Wall clock time and date at job start Sun Mar 29 2020 22:14:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 112.93739 * 2 1
4 4 C 1.53928 * 113.73859 * 228.29162 * 2 1 3
5 5 N 1.47949 * 86.18462 * 221.92232 * 4 2 1
6 6 C 1.47962 * 90.76318 * 24.68577 * 5 4 2
7 7 H 1.09007 * 113.75870 * 89.62931 * 6 5 4
8 8 C 1.50702 * 113.86222 * 220.98064 * 6 5 4
9 9 O 1.21295 * 119.99793 * 3.36040 * 8 6 5
10 10 N 1.34775 * 120.00265 * 183.36391 * 8 6 5
11 11 C 1.37091 * 120.00130 * 185.14606 * 10 8 6
12 12 H 1.07999 * 120.00368 * 325.01028 * 11 10 8
13 13 C 1.38954 * 119.99718 * 145.00914 * 11 10 8
14 14 N 1.31410 * 120.00067 * 4.02107 * 13 11 10
15 15 Si 1.86797 * 119.99617 * 184.01269 * 13 11 10
16 16 H 1.48502 * 109.47357 * 0.02562 * 15 13 11
17 17 H 1.48498 * 109.47072 * 120.00585 * 15 13 11
18 18 H 1.48498 * 109.47223 * 239.99952 * 15 13 11
19 19 C 1.46503 * 119.99552 * 5.14645 * 10 8 6
20 20 C 1.53002 * 117.49900 * 132.71602 * 19 10 8
21 21 C 1.52993 * 117.50042 * 64.09192 * 19 10 8
22 22 H 1.09000 * 109.47114 * 283.76250 * 1 2 3
23 23 H 1.08995 * 109.46884 * 163.76076 * 1 2 3
24 24 H 1.09000 * 109.46880 * 43.76404 * 1 2 3
25 25 H 1.08999 * 109.47468 * 69.66380 * 3 2 1
26 26 H 1.09005 * 109.47239 * 189.66694 * 3 2 1
27 27 H 1.08996 * 109.46932 * 309.66323 * 3 2 1
28 28 H 1.09010 * 113.75802 * 336.24197 * 4 2 1
29 29 H 1.08999 * 113.76532 * 107.60074 * 4 2 1
30 30 H 1.00903 * 111.00359 * 271.79397 * 5 4 2
31 31 H 0.97001 * 119.99718 * 185.00309 * 14 13 11
32 32 H 1.09004 * 115.54938 * 278.42160 * 19 10 8
33 33 H 1.09000 * 117.49666 * 359.97438 * 20 19 10
34 34 H 1.08999 * 117.49773 * 145.01627 * 20 19 10
35 35 H 1.09004 * 117.49706 * 214.97236 * 21 19 10
36 36 H 1.08997 * 117.50113 * 359.97438 * 21 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1263 1.4091 0.0000
4 6 2.1496 -0.9375 -1.0519
5 7 3.1155 -1.3196 0.0017
6 6 2.1495 -0.9348 1.0544
7 1 1.4904 -1.7462 1.3635
8 6 2.7734 -0.2086 2.2182
9 8 3.9555 0.0627 2.2005
10 7 2.0179 0.1393 3.2787
11 6 2.5595 0.8913 4.2890
12 1 3.5931 0.7535 4.5704
13 6 1.7786 1.8309 4.9510
14 7 0.5014 1.9438 4.6632
15 14 2.5445 2.9333 6.2500
16 1 3.9875 2.6097 6.3858
17 1 2.3922 4.3541 5.8459
18 1 1.8628 2.7129 7.5507
19 6 0.6179 -0.2861 3.3518
20 6 0.1327 -0.8960 4.6684
21 6 0.3397 -1.7878 3.4425
22 1 -0.3633 0.2445 0.9982
23 1 -0.3633 -0.9866 -0.2874
24 1 -0.3633 0.7422 -0.7108
25 1 1.9390 1.8829 0.9636
26 1 3.2009 1.3489 -0.1726
27 1 1.6638 1.9992 -0.7911
28 1 1.4905 -1.7496 -1.3590
29 1 2.6026 -0.4144 -1.8941
30 1 3.9142 -0.7031 0.0010
31 1 -0.0274 2.6470 5.0717
32 1 -0.0887 0.3235 2.7886
33 1 0.8553 -0.9811 5.4801
34 1 -0.8933 -0.6876 4.9717
35 1 -0.5502 -2.1661 2.9394
36 1 1.1983 -2.4593 3.4474
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001573612919.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:14:17
Heat of formation + Delta-G solvation = 31.063200 kcal
Electronic energy + Delta-G solvation = -18393.818422 eV
Core-core repulsion = 15687.255644 eV
Total energy + Delta-G solvation = -2706.562778 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.36289 -37.81322 -35.93072 -33.01804 -31.29391 -30.94390 -27.13246 -27.04461
-24.53939 -23.34057 -21.62020 -21.30932 -19.61519 -17.83790 -16.87478 -16.39204
-15.26593 -15.01401 -14.40825 -14.12706 -13.90418 -13.55494 -13.34578 -13.00544
-12.51484 -12.26057 -11.82845 -11.66968 -11.51386 -11.22525 -11.14094 -11.03494
-10.71014 -10.57690 -10.51631 -10.29875 -10.02564 -9.68144 -9.33686 -8.80647
-8.34736 -8.04923 -7.60011 -6.30878 -3.96482 3.15170 3.25753 3.32173
3.73785 4.10175 4.49432 4.74905 4.77286 4.78985 5.06678 5.17411
5.42461 5.64458 5.74649 5.79150 5.83178 5.92489 6.03331 6.04980
6.16339 6.22607 6.26934 6.29010 6.30523 6.37963 6.51060 6.67757
6.72595 6.79403 6.98376 7.22243 7.56281 7.77225 8.20750 8.50077
9.17757 9.39255 9.97249 10.74830
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.027863 B = 0.009718 C = 0.008833
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1004.691792 B = 2880.584592 C = 3169.105808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.110 4.110
3 C -0.132 4.132
4 C 0.019 3.981
5 N -0.643 5.643
6 C 0.038 3.962
7 H 0.117 0.883
8 C 0.469 3.531
9 O -0.581 6.581
10 N -0.419 5.419
11 C -0.310 4.310
12 H 0.091 0.909
13 C 0.045 3.955
14 N -0.871 5.871
15 Si 0.917 3.083
16 H -0.269 1.269
17 H -0.281 1.281
18 H -0.282 1.282
19 C 0.133 3.867
20 C -0.135 4.135
21 C -0.231 4.231
22 H 0.068 0.932
23 H 0.055 0.945
24 H 0.052 0.948
25 H 0.072 0.928
26 H 0.055 0.945
27 H 0.054 0.946
28 H 0.092 0.908
29 H 0.067 0.933
30 H 0.346 0.654
31 H 0.266 0.734
32 H 0.106 0.894
33 H 0.089 0.911
34 H 0.084 0.916
35 H 0.086 0.914
36 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.288 -3.092 -6.503 8.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.112 4.112
3 C -0.189 4.189
4 C -0.111 4.111
5 N -0.273 5.273
6 C -0.076 4.076
7 H 0.135 0.865
8 C 0.257 3.743
9 O -0.464 6.464
10 N -0.137 5.137
11 C -0.437 4.437
12 H 0.109 0.891
13 C -0.160 4.160
14 N -0.509 5.509
15 Si 0.744 3.256
16 H -0.193 1.193
17 H -0.207 1.207
18 H -0.208 1.208
19 C 0.028 3.972
20 C -0.172 4.172
21 C -0.270 4.270
22 H 0.087 0.913
23 H 0.074 0.926
24 H 0.071 0.929
25 H 0.091 0.909
26 H 0.074 0.926
27 H 0.073 0.927
28 H 0.111 0.889
29 H 0.086 0.914
30 H 0.165 0.835
31 H 0.076 0.924
32 H 0.124 0.876
33 H 0.107 0.893
34 H 0.102 0.898
35 H 0.104 0.896
36 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -3.789 -3.720 -6.364 8.288
hybrid contribution -0.028 1.679 0.782 1.853
sum -3.817 -2.041 -5.581 7.063
Atomic orbital electron populations
1.21867 0.94086 1.01201 1.02750 1.23346 0.96582 0.96121 0.95142
1.21619 1.00202 0.94186 1.02868 1.23776 0.95644 0.96999 0.94711
1.65204 1.05989 1.54294 1.01849 1.23393 0.94753 0.97259 0.92169
0.86539 1.19917 0.87290 0.83772 0.83338 1.90514 1.15824 1.59557
1.80547 1.42963 1.08201 1.45638 1.16940 1.19498 0.97412 1.15579
1.11253 0.89090 1.25354 0.95204 0.96941 0.98494 1.69878 1.05443
1.31703 1.43882 0.86010 0.79590 0.79936 0.80091 1.19306 1.20704
1.20827 1.21200 0.85590 0.89426 1.01020 1.22640 1.01168 1.01161
0.92277 1.23590 1.02454 0.95474 1.05445 0.91310 0.92627 0.92911
0.90863 0.92552 0.92724 0.88943 0.91401 0.83546 0.92400 0.87636
0.89285 0.89772 0.89554 0.89783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.05 9.27 37.16 0.34 -1.70 16
2 C -0.11 -1.82 1.35 -153.58 -0.21 -2.02 16
3 C -0.13 -2.32 8.19 37.16 0.30 -2.02 16
4 C 0.02 0.28 8.01 -2.78 -0.02 0.26 16
5 N -0.64 -11.74 8.43 -110.96 -0.94 -12.68 16
6 C 0.04 0.73 3.28 -67.81 -0.22 0.51 16
7 H 0.12 2.17 5.93 -51.93 -0.31 1.87 16
8 C 0.47 11.32 5.51 -10.99 -0.06 11.26 16
9 O -0.58 -15.91 15.78 5.54 0.09 -15.82 16
10 N -0.42 -10.38 2.91 -107.73 -0.31 -10.69 16
11 C -0.31 -8.43 8.61 -14.93 -0.13 -8.56 16
12 H 0.09 2.64 7.59 -52.49 -0.40 2.24 16
13 C 0.04 1.15 5.18 -17.47 -0.09 1.06 16
14 N -0.87 -22.19 10.61 55.50 0.59 -21.60 16
15 Si 0.92 20.63 29.56 -169.99 -5.02 15.60 16
16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
19 C 0.13 2.86 3.12 -67.93 -0.21 2.65 16
20 C -0.13 -2.75 8.80 -26.73 -0.24 -2.99 16
21 C -0.23 -4.20 8.47 -26.73 -0.23 -4.43 16
22 H 0.07 1.11 5.72 -51.93 -0.30 0.81 16
23 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16
24 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16
25 H 0.07 1.55 7.55 -51.93 -0.39 1.16 16
26 H 0.06 1.02 7.38 -51.93 -0.38 0.64 16
27 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16
28 H 0.09 1.21 7.90 -51.92 -0.41 0.80 16
29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16
30 H 0.35 6.74 7.00 -39.29 -0.27 6.47 16
31 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16
32 H 0.11 2.33 6.01 -51.93 -0.31 2.01 16
33 H 0.09 1.98 7.98 -51.93 -0.41 1.56 16
34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16
35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
36 H 0.08 1.58 8.02 -51.93 -0.42 1.16 16
LS Contribution 286.22 15.07 4.31 4.31
Total: -1.00 -28.65 286.22 -7.30 -35.95
By element:
Atomic # 1 Polarization: 16.16 SS G_CDS: -5.26 Total: 10.90 kcal
Atomic # 6 Polarization: -5.22 SS G_CDS: -0.76 Total: -5.98 kcal
Atomic # 7 Polarization: -44.31 SS G_CDS: -0.66 Total: -44.97 kcal
Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -28.65 -7.30 -35.95 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001573612919.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.015 kcal
(2) G-P(sol) polarization free energy of solvation -28.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.063 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds