Wall clock time and date at job start Sun Mar 29 2020 22:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00250 * 2 1 4 4 C 1.50703 * 120.00123 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47319 * 95.00070 * 4 2 1 6 6 H 1.08998 * 109.47091 * 55.00273 * 5 4 2 7 7 N 1.46902 * 109.46966 * 295.00171 * 5 4 2 8 8 C 1.50701 * 109.47424 * 175.00216 * 5 4 2 9 9 O 1.21290 * 119.99944 * 99.99452 * 8 5 4 10 10 N 1.34779 * 120.00057 * 279.72715 * 8 5 4 11 11 C 1.37092 * 120.00148 * 180.27428 * 10 8 5 12 12 H 1.08003 * 119.99830 * 222.61909 * 11 10 8 13 13 C 1.38943 * 120.00439 * 42.61986 * 11 10 8 14 14 N 1.31412 * 119.99912 * 19.28338 * 13 11 10 15 15 Si 1.86800 * 120.00173 * 199.29253 * 13 11 10 16 16 H 1.48502 * 109.47205 * 89.99956 * 15 13 11 17 17 H 1.48501 * 109.47028 * 209.99607 * 15 13 11 18 18 H 1.48500 * 109.46933 * 329.99560 * 15 13 11 19 19 C 1.46504 * 119.99718 * 0.27201 * 10 8 5 20 20 C 1.52997 * 117.50071 * 183.36771 * 19 10 8 21 21 C 1.52993 * 117.49920 * 114.70621 * 19 10 8 22 22 H 1.08004 * 119.99820 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00094 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47376 * 270.00251 * 3 2 1 25 25 H 1.09005 * 109.46701 * 29.99786 * 3 2 1 26 26 H 1.08996 * 109.47271 * 149.99432 * 3 2 1 27 27 H 1.08998 * 109.47202 * 335.00038 * 4 2 1 28 28 H 1.09002 * 109.47265 * 215.00337 * 4 2 1 29 29 H 1.00906 * 110.99652 * 176.04395 * 7 5 4 30 30 H 1.00902 * 110.99925 * 299.99533 * 7 5 4 31 31 H 0.96994 * 120.00159 * 174.84296 * 14 13 11 32 32 H 1.09004 * 115.55054 * 329.03874 * 19 10 8 33 33 H 1.09008 * 117.49587 * 0.02562 * 20 19 10 34 34 H 1.09000 * 117.50150 * 145.01592 * 20 19 10 35 35 H 1.09008 * 117.49940 * 214.97732 * 21 19 10 36 36 H 1.08997 * 117.50423 * 359.97414 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9771 -0.8639 -1.9009 7 7 1.1998 -1.9430 -2.2015 8 6 3.2853 -2.9222 -1.4293 9 8 2.7910 -4.0038 -1.6681 10 7 4.6029 -2.8278 -1.1618 11 6 5.3845 -3.9541 -1.1596 12 1 6.1234 -4.0972 -0.3850 13 6 5.2260 -4.9116 -2.1539 14 7 4.6289 -4.5957 -3.2811 15 14 5.8617 -6.6479 -1.8884 16 1 4.7963 -7.4756 -1.2676 17 1 6.2490 -7.2384 -3.1947 18 1 7.0449 -6.6102 -0.9919 19 6 5.1999 -1.5214 -0.8733 20 6 6.7134 -1.4689 -0.6552 21 6 5.7623 -1.2964 0.5317 22 1 -0.5400 -0.9354 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 2.2452 1.6198 -1.0276 25 1 1.4744 2.0647 0.5138 26 1 3.0159 1.1747 0.5139 27 1 1.4386 -2.0857 0.4334 28 1 2.9742 -1.1991 0.5890 29 1 1.4098 -2.1319 -3.1702 30 1 0.6721 -2.6992 -1.7918 31 1 4.5843 -5.2411 -4.0038 32 1 4.7333 -0.6711 -1.3707 33 1 7.2650 -2.4064 -0.7269 34 1 7.2425 -0.5840 -1.0089 35 1 5.6661 -0.2980 0.9584 36 1 5.6878 -2.1202 1.2415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574067419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:52 Heat of formation + Delta-G solvation = -5.782195 kcal Electronic energy + Delta-G solvation = -17856.390001 eV Core-core repulsion = 15148.229486 eV Total energy + Delta-G solvation = -2708.160514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72961 -38.08081 -37.32767 -34.93207 -34.03501 -32.79648 -29.40805 -27.99868 -27.16120 -24.38405 -23.12857 -22.68791 -20.83795 -19.33412 -18.37535 -17.85622 -17.04276 -16.62856 -16.13443 -15.69768 -15.51400 -15.04936 -14.70237 -14.57233 -14.30459 -13.89271 -13.46846 -13.07652 -12.89699 -12.82454 -12.50968 -12.36955 -12.22841 -12.14786 -12.02299 -11.78727 -11.63278 -11.21529 -10.85077 -10.42135 -9.71546 -9.44953 -8.95459 -8.23333 -5.99146 1.32314 1.40475 1.45122 1.53562 2.22818 2.39614 3.07843 3.12454 3.34086 3.67373 3.95270 4.03100 4.21110 4.23527 4.29409 4.39409 4.47854 4.54570 4.80815 4.89966 4.98654 5.00640 5.04670 5.09289 5.22309 5.27043 5.28947 5.44678 5.49043 5.89679 6.07200 6.17965 6.23928 6.44164 7.01447 7.17670 7.69938 8.33738 8.85048 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.008815 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.216786 B = 3175.627429 C = 3867.683598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 C -0.115 4.115 4 C -0.060 4.060 5 C 0.100 3.900 6 H 0.092 0.908 7 N -0.806 5.806 8 C 0.435 3.565 9 O -0.592 6.592 10 N -0.437 5.437 11 C -0.359 4.359 12 H 0.077 0.923 13 C 0.022 3.978 14 N -0.868 5.868 15 Si 0.968 3.032 16 H -0.293 1.293 17 H -0.281 1.281 18 H -0.255 1.255 19 C 0.045 3.955 20 C -0.174 4.174 21 C -0.176 4.176 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.335 0.665 30 H 0.336 0.664 31 H 0.258 0.742 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 11.759 6.138 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.118 4.118 3 C -0.172 4.172 4 C -0.099 4.099 5 C -0.016 4.016 6 H 0.110 0.890 7 N -0.332 5.332 8 C 0.223 3.777 9 O -0.474 6.474 10 N -0.157 5.157 11 C -0.487 4.487 12 H 0.095 0.905 13 C -0.184 4.184 14 N -0.503 5.503 15 Si 0.794 3.206 16 H -0.220 1.220 17 H -0.207 1.207 18 H -0.178 1.178 19 C -0.060 4.060 20 C -0.211 4.211 21 C -0.215 4.215 22 H 0.102 0.898 23 H 0.128 0.872 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.061 11.884 6.056 13.496 hybrid contribution 0.728 -2.403 -0.556 2.572 sum -1.333 9.481 5.500 11.041 Atomic orbital electron populations 1.23612 0.95155 1.01568 1.01792 1.21531 0.95517 0.94768 1.00031 1.20865 1.00356 0.93584 1.02370 1.20491 1.00355 0.95607 0.93420 1.21275 0.90047 0.93862 0.96410 0.89039 1.59342 1.19000 1.48650 1.06171 1.21959 0.83114 0.91691 0.80922 1.90475 1.73174 1.31711 1.52030 1.43104 1.05582 1.04675 1.62379 1.19147 1.20656 0.98333 1.10584 0.90523 1.25990 0.95742 1.02832 0.93869 1.69928 1.41125 1.35802 1.03479 0.85344 0.78124 0.79453 0.77728 1.22025 1.20663 1.17828 1.22001 0.96041 0.87943 0.99981 1.23151 0.92142 1.03234 1.02614 1.23334 1.03938 1.03144 0.91073 0.89819 0.87234 0.91496 0.90589 0.91260 0.93179 0.90285 0.85363 0.85164 0.93290 0.85983 0.90239 0.86411 0.85491 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.61 13.68 67.78 0.93 -3.69 16 2 C -0.12 -3.10 5.09 -16.48 -0.08 -3.18 16 3 C -0.12 -2.34 10.03 71.24 0.71 -1.62 16 4 C -0.06 -1.96 4.94 29.85 0.15 -1.81 16 5 C 0.10 3.81 2.42 44.17 0.11 3.91 16 6 H 0.09 3.32 6.47 -2.39 -0.02 3.31 16 7 N -0.81 -29.60 8.52 -171.80 -1.46 -31.07 16 8 C 0.44 21.87 6.21 87.66 0.54 22.41 16 9 O -0.59 -35.30 13.89 -3.06 -0.04 -35.34 16 10 N -0.44 -21.58 2.85 -613.14 -1.75 -23.33 16 11 C -0.36 -19.82 7.99 84.04 0.67 -19.15 16 12 H 0.08 4.10 7.19 -2.91 -0.02 4.08 16 13 C 0.02 1.26 4.35 84.92 0.37 1.63 16 14 N -0.87 -52.71 11.66 21.66 0.25 -52.46 16 15 Si 0.97 46.19 29.60 68.60 2.03 48.22 16 16 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 19 C 0.05 1.70 5.08 44.99 0.23 1.93 16 20 C -0.17 -5.79 9.80 30.62 0.30 -5.49 16 21 C -0.18 -5.34 9.97 30.62 0.31 -5.03 16 22 H 0.08 2.25 7.99 -2.91 -0.02 2.23 16 23 H 0.11 2.25 8.04 -2.91 -0.02 2.23 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.27 8.06 -2.38 -0.02 1.25 16 26 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 27 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 28 H 0.08 2.49 6.89 -2.39 -0.02 2.48 16 29 H 0.34 13.00 9.06 -89.69 -0.81 12.18 16 30 H 0.34 12.96 8.58 -89.69 -0.77 12.19 16 31 H 0.26 15.17 8.32 -92.71 -0.77 14.40 16 32 H 0.12 4.04 6.42 -2.38 -0.02 4.03 16 33 H 0.08 3.10 6.69 -2.38 -0.02 3.09 16 34 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -69.27 299.74 2.76 -66.51 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.50 Total: 37.56 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 4.23 Total: -10.10 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -2.96 Total: -106.85 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.04 Total: -35.34 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -69.27 2.76 -66.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574067419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.725 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds