Wall clock time and date at job start Sun Mar 29 2020 22:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 112.93739 * 2 1 4 4 C 1.53928 * 113.73859 * 228.29162 * 2 1 3 5 5 N 1.47949 * 86.18462 * 221.92232 * 4 2 1 6 6 C 1.47962 * 90.76318 * 24.68577 * 5 4 2 7 7 H 1.09007 * 113.75870 * 89.62931 * 6 5 4 8 8 C 1.50702 * 113.86222 * 220.98064 * 6 5 4 9 9 O 1.21295 * 119.99793 * 3.36040 * 8 6 5 10 10 N 1.34775 * 120.00265 * 183.36391 * 8 6 5 11 11 C 1.37091 * 120.00130 * 185.14606 * 10 8 6 12 12 H 1.07999 * 120.00368 * 325.01028 * 11 10 8 13 13 C 1.38954 * 119.99718 * 145.00914 * 11 10 8 14 14 N 1.31410 * 120.00067 * 4.02107 * 13 11 10 15 15 Si 1.86797 * 119.99617 * 184.01269 * 13 11 10 16 16 H 1.48502 * 109.47357 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47072 * 120.00585 * 15 13 11 18 18 H 1.48498 * 109.47223 * 239.99952 * 15 13 11 19 19 C 1.46503 * 119.99552 * 5.14645 * 10 8 6 20 20 C 1.53002 * 117.49900 * 132.71602 * 19 10 8 21 21 C 1.52993 * 117.50042 * 64.09192 * 19 10 8 22 22 H 1.09000 * 109.47114 * 283.76250 * 1 2 3 23 23 H 1.08995 * 109.46884 * 163.76076 * 1 2 3 24 24 H 1.09000 * 109.46880 * 43.76404 * 1 2 3 25 25 H 1.08999 * 109.47468 * 69.66380 * 3 2 1 26 26 H 1.09005 * 109.47239 * 189.66694 * 3 2 1 27 27 H 1.08996 * 109.46932 * 309.66323 * 3 2 1 28 28 H 1.09010 * 113.75802 * 336.24197 * 4 2 1 29 29 H 1.08999 * 113.76532 * 107.60074 * 4 2 1 30 30 H 1.00903 * 111.00359 * 271.79397 * 5 4 2 31 31 H 0.97001 * 119.99718 * 185.00309 * 14 13 11 32 32 H 1.09004 * 115.54938 * 278.42160 * 19 10 8 33 33 H 1.09000 * 117.49666 * 359.97438 * 20 19 10 34 34 H 1.08999 * 117.49773 * 145.01627 * 20 19 10 35 35 H 1.09004 * 117.49706 * 214.97236 * 21 19 10 36 36 H 1.08997 * 117.50113 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4091 0.0000 4 6 2.1496 -0.9375 -1.0519 5 7 3.1155 -1.3196 0.0017 6 6 2.1495 -0.9348 1.0544 7 1 1.4904 -1.7462 1.3635 8 6 2.7734 -0.2086 2.2182 9 8 3.9555 0.0627 2.2005 10 7 2.0179 0.1393 3.2787 11 6 2.5595 0.8913 4.2890 12 1 3.5931 0.7535 4.5704 13 6 1.7786 1.8309 4.9510 14 7 0.5014 1.9438 4.6632 15 14 2.5445 2.9333 6.2500 16 1 3.9875 2.6097 6.3858 17 1 2.3922 4.3541 5.8459 18 1 1.8628 2.7129 7.5507 19 6 0.6179 -0.2861 3.3518 20 6 0.1327 -0.8960 4.6684 21 6 0.3397 -1.7878 3.4425 22 1 -0.3633 0.2445 0.9982 23 1 -0.3633 -0.9866 -0.2874 24 1 -0.3633 0.7422 -0.7108 25 1 1.9390 1.8829 0.9636 26 1 3.2009 1.3489 -0.1726 27 1 1.6638 1.9992 -0.7911 28 1 1.4905 -1.7496 -1.3590 29 1 2.6026 -0.4144 -1.8941 30 1 3.9142 -0.7031 0.0010 31 1 -0.0274 2.6470 5.0717 32 1 -0.0887 0.3235 2.7886 33 1 0.8553 -0.9811 5.4801 34 1 -0.8933 -0.6876 4.9717 35 1 -0.5502 -2.1661 2.9394 36 1 1.1983 -2.4593 3.4474 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573612919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:17 Heat of formation + Delta-G solvation = 31.063200 kcal Electronic energy + Delta-G solvation = -18393.818422 eV Core-core repulsion = 15687.255644 eV Total energy + Delta-G solvation = -2706.562778 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36289 -37.81322 -35.93072 -33.01804 -31.29391 -30.94390 -27.13246 -27.04461 -24.53939 -23.34057 -21.62020 -21.30932 -19.61519 -17.83790 -16.87478 -16.39204 -15.26593 -15.01401 -14.40825 -14.12706 -13.90418 -13.55494 -13.34578 -13.00544 -12.51484 -12.26057 -11.82845 -11.66968 -11.51386 -11.22525 -11.14094 -11.03494 -10.71014 -10.57690 -10.51631 -10.29875 -10.02564 -9.68144 -9.33686 -8.80647 -8.34736 -8.04923 -7.60011 -6.30878 -3.96482 3.15170 3.25753 3.32173 3.73785 4.10175 4.49432 4.74905 4.77286 4.78985 5.06678 5.17411 5.42461 5.64458 5.74649 5.79150 5.83178 5.92489 6.03331 6.04980 6.16339 6.22607 6.26934 6.29010 6.30523 6.37963 6.51060 6.67757 6.72595 6.79403 6.98376 7.22243 7.56281 7.77225 8.20750 8.50077 9.17757 9.39255 9.97249 10.74830 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.009718 C = 0.008833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.691792 B = 2880.584592 C = 3169.105808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.132 4.132 4 C 0.019 3.981 5 N -0.643 5.643 6 C 0.038 3.962 7 H 0.117 0.883 8 C 0.469 3.531 9 O -0.581 6.581 10 N -0.419 5.419 11 C -0.310 4.310 12 H 0.091 0.909 13 C 0.045 3.955 14 N -0.871 5.871 15 Si 0.917 3.083 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.133 3.867 20 C -0.135 4.135 21 C -0.231 4.231 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.346 0.654 31 H 0.266 0.734 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -3.092 -6.503 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.189 4.189 4 C -0.111 4.111 5 N -0.273 5.273 6 C -0.076 4.076 7 H 0.135 0.865 8 C 0.257 3.743 9 O -0.464 6.464 10 N -0.137 5.137 11 C -0.437 4.437 12 H 0.109 0.891 13 C -0.160 4.160 14 N -0.509 5.509 15 Si 0.744 3.256 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.028 3.972 20 C -0.172 4.172 21 C -0.270 4.270 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.165 0.835 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.789 -3.720 -6.364 8.288 hybrid contribution -0.028 1.679 0.782 1.853 sum -3.817 -2.041 -5.581 7.063 Atomic orbital electron populations 1.21867 0.94086 1.01201 1.02750 1.23346 0.96582 0.96121 0.95142 1.21619 1.00202 0.94186 1.02868 1.23776 0.95644 0.96999 0.94711 1.65204 1.05989 1.54294 1.01849 1.23393 0.94753 0.97259 0.92169 0.86539 1.19917 0.87290 0.83772 0.83338 1.90514 1.15824 1.59557 1.80547 1.42963 1.08201 1.45638 1.16940 1.19498 0.97412 1.15579 1.11253 0.89090 1.25354 0.95204 0.96941 0.98494 1.69878 1.05443 1.31703 1.43882 0.86010 0.79590 0.79936 0.80091 1.19306 1.20704 1.20827 1.21200 0.85590 0.89426 1.01020 1.22640 1.01168 1.01161 0.92277 1.23590 1.02454 0.95474 1.05445 0.91310 0.92627 0.92911 0.90863 0.92552 0.92724 0.88943 0.91401 0.83546 0.92400 0.87636 0.89285 0.89772 0.89554 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.27 37.16 0.34 -1.70 16 2 C -0.11 -1.82 1.35 -153.58 -0.21 -2.02 16 3 C -0.13 -2.32 8.19 37.16 0.30 -2.02 16 4 C 0.02 0.28 8.01 -2.78 -0.02 0.26 16 5 N -0.64 -11.74 8.43 -110.96 -0.94 -12.68 16 6 C 0.04 0.73 3.28 -67.81 -0.22 0.51 16 7 H 0.12 2.17 5.93 -51.93 -0.31 1.87 16 8 C 0.47 11.32 5.51 -10.99 -0.06 11.26 16 9 O -0.58 -15.91 15.78 5.54 0.09 -15.82 16 10 N -0.42 -10.38 2.91 -107.73 -0.31 -10.69 16 11 C -0.31 -8.43 8.61 -14.93 -0.13 -8.56 16 12 H 0.09 2.64 7.59 -52.49 -0.40 2.24 16 13 C 0.04 1.15 5.18 -17.47 -0.09 1.06 16 14 N -0.87 -22.19 10.61 55.50 0.59 -21.60 16 15 Si 0.92 20.63 29.56 -169.99 -5.02 15.60 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.13 2.86 3.12 -67.93 -0.21 2.65 16 20 C -0.13 -2.75 8.80 -26.73 -0.24 -2.99 16 21 C -0.23 -4.20 8.47 -26.73 -0.23 -4.43 16 22 H 0.07 1.11 5.72 -51.93 -0.30 0.81 16 23 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16 24 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16 25 H 0.07 1.55 7.55 -51.93 -0.39 1.16 16 26 H 0.06 1.02 7.38 -51.93 -0.38 0.64 16 27 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.09 1.21 7.90 -51.92 -0.41 0.80 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.35 6.74 7.00 -39.29 -0.27 6.47 16 31 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 32 H 0.11 2.33 6.01 -51.93 -0.31 2.01 16 33 H 0.09 1.98 7.98 -51.93 -0.41 1.56 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.58 8.02 -51.93 -0.42 1.16 16 LS Contribution 286.22 15.07 4.31 4.31 Total: -1.00 -28.65 286.22 -7.30 -35.95 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.26 Total: 10.90 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.76 Total: -5.98 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.66 Total: -44.97 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.65 -7.30 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.015 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds