256 4.256 15 N -0.600 5.600 16 Si 0.812 3.188 17 H -0.209 1.209 18 H -0.192 1.192 19 H -0.219 1.219 20 C 0.035 3.965 21 H 0.105 0.895 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.181 0.819 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.522 -17.826 -0.875 18.025 hybrid contribution -0.210 1.447 -0.028 1.462 sum 2.313 -16.380 -0.904 16.567 Atomic orbital electron populations 1.21018 0.93452 1.02925 1.01954 1.23776 0.96216 0.97519 0.91625 1.21539 0.98096 0.91337 1.09236 1.21344 0.88276 1.05549 1.03458 1.19327 0.83770 0.84956 0.78400 1.90721 1.27855 1.83783 1.44358 1.47857 1.31964 1.10074 1.42600 1.22356 0.87056 1.04178 0.93632 1.23042 0.96147 0.81829 0.98498 1.22876 0.98200 0.84670 0.95663 1.45628 1.34580 1.00222 1.55689 1.19327 1.06561 0.80910 1.29500 0.89477 1.25712 0.96695 1.02033 1.01169 1.70017 1.14471 1.30721 1.44834 0.84981 0.78123 0.78762 0.76953 1.20871 1.19206 1.21881 1.22301 0.91564 0.88289 0.94347 0.89536 0.92076 0.92971 0.81946 0.91546 0.88350 0.89402 0.91063 0.86997 0.91589 0.88777 0.93694 0.92725 0.93970 0.94129 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.75 71.23 0.62 -2.38 16 2 C -0.07 -1.36 9.93 24.52 0.24 -1.12 16 3 C -0.20 -4.57 5.06 -18.70 -0.09 -4.66 16 4 C -0.13 -2.07 9.23 71.24 0.66 -1.42 16 5 C 0.54 18.00 6.88 86.57 0.60 18.59 16 6 O -0.59 -23.98 14.14 -4.08 -0.06 -24.04 16 7 N -0.59 -19.64 3.12 -825.66 -2.57 -22.21 16 8 C 0.07 1.68 7.27 127.77 0.93 2.61 16 9 C 0.11 4.60 4.56 45.55 0.21 4.81 16 10 C 0.11 4.83 8.26 83.18 0.69 5.52 16 11 N -0.63 -33.85 3.77 -738.04 -2.78 -36.63 16 12 C -0.24 -13.54 10.74 84.03 0.90 -12.63 16 13 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 14 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 15 N -0.95 -58.05 11.73 21.65 0.25 -57.80 16 16 Si 0.98 46.04 29.56 68.60 2.03 48.06 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 C 0.16 7.87 6.71 83.27 0.56 8.43 16 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.72 6.77 -2.39 -0.02 1.70 16 23 H 0.05 1.29 8.09 -2.39 -0.02 1.27 16 24 H 0.16 1.74 8.03 -2.91 -0.02 1.72 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 27 H 0.09 1.40 3.81 -2.39 -0.01 1.40 16 28 H 0.07 1.62 7.23 -2.39 -0.02 1.60 16 29 H 0.11 1.96 5.53 -2.38 -0.01 1.95 16 30 H 0.07 1.72 6.46 -2.39 -0.02 1.71 16 31 H 0.09 4.39 7.32 -2.39 -0.02 4.37 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.15 6.90 -2.39 -0.02 2.13 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.04 1.91 6.69 -2.39 -0.02 1.89 16 36 H 0.03 1.61 7.48 -2.38 -0.02 1.59 16 Total: -1.00 -72.69 289.43 3.71 -68.98 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.07 Total: 9.04 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.78 Total: 14.60 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -5.10 Total: -116.64 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.69 3.71 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499650281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.083 kcal (2) G-P(sol) polarization free energy of solvation -72.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds