Wall clock time and date at job start Sun Mar 29 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32988 * 120.00545 * 2 1 4 4 C 1.50707 * 119.99829 * 0.02562 * 3 2 1 5 5 C 1.47103 * 120.00561 * 180.02562 * 3 2 1 6 6 O 1.21615 * 119.99830 * 359.97438 * 5 3 2 7 7 N 1.34778 * 120.00233 * 180.02562 * 5 3 2 8 8 C 1.46496 * 119.99966 * 179.97438 * 7 5 3 9 9 H 1.09008 * 112.84978 * 336.19539 * 8 7 5 10 10 C 1.53778 * 113.61476 * 107.50394 * 8 7 5 11 11 C 1.53778 * 87.08316 * 139.98401 * 10 8 7 12 12 H 1.09002 * 113.68774 * 220.01118 * 11 10 8 13 13 N 1.46490 * 113.61936 * 89.11524 * 11 10 8 14 14 C 1.36935 * 120.00121 * 107.49927 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47055 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46653 * 299.99639 * 18 16 14 21 21 H 1.48495 * 109.47483 * 60.00002 * 18 16 14 22 22 C 1.53777 * 113.61742 * 205.00024 * 8 7 5 23 23 H 1.08996 * 109.47592 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47029 * 299.99875 * 1 2 3 25 25 H 1.09002 * 109.47275 * 59.99274 * 1 2 3 26 26 H 1.08001 * 119.99573 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46875 * 270.00067 * 4 3 2 28 28 H 1.08997 * 109.47116 * 29.99698 * 4 3 2 29 29 H 1.08996 * 109.46971 * 149.99706 * 4 3 2 30 30 H 0.96999 * 119.99717 * 0.02562 * 7 5 3 31 31 H 1.08997 * 113.61538 * 25.42885 * 10 8 7 32 32 H 1.09008 * 113.61391 * 254.53305 * 10 8 7 33 33 H 0.97000 * 120.00577 * 287.50526 * 13 11 10 34 34 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 35 35 H 1.09004 * 113.61866 * 105.46658 * 22 8 7 36 36 H 1.09006 * 113.69115 * 334.58208 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3169 2.3188 0.0000 8 6 5.7819 2.3188 0.0000 9 1 6.2052 1.3995 0.4050 10 6 6.3979 2.7431 -1.3436 11 6 7.4443 3.5212 -0.5285 12 1 7.6974 4.4923 -0.9542 13 7 8.6253 2.7277 -0.1798 14 6 9.8195 2.9657 -0.8062 15 1 9.8908 3.7387 -1.5570 16 6 10.9385 2.2135 -0.4761 17 7 10.8515 1.2710 0.4386 18 14 12.5677 2.5387 -1.3301 19 1 13.5975 1.6076 -0.8029 20 1 12.4114 2.3269 -2.7916 21 1 12.9894 3.9395 -1.0752 22 6 6.3980 3.5954 0.5960 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 2.0469 -0.9354 -0.0004 27 1 1.2365 2.7717 -1.0270 28 1 0.4663 2.3265 0.5147 29 1 2.0078 3.2163 0.5144 30 1 3.8319 3.1589 0.0011 31 1 5.7465 3.3814 -1.9405 32 1 6.8169 1.9136 -1.9133 33 1 8.5614 2.0336 0.4947 34 1 10.0055 1.1024 0.8822 35 1 6.8170 3.4541 1.5923 36 1 5.7475 4.4676 0.5303 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566787530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:01 Heat of formation + Delta-G solvation = 2.354683 kcal Electronic energy + Delta-G solvation = -16599.265424 eV Core-core repulsion = 13891.457751 eV Total energy + Delta-G solvation = -2707.807673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97429 -38.20270 -35.59127 -34.25580 -32.82564 -29.83749 -29.06072 -26.40599 -25.17279 -24.25905 -23.07444 -21.29548 -19.32324 -18.18381 -17.51067 -17.01592 -16.14831 -15.08670 -14.96617 -14.62316 -13.89971 -13.81396 -13.65228 -13.50112 -12.90097 -12.85820 -12.58839 -12.30557 -12.17436 -12.02535 -11.49806 -11.46980 -10.77582 -10.63221 -10.29635 -9.99920 -9.92552 -9.67234 -9.22902 -9.17226 -8.91204 -8.68323 -7.06519 -6.10865 -3.11883 1.29640 3.33490 3.37731 3.52590 3.56577 3.74109 4.63824 4.66119 4.71624 4.95030 4.98475 5.03552 5.19007 5.21469 5.30980 5.38470 5.45383 5.50043 5.58319 5.70104 5.83991 5.85006 6.03236 6.15830 6.25545 6.30155 6.36632 6.59415 6.64735 6.73568 6.97672 7.69044 7.81689 8.38581 8.74424 9.20695 10.06927 10.20722 11.36993 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054525 B = 0.004286 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.406345 B = 6531.472701 C = 6801.354888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.190 4.190 4 C -0.117 4.117 5 C 0.547 3.453 6 O -0.544 6.544 7 N -0.713 5.713 8 C 0.124 3.876 9 H 0.111 0.889 10 C -0.183 4.183 11 C 0.177 3.823 12 H 0.070 0.930 13 N -0.717 5.717 14 C -0.337 4.337 15 H 0.067 0.933 16 C -0.043 4.043 17 N -0.940 5.940 18 Si 1.082 2.918 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.295 1.295 22 C -0.165 4.165 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.396 0.604 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.369 0.631 34 H 0.256 0.744 35 H 0.071 0.929 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.130 4.025 -0.689 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.174 4.174 5 C 0.335 3.665 6 O -0.423 6.423 7 N -0.363 5.363 8 C 0.020 3.980 9 H 0.129 0.871 10 C -0.225 4.225 11 C 0.064 3.936 12 H 0.088 0.912 13 N -0.357 5.357 14 C -0.468 4.468 15 H 0.085 0.915 16 C -0.241 4.241 17 N -0.585 5.585 18 Si 0.912 3.088 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.222 1.222 22 C -0.205 4.205 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.989 2.971 -0.932 19.242 hybrid contribution -1.968 0.668 0.229 2.091 sum -20.957 3.639 -0.703 21.282 Atomic orbital electron populations 1.20972 0.92239 1.02954 1.02417 1.23559 0.96124 0.98101 0.92259 1.21509 0.93032 0.96701 1.08046 1.20820 0.99988 0.94147 1.02432 1.18448 0.87601 0.84119 0.76323 1.90805 1.70070 1.31290 1.50102 1.46056 1.07736 1.08050 1.74493 1.22617 0.77408 0.99551 0.98375 0.87137 1.24302 0.99760 1.01758 0.96720 1.20838 0.85726 0.94480 0.92585 0.91239 1.42198 1.05653 1.40901 1.46904 1.20071 0.88484 1.18654 1.19598 0.91507 1.25836 1.02044 0.96226 1.00009 1.70879 1.27689 1.32921 1.27019 0.83222 0.75325 0.75346 0.74871 1.21002 1.22200 1.22201 1.23909 0.99251 0.96505 1.00829 0.91471 0.90771 0.90875 0.85609 0.90968 0.91004 0.91764 0.76888 0.91144 0.91121 0.79726 0.93300 0.91022 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 8.91 36.00 0.32 -0.55 16 2 C -0.08 -0.85 9.84 -36.13 -0.36 -1.20 16 3 C -0.19 -2.18 6.00 -102.84 -0.62 -2.80 16 4 C -0.12 -0.90 9.14 36.01 0.33 -0.57 16 5 C 0.55 8.61 7.75 -12.66 -0.10 8.51 16 6 O -0.54 -11.07 15.82 5.26 0.08 -10.99 16 7 N -0.71 -10.10 5.30 -54.20 -0.29 -10.39 16 8 C 0.12 2.15 4.12 -67.12 -0.28 1.88 16 9 H 0.11 2.29 7.46 -51.92 -0.39 1.90 16 10 C -0.18 -3.36 7.68 -25.92 -0.20 -3.56 16 11 C 0.18 3.57 4.56 -67.13 -0.31 3.26 16 12 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 13 N -0.72 -18.34 5.31 -52.65 -0.28 -18.61 16 14 C -0.34 -9.63 9.97 -15.06 -0.15 -9.78 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 17 N -0.94 -29.68 13.70 55.49 0.76 -28.92 16 18 Si 1.08 26.22 29.92 -169.99 -5.09 21.13 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.16 -2.69 7.58 -25.92 -0.20 -2.88 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.43 7.40 -51.93 -0.38 0.04 16 25 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 26 H 0.13 1.52 7.49 -52.49 -0.39 1.13 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.44 6.49 -51.93 -0.34 0.10 16 29 H 0.06 0.45 6.70 -51.93 -0.35 0.10 16 30 H 0.40 4.26 6.83 -40.82 -0.28 3.98 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.51 8.14 -51.92 -0.42 1.08 16 33 H 0.37 9.82 6.73 -40.82 -0.27 9.55 16 34 H 0.26 8.00 6.77 -40.82 -0.28 7.72 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -34.35 301.14 -7.18 -41.53 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.26 Total: 10.78 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.64 Total: -9.06 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.19 Total: -57.93 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.09 Total: 21.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.35 -7.18 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566787530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.885 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds