Wall clock time and date at job start Sun Mar 29 2020 22:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 112.93739 * 2 1 4 4 C 1.53928 * 113.73859 * 228.29162 * 2 1 3 5 5 N 1.47949 * 86.18462 * 221.92232 * 4 2 1 6 6 C 1.47962 * 90.76318 * 24.68577 * 5 4 2 7 7 H 1.09007 * 113.75870 * 89.62931 * 6 5 4 8 8 C 1.50702 * 113.86222 * 220.98064 * 6 5 4 9 9 O 1.21295 * 119.99793 * 3.36040 * 8 6 5 10 10 N 1.34775 * 120.00265 * 183.36391 * 8 6 5 11 11 C 1.37091 * 120.00130 * 185.14606 * 10 8 6 12 12 H 1.07999 * 120.00368 * 325.01028 * 11 10 8 13 13 C 1.38954 * 119.99718 * 145.00914 * 11 10 8 14 14 N 1.31410 * 120.00067 * 4.02107 * 13 11 10 15 15 Si 1.86797 * 119.99617 * 184.01269 * 13 11 10 16 16 H 1.48502 * 109.47357 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47072 * 120.00585 * 15 13 11 18 18 H 1.48498 * 109.47223 * 239.99952 * 15 13 11 19 19 C 1.46503 * 119.99552 * 5.14645 * 10 8 6 20 20 C 1.53002 * 117.49900 * 132.71602 * 19 10 8 21 21 C 1.52993 * 117.50042 * 64.09192 * 19 10 8 22 22 H 1.09000 * 109.47114 * 283.76250 * 1 2 3 23 23 H 1.08995 * 109.46884 * 163.76076 * 1 2 3 24 24 H 1.09000 * 109.46880 * 43.76404 * 1 2 3 25 25 H 1.08999 * 109.47468 * 69.66380 * 3 2 1 26 26 H 1.09005 * 109.47239 * 189.66694 * 3 2 1 27 27 H 1.08996 * 109.46932 * 309.66323 * 3 2 1 28 28 H 1.09010 * 113.75802 * 336.24197 * 4 2 1 29 29 H 1.08999 * 113.76532 * 107.60074 * 4 2 1 30 30 H 1.00903 * 111.00359 * 271.79397 * 5 4 2 31 31 H 0.97001 * 119.99718 * 185.00309 * 14 13 11 32 32 H 1.09004 * 115.54938 * 278.42160 * 19 10 8 33 33 H 1.09000 * 117.49666 * 359.97438 * 20 19 10 34 34 H 1.08999 * 117.49773 * 145.01627 * 20 19 10 35 35 H 1.09004 * 117.49706 * 214.97236 * 21 19 10 36 36 H 1.08997 * 117.50113 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4091 0.0000 4 6 2.1496 -0.9375 -1.0519 5 7 3.1155 -1.3196 0.0017 6 6 2.1495 -0.9348 1.0544 7 1 1.4904 -1.7462 1.3635 8 6 2.7734 -0.2086 2.2182 9 8 3.9555 0.0627 2.2005 10 7 2.0179 0.1393 3.2787 11 6 2.5595 0.8913 4.2890 12 1 3.5931 0.7535 4.5704 13 6 1.7786 1.8309 4.9510 14 7 0.5014 1.9438 4.6632 15 14 2.5445 2.9333 6.2500 16 1 3.9875 2.6097 6.3858 17 1 2.3922 4.3541 5.8459 18 1 1.8628 2.7129 7.5507 19 6 0.6179 -0.2861 3.3518 20 6 0.1327 -0.8960 4.6684 21 6 0.3397 -1.7878 3.4425 22 1 -0.3633 0.2445 0.9982 23 1 -0.3633 -0.9866 -0.2874 24 1 -0.3633 0.7422 -0.7108 25 1 1.9390 1.8829 0.9636 26 1 3.2009 1.3489 -0.1726 27 1 1.6638 1.9992 -0.7911 28 1 1.4905 -1.7496 -1.3590 29 1 2.6026 -0.4144 -1.8941 30 1 3.9142 -0.7031 0.0010 31 1 -0.0274 2.6470 5.0717 32 1 -0.0887 0.3235 2.7886 33 1 0.8553 -0.9811 5.4801 34 1 -0.8933 -0.6876 4.9717 35 1 -0.5502 -2.1661 2.9394 36 1 1.1983 -2.4593 3.4474 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573612919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:16 Heat of formation + Delta-G solvation = 10.912293 kcal Electronic energy + Delta-G solvation = -18394.692231 eV Core-core repulsion = 15687.255644 eV Total energy + Delta-G solvation = -2707.436587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87564 -39.49056 -37.74614 -34.91179 -33.05460 -32.42800 -28.72797 -28.42865 -26.30376 -24.69441 -23.22989 -22.98459 -21.28496 -19.29224 -18.76486 -18.06672 -17.11618 -16.70360 -16.02105 -15.73280 -15.37884 -15.20775 -14.70030 -14.51596 -14.17043 -13.71350 -13.64076 -13.06148 -13.03334 -12.93500 -12.87701 -12.52998 -12.26252 -12.23808 -12.13735 -11.88655 -11.45350 -11.39812 -11.00702 -10.63644 -10.19502 -9.54005 -9.42891 -8.29111 -6.01973 1.32887 1.38220 1.49525 1.95883 2.25380 2.94108 3.00946 3.15399 3.24602 3.42312 3.75560 4.06007 4.16114 4.23036 4.37053 4.45079 4.57794 4.63689 4.71647 4.75297 4.83297 4.84451 5.01499 5.06506 5.06927 5.17071 5.19789 5.25943 5.40092 5.44378 5.46404 5.60357 6.16780 6.30289 6.56723 7.19658 7.48340 8.06005 8.73767 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.009718 C = 0.008833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.691792 B = 2880.584592 C = 3169.105808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.126 4.126 4 C 0.034 3.966 5 N -0.655 5.655 6 C 0.038 3.962 7 H 0.129 0.871 8 C 0.458 3.542 9 O -0.628 6.628 10 N -0.428 5.428 11 C -0.344 4.344 12 H 0.057 0.943 13 C 0.019 3.981 14 N -0.874 5.874 15 Si 0.971 3.029 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.268 1.268 19 C 0.114 3.886 20 C -0.142 4.142 21 C -0.192 4.192 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.336 0.664 31 H 0.271 0.729 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -3.780 -7.951 10.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.183 4.183 4 C -0.095 4.095 5 N -0.284 5.284 6 C -0.076 4.076 7 H 0.146 0.854 8 C 0.247 3.753 9 O -0.516 6.516 10 N -0.146 5.146 11 C -0.472 4.472 12 H 0.074 0.926 13 C -0.185 4.185 14 N -0.511 5.511 15 Si 0.796 3.204 16 H -0.206 1.206 17 H -0.200 1.200 18 H -0.193 1.193 19 C 0.009 3.991 20 C -0.180 4.180 21 C -0.230 4.230 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.946 -4.423 -7.812 10.768 hybrid contribution 0.643 1.906 1.230 2.358 sum -5.303 -2.516 -6.582 8.820 Atomic orbital electron populations 1.21848 0.91970 1.03392 1.02223 1.23325 0.98168 0.94861 0.94481 1.21547 0.99813 0.95575 1.01361 1.23921 0.94472 0.97155 0.93960 1.65240 1.06233 1.54157 1.02808 1.23389 0.95352 0.98010 0.90827 0.85360 1.20802 0.86818 0.83419 0.84212 1.90463 1.17971 1.61541 1.81589 1.43120 1.09499 1.45395 1.16557 1.19317 0.96579 1.18020 1.13299 0.92551 1.25880 0.95644 0.97319 0.99693 1.69926 1.05578 1.31622 1.43939 0.85219 0.78205 0.78442 0.78568 1.20612 1.19984 1.19308 1.21215 0.83763 0.91893 1.02195 1.22597 1.01085 1.02530 0.91793 1.23612 1.03504 0.92948 1.02941 0.93243 0.89962 0.91129 0.95277 0.93971 0.89663 0.86099 0.89383 0.84752 0.91907 0.87970 0.91925 0.88351 0.85352 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.27 71.98 0.67 -2.81 16 2 C -0.11 -3.29 1.35 -51.54 -0.07 -3.36 16 3 C -0.13 -4.39 8.19 71.98 0.59 -3.80 16 4 C 0.03 0.88 8.01 86.41 0.69 1.58 16 5 N -0.66 -23.07 8.43 -504.96 -4.26 -27.33 16 6 C 0.04 1.42 3.28 44.27 0.15 1.57 16 7 H 0.13 4.50 5.93 -2.38 -0.01 4.49 16 8 C 0.46 22.82 5.51 87.66 0.48 23.30 16 9 O -0.63 -36.33 15.78 -3.08 -0.05 -36.37 16 10 N -0.43 -21.89 2.91 -613.13 -1.78 -23.67 16 11 C -0.34 -19.62 8.61 84.04 0.72 -18.89 16 12 H 0.06 3.52 7.59 -2.91 -0.02 3.50 16 13 C 0.02 0.99 5.18 84.93 0.44 1.43 16 14 N -0.87 -44.59 10.61 21.66 0.23 -44.36 16 15 Si 0.97 43.05 29.56 68.60 2.03 45.08 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 19 C 0.11 4.86 3.12 44.99 0.14 5.00 16 20 C -0.14 -5.72 8.80 30.59 0.27 -5.46 16 21 C -0.19 -6.56 8.47 30.59 0.26 -6.30 16 22 H 0.05 1.47 5.72 -2.39 -0.01 1.45 16 23 H 0.08 1.66 7.84 -2.39 -0.02 1.64 16 24 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 25 H 0.03 1.25 7.55 -2.39 -0.02 1.23 16 26 H 0.04 1.55 7.38 -2.38 -0.02 1.53 16 27 H 0.08 2.38 8.13 -2.39 -0.02 2.36 16 28 H 0.12 2.51 7.90 -2.38 -0.02 2.49 16 29 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.34 13.14 7.00 -89.69 -0.63 12.51 16 31 H 0.27 13.06 8.32 -92.71 -0.77 12.29 16 32 H 0.10 4.44 6.01 -2.38 -0.01 4.43 16 33 H 0.06 2.84 7.98 -2.39 -0.02 2.82 16 34 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.13 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.08 2.79 8.02 -2.39 -0.02 2.77 16 Total: -1.00 -65.33 286.22 0.95 -64.38 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.45 Total: 30.03 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.34 Total: -7.74 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -5.81 Total: -95.37 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.05 Total: -36.37 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.33 0.95 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.289 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds