Wall clock time and date at job start Sun Mar 29 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00250 * 2 1 4 4 C 1.50703 * 120.00123 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47319 * 95.00070 * 4 2 1 6 6 H 1.08998 * 109.47091 * 55.00273 * 5 4 2 7 7 N 1.46902 * 109.46966 * 295.00171 * 5 4 2 8 8 C 1.50701 * 109.47424 * 175.00216 * 5 4 2 9 9 O 1.21290 * 119.99944 * 99.99452 * 8 5 4 10 10 N 1.34779 * 120.00057 * 279.72715 * 8 5 4 11 11 C 1.37092 * 120.00148 * 180.27428 * 10 8 5 12 12 H 1.08003 * 119.99830 * 222.61909 * 11 10 8 13 13 C 1.38943 * 120.00439 * 42.61986 * 11 10 8 14 14 N 1.31412 * 119.99912 * 19.28338 * 13 11 10 15 15 Si 1.86800 * 120.00173 * 199.29253 * 13 11 10 16 16 H 1.48502 * 109.47205 * 89.99956 * 15 13 11 17 17 H 1.48501 * 109.47028 * 209.99607 * 15 13 11 18 18 H 1.48500 * 109.46933 * 329.99560 * 15 13 11 19 19 C 1.46504 * 119.99718 * 0.27201 * 10 8 5 20 20 C 1.52997 * 117.50071 * 183.36771 * 19 10 8 21 21 C 1.52993 * 117.49920 * 114.70621 * 19 10 8 22 22 H 1.08004 * 119.99820 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00094 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47376 * 270.00251 * 3 2 1 25 25 H 1.09005 * 109.46701 * 29.99786 * 3 2 1 26 26 H 1.08996 * 109.47271 * 149.99432 * 3 2 1 27 27 H 1.08998 * 109.47202 * 335.00038 * 4 2 1 28 28 H 1.09002 * 109.47265 * 215.00337 * 4 2 1 29 29 H 1.00906 * 110.99652 * 176.04395 * 7 5 4 30 30 H 1.00902 * 110.99925 * 299.99533 * 7 5 4 31 31 H 0.96994 * 120.00159 * 174.84296 * 14 13 11 32 32 H 1.09004 * 115.55054 * 329.03874 * 19 10 8 33 33 H 1.09008 * 117.49587 * 0.02562 * 20 19 10 34 34 H 1.09000 * 117.50150 * 145.01592 * 20 19 10 35 35 H 1.09008 * 117.49940 * 214.97732 * 21 19 10 36 36 H 1.08997 * 117.50423 * 359.97414 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9771 -0.8639 -1.9009 7 7 1.1998 -1.9430 -2.2015 8 6 3.2853 -2.9222 -1.4293 9 8 2.7910 -4.0038 -1.6681 10 7 4.6029 -2.8278 -1.1618 11 6 5.3845 -3.9541 -1.1596 12 1 6.1234 -4.0972 -0.3850 13 6 5.2260 -4.9116 -2.1539 14 7 4.6289 -4.5957 -3.2811 15 14 5.8617 -6.6479 -1.8884 16 1 4.7963 -7.4756 -1.2676 17 1 6.2490 -7.2384 -3.1947 18 1 7.0449 -6.6102 -0.9919 19 6 5.1999 -1.5214 -0.8733 20 6 6.7134 -1.4689 -0.6552 21 6 5.7623 -1.2964 0.5317 22 1 -0.5400 -0.9354 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 2.2452 1.6198 -1.0276 25 1 1.4744 2.0647 0.5138 26 1 3.0159 1.1747 0.5139 27 1 1.4386 -2.0857 0.4334 28 1 2.9742 -1.1991 0.5890 29 1 1.4098 -2.1319 -3.1702 30 1 0.6721 -2.6992 -1.7918 31 1 4.5843 -5.2411 -4.0038 32 1 4.7333 -0.6711 -1.3707 33 1 7.2650 -2.4064 -0.7269 34 1 7.2425 -0.5840 -1.0089 35 1 5.6661 -0.2980 0.9584 36 1 5.6878 -2.1202 1.2415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574067419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:53 Heat of formation + Delta-G solvation = 15.381111 kcal Electronic energy + Delta-G solvation = -17855.472291 eV Core-core repulsion = 15148.229486 eV Total energy + Delta-G solvation = -2707.242805 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.97899 -36.59071 -35.81350 -33.19789 -32.38245 -30.88432 -27.95826 -26.99060 -25.29929 -22.71669 -21.73612 -21.06687 -19.02270 -18.13615 -16.61664 -16.09008 -15.44538 -14.76773 -14.56393 -14.28456 -13.91923 -13.67209 -13.16200 -13.09908 -12.80664 -12.53147 -11.79898 -11.41584 -11.36613 -11.13195 -10.97230 -10.89357 -10.81926 -10.55632 -10.47560 -10.20278 -9.96862 -9.75101 -8.98879 -8.60111 -8.53282 -7.68489 -7.03099 -6.14125 -3.87696 2.64953 3.28417 3.35272 3.38496 4.09880 4.25055 4.72237 4.84618 5.10363 5.19682 5.29316 5.39609 5.53178 5.62798 5.72105 5.75633 5.83282 5.86388 6.00187 6.08769 6.14371 6.20610 6.26366 6.33834 6.44178 6.50328 6.72191 6.90322 7.00753 7.30307 7.58720 7.68405 8.04006 8.23809 9.03991 9.12875 9.65081 10.26159 10.95037 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.008815 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.216786 B = 3175.627429 C = 3867.683598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.118 4.118 4 C -0.069 4.069 5 C 0.085 3.915 6 H 0.082 0.918 7 N -0.820 5.820 8 C 0.450 3.550 9 O -0.538 6.538 10 N -0.423 5.423 11 C -0.352 4.352 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.832 5.832 15 Si 0.913 3.087 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.076 3.924 20 C -0.176 4.176 21 C -0.206 4.206 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.340 0.660 30 H 0.340 0.660 31 H 0.263 0.737 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 9.505 4.996 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.108 4.108 3 C -0.174 4.174 4 C -0.107 4.107 5 C -0.031 4.031 6 H 0.100 0.900 7 N -0.348 5.348 8 C 0.236 3.764 9 O -0.416 6.416 10 N -0.144 5.144 11 C -0.479 4.479 12 H 0.095 0.905 13 C -0.137 4.137 14 N -0.466 5.466 15 Si 0.740 3.260 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.031 4.031 20 C -0.213 4.213 21 C -0.245 4.245 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.557 9.588 4.888 11.062 hybrid contribution 0.883 -1.747 -0.270 1.977 sum -1.674 7.841 4.617 9.252 Atomic orbital electron populations 1.23448 0.95183 1.00913 1.03041 1.21517 0.95313 0.95021 0.98995 1.20849 0.99990 0.94740 1.01861 1.20589 1.00154 0.94456 0.95539 1.21333 0.90868 0.96387 0.94503 0.89975 1.59293 1.19689 1.49208 1.06581 1.20940 0.82617 0.90594 0.82258 1.90521 1.72048 1.29327 1.49743 1.42889 1.05443 1.03297 1.62755 1.18900 1.20995 0.96865 1.11093 0.90496 1.25198 0.95094 0.99481 0.93916 1.69823 1.38913 1.35084 1.02758 0.86211 0.78543 0.83804 0.77439 1.20408 1.21315 1.19917 1.21717 0.94634 0.89768 0.96953 1.23092 0.93309 1.03017 1.01917 1.23323 1.06817 1.01540 0.92867 0.88783 0.89490 0.91676 0.92449 0.92040 0.91546 0.90536 0.84783 0.84769 0.92676 0.87980 0.87548 0.89781 0.89728 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 13.68 29.02 0.40 -2.20 16 2 C -0.11 -1.56 5.09 -101.06 -0.51 -2.07 16 3 C -0.12 -1.42 10.03 36.01 0.36 -1.06 16 4 C -0.07 -1.16 4.94 -27.88 -0.14 -1.30 16 5 C 0.08 1.64 2.42 -68.86 -0.17 1.48 16 6 H 0.08 1.56 6.47 -51.93 -0.34 1.22 16 7 N -0.82 -15.11 8.52 -5.65 -0.05 -15.16 16 8 C 0.45 11.14 6.21 -10.98 -0.07 11.07 16 9 O -0.54 -15.52 13.89 5.55 0.08 -15.45 16 10 N -0.42 -10.40 2.85 -107.73 -0.31 -10.71 16 11 C -0.35 -9.56 7.99 -14.94 -0.12 -9.68 16 12 H 0.08 2.04 7.19 -52.48 -0.38 1.66 16 13 C 0.07 2.07 4.35 -17.47 -0.08 2.00 16 14 N -0.83 -24.54 11.66 55.50 0.65 -23.90 16 15 Si 0.91 22.05 29.60 -169.99 -5.03 17.01 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.08 1.48 5.08 -67.93 -0.34 1.14 16 20 C -0.18 -3.13 9.80 -26.70 -0.26 -3.39 16 21 C -0.21 -3.44 9.97 -26.70 -0.27 -3.71 16 22 H 0.09 1.33 7.99 -52.48 -0.42 0.91 16 23 H 0.09 1.05 8.04 -52.49 -0.42 0.62 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 28 H 0.08 1.28 6.89 -51.93 -0.36 0.92 16 29 H 0.34 6.53 9.06 -39.29 -0.36 6.18 16 30 H 0.34 6.44 8.58 -39.29 -0.34 6.10 16 31 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 32 H 0.10 1.83 6.42 -51.93 -0.33 1.50 16 33 H 0.11 2.11 6.69 -51.92 -0.35 1.77 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -31.17 299.74 -6.71 -37.88 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.37 Total: 13.53 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.20 Total: -7.72 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.29 Total: -49.77 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.08 Total: -15.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.17 -6.71 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574067419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.259 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds