Wall clock time and date at job start Sun Mar 29 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32988 * 120.00545 * 2 1 4 4 C 1.50707 * 119.99829 * 0.02562 * 3 2 1 5 5 C 1.47103 * 120.00561 * 180.02562 * 3 2 1 6 6 O 1.21615 * 119.99830 * 359.97438 * 5 3 2 7 7 N 1.34778 * 120.00233 * 180.02562 * 5 3 2 8 8 C 1.46496 * 119.99966 * 179.97438 * 7 5 3 9 9 H 1.09008 * 112.84978 * 336.19539 * 8 7 5 10 10 C 1.53778 * 113.61476 * 107.50394 * 8 7 5 11 11 C 1.53778 * 87.08316 * 139.98401 * 10 8 7 12 12 H 1.09002 * 113.68774 * 220.01118 * 11 10 8 13 13 N 1.46490 * 113.61936 * 89.11524 * 11 10 8 14 14 C 1.36935 * 120.00121 * 107.49927 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47055 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46653 * 299.99639 * 18 16 14 21 21 H 1.48495 * 109.47483 * 60.00002 * 18 16 14 22 22 C 1.53777 * 113.61742 * 205.00024 * 8 7 5 23 23 H 1.08996 * 109.47592 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47029 * 299.99875 * 1 2 3 25 25 H 1.09002 * 109.47275 * 59.99274 * 1 2 3 26 26 H 1.08001 * 119.99573 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46875 * 270.00067 * 4 3 2 28 28 H 1.08997 * 109.47116 * 29.99698 * 4 3 2 29 29 H 1.08996 * 109.46971 * 149.99706 * 4 3 2 30 30 H 0.96999 * 119.99717 * 0.02562 * 7 5 3 31 31 H 1.08997 * 113.61538 * 25.42885 * 10 8 7 32 32 H 1.09008 * 113.61391 * 254.53305 * 10 8 7 33 33 H 0.97000 * 120.00577 * 287.50526 * 13 11 10 34 34 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 35 35 H 1.09004 * 113.61866 * 105.46658 * 22 8 7 36 36 H 1.09006 * 113.69115 * 334.58208 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3169 2.3188 0.0000 8 6 5.7819 2.3188 0.0000 9 1 6.2052 1.3995 0.4050 10 6 6.3979 2.7431 -1.3436 11 6 7.4443 3.5212 -0.5285 12 1 7.6974 4.4923 -0.9542 13 7 8.6253 2.7277 -0.1798 14 6 9.8195 2.9657 -0.8062 15 1 9.8908 3.7387 -1.5570 16 6 10.9385 2.2135 -0.4761 17 7 10.8515 1.2710 0.4386 18 14 12.5677 2.5387 -1.3301 19 1 13.5975 1.6076 -0.8029 20 1 12.4114 2.3269 -2.7916 21 1 12.9894 3.9395 -1.0752 22 6 6.3980 3.5954 0.5960 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 2.0469 -0.9354 -0.0004 27 1 1.2365 2.7717 -1.0270 28 1 0.4663 2.3265 0.5147 29 1 2.0078 3.2163 0.5144 30 1 3.8319 3.1589 0.0011 31 1 5.7465 3.3814 -1.9405 32 1 6.8169 1.9136 -1.9133 33 1 8.5614 2.0336 0.4947 34 1 10.0055 1.1024 0.8822 35 1 6.8170 3.4541 1.5923 36 1 5.7475 4.4676 0.5303 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566787530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:01 Heat of formation + Delta-G solvation = -22.393231 kcal Electronic energy + Delta-G solvation = -16600.338574 eV Core-core repulsion = 13891.457751 eV Total energy + Delta-G solvation = -2708.880823 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29197 -39.65560 -36.49443 -36.09368 -34.41761 -31.53813 -30.05171 -27.17052 -26.64654 -26.03257 -24.84607 -22.53644 -20.76234 -19.56684 -19.33630 -18.00153 -17.58602 -16.82033 -16.16271 -16.03861 -15.66847 -15.42572 -14.62909 -14.51298 -14.30784 -13.78881 -13.46441 -13.38402 -13.34128 -13.17989 -12.81878 -12.67720 -12.55900 -12.19110 -11.90286 -11.88329 -11.52628 -11.30857 -10.96976 -10.85834 -10.20773 -9.88379 -9.17357 -8.43409 -5.38228 0.35380 1.57260 1.68214 1.84239 2.18597 2.21304 2.69853 3.34807 3.50152 3.64137 3.73279 3.76523 3.98593 4.15497 4.17018 4.27662 4.45542 4.65447 4.70662 4.74855 4.80790 4.88301 4.91099 5.01563 5.06510 5.11478 5.15463 5.20194 5.45814 5.52412 5.60692 5.68098 6.43261 6.55779 7.04262 7.21861 7.93586 8.06078 9.07711 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054525 B = 0.004286 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.406345 B = 6531.472701 C = 6801.354888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.112 4.112 5 C 0.536 3.464 6 O -0.605 6.605 7 N -0.695 5.695 8 C 0.128 3.872 9 H 0.066 0.934 10 C -0.170 4.170 11 C 0.155 3.845 12 H 0.079 0.921 13 N -0.736 5.736 14 C -0.335 4.335 15 H 0.074 0.926 16 C -0.108 4.108 17 N -0.976 5.976 18 Si 1.132 2.868 19 H -0.295 1.295 20 H -0.278 1.278 21 H -0.272 1.272 22 C -0.137 4.137 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.418 0.582 31 H 0.108 0.892 32 H 0.031 0.969 33 H 0.357 0.643 34 H 0.241 0.759 35 H 0.061 0.939 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.613 6.537 -1.379 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.096 4.096 3 C -0.206 4.206 4 C -0.168 4.168 5 C 0.327 3.673 6 O -0.488 6.488 7 N -0.347 5.347 8 C 0.023 3.977 9 H 0.084 0.916 10 C -0.212 4.212 11 C 0.044 3.956 12 H 0.097 0.903 13 N -0.375 5.375 14 C -0.466 4.466 15 H 0.092 0.908 16 C -0.299 4.299 17 N -0.623 5.623 18 Si 0.955 3.045 19 H -0.221 1.221 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.176 4.176 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.126 0.874 32 H 0.050 0.950 33 H 0.189 0.811 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.558 5.570 -1.639 22.326 hybrid contribution -1.306 -0.139 0.417 1.377 sum -22.864 5.432 -1.222 23.532 Atomic orbital electron populations 1.21034 0.88805 1.04141 1.03962 1.23812 0.98482 0.96790 0.90501 1.21557 0.90293 0.99136 1.09651 1.20884 1.00425 0.91751 1.03738 1.19303 0.89633 0.83390 0.74982 1.90779 1.71668 1.33411 1.52923 1.45807 1.06255 1.08920 1.73691 1.22189 0.79368 0.98408 0.97739 0.91588 1.24177 0.99553 1.00606 0.96856 1.21186 0.85117 0.94178 0.95097 0.90312 1.42418 1.06762 1.41554 1.46774 1.20479 0.89531 1.17765 1.18855 0.90777 1.27359 1.05953 0.96076 1.00469 1.71000 1.27021 1.35158 1.29162 0.82595 0.71191 0.76067 0.74600 1.22097 1.20421 1.19734 1.23745 0.97788 0.97413 0.98646 0.90696 0.88888 0.89120 0.88422 0.89626 0.88824 0.90910 0.74305 0.87390 0.95019 0.81075 0.94876 0.92050 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.91 71.23 0.63 -0.65 16 2 C -0.08 -1.52 9.84 24.52 0.24 -1.28 16 3 C -0.20 -4.35 6.00 -18.70 -0.11 -4.46 16 4 C -0.11 -1.27 9.14 71.24 0.65 -0.62 16 5 C 0.54 16.92 7.75 86.57 0.67 17.59 16 6 O -0.60 -26.06 15.82 -4.08 -0.06 -26.13 16 7 N -0.70 -18.75 5.30 -443.64 -2.35 -21.10 16 8 C 0.13 4.45 4.12 45.52 0.19 4.64 16 9 H 0.07 2.92 7.46 -2.38 -0.02 2.91 16 10 C -0.17 -6.15 7.68 31.12 0.24 -5.91 16 11 C 0.15 6.14 4.56 45.52 0.21 6.35 16 12 H 0.08 2.97 8.10 -2.39 -0.02 2.96 16 13 N -0.74 -38.60 5.31 -320.47 -1.70 -40.30 16 14 C -0.34 -19.34 9.97 84.03 0.84 -18.51 16 15 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 16 C -0.11 -6.47 5.50 84.86 0.47 -6.00 16 17 N -0.98 -63.77 13.70 21.65 0.30 -63.47 16 18 Si 1.13 53.10 29.92 68.60 2.05 55.16 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C -0.14 -4.19 7.58 31.12 0.24 -3.96 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.09 0.69 7.40 -2.39 -0.02 0.67 16 25 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 26 H 0.10 2.48 7.49 -2.91 -0.02 2.46 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 0.69 6.49 -2.39 -0.02 0.68 16 29 H 0.07 0.70 6.70 -2.39 -0.02 0.69 16 30 H 0.42 7.54 6.83 -92.71 -0.63 6.91 16 31 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.36 20.07 6.73 -92.71 -0.62 19.44 16 34 H 0.24 15.90 6.77 -92.71 -0.63 15.27 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.13 2.74 8.12 -2.38 -0.02 2.72 16 Total: -1.00 -79.67 301.14 2.46 -77.21 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.03 Total: 31.44 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.26 Total: -12.81 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -3.76 Total: -124.87 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 2.05 Total: 55.16 kcal Total: -79.67 2.46 -77.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566787530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.820 kcal (2) G-P(sol) polarization free energy of solvation -79.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds