Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99615 * 2 1 4 4 H 1.48497 * 109.47449 * 270.00020 * 3 2 1 5 5 H 1.48497 * 109.47202 * 30.00485 * 3 2 1 6 6 H 1.48503 * 109.46900 * 150.00108 * 3 2 1 7 7 C 1.37881 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99481 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46663 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47158 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99620 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99959 * 180.02562 * 11 10 9 14 14 C 1.47747 * 134.86589 * 0.04336 * 13 11 10 15 15 C 1.54482 * 85.89439 * 154.36859 * 14 13 11 16 16 H 1.08994 * 115.09837 * 139.58587 * 15 14 13 17 17 C 1.53119 * 111.18056 * 270.38390 * 15 14 13 18 18 C 1.53062 * 109.00044 * 140.41810 * 17 15 14 19 19 N 1.46481 * 108.74000 * 297.17553 * 18 17 15 20 20 C 1.45454 * 112.85607 * 65.76735 * 19 18 17 21 21 C 1.46991 * 134.86291 * 179.97438 * 13 11 10 22 22 H 1.09005 * 111.33578 * 93.60860 * 21 13 11 23 23 H 0.96997 * 120.00058 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46915 * 60.00499 * 9 7 2 25 25 H 1.08996 * 109.47050 * 300.00000 * 9 7 2 26 26 H 1.09000 * 109.47048 * 59.99806 * 10 9 7 27 27 H 1.08999 * 109.46997 * 300.00149 * 10 9 7 28 28 H 1.09000 * 113.80138 * 40.12659 * 14 13 11 29 29 H 1.08997 * 113.80405 * 268.61315 * 14 13 11 30 30 H 1.08996 * 109.55247 * 260.27629 * 17 15 14 31 31 H 1.09004 * 109.54610 * 20.56349 * 17 15 14 32 32 H 1.09002 * 109.58958 * 177.39989 * 18 17 15 33 33 H 1.08999 * 109.71263 * 57.02690 * 18 17 15 34 34 H 1.00903 * 111.00100 * 300.42892 * 19 18 17 35 35 H 1.09003 * 108.49911 * 189.96539 * 20 19 18 36 36 H 1.09000 * 108.37860 * 72.41687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 3.5939 -6.5133 0.0010 15 6 3.1297 -7.8279 0.6664 16 1 3.6326 -8.7278 0.3125 17 6 3.1111 -7.6993 2.1920 18 6 1.8765 -8.4209 2.7379 19 7 0.6770 -7.7586 2.2200 20 6 0.5371 -7.8899 0.7782 21 6 1.7821 -7.5532 -0.0007 22 1 1.7406 -7.9529 -1.0139 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6042 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 4.2138 -5.8893 0.6449 29 1 4.0143 -6.6490 -0.9954 30 1 4.0114 -8.1520 2.6073 31 1 3.0699 -6.6458 2.4687 32 1 1.8780 -8.3749 3.8269 33 1 1.8870 -9.4622 2.4160 34 1 0.6500 -6.7894 2.4991 35 1 -0.2665 -7.2319 0.4473 36 1 0.2553 -8.9184 0.5525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = -11.981796 kcal Electronic energy + Delta-G solvation = -17321.289810 eV Core-core repulsion = 14612.860460 eV Total energy + Delta-G solvation = -2708.429349 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03092 -37.95295 -35.58013 -33.45816 -31.67337 -31.12830 -29.20601 -26.64222 -25.58192 -23.61086 -22.22078 -21.54197 -19.80536 -18.13192 -16.98668 -16.33302 -15.81938 -15.72194 -15.09542 -14.59877 -14.41367 -14.31083 -13.67981 -13.22183 -12.96548 -12.51614 -12.20045 -12.12339 -11.87076 -11.47970 -11.27022 -11.16541 -10.93792 -10.92586 -10.70210 -10.59918 -9.96782 -9.65313 -9.14852 -8.92263 -8.68901 -8.33239 -8.19373 -5.96465 -4.01088 3.02070 3.24107 3.32841 3.38914 3.41555 4.11236 4.30798 4.45664 4.56789 4.72156 4.95875 5.08728 5.16915 5.21627 5.29198 5.38257 5.38368 5.52182 5.55343 5.67704 5.73017 5.84375 6.04013 6.13564 6.16235 6.22906 6.34745 6.89619 7.11710 7.35018 7.73483 7.85256 8.01970 8.07052 8.38000 8.75115 9.07161 9.62454 11.14484 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041811 B = 0.005255 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.517438 B = 5326.816587 C = 5512.290905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.531 6.531 13 N -0.650 5.650 14 C 0.104 3.896 15 C -0.119 4.119 16 H 0.093 0.907 17 C -0.140 4.140 18 C 0.060 3.940 19 N -0.682 5.682 20 C 0.056 3.944 21 C 0.104 3.896 22 H 0.082 0.918 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.347 0.653 35 H 0.093 0.907 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 -18.082 2.431 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.162 4.162 11 C 0.325 3.675 12 O -0.406 6.406 13 N -0.389 5.389 14 C -0.019 4.019 15 C -0.138 4.138 16 H 0.111 0.889 17 C -0.180 4.180 18 C -0.070 4.070 19 N -0.310 5.310 20 C -0.075 4.075 21 C -0.001 4.001 22 H 0.100 0.900 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.112 0.888 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.248 -18.269 2.559 19.821 hybrid contribution 1.327 1.591 -0.559 2.146 sum 8.575 -16.679 2.000 18.860 Atomic orbital electron populations 1.69997 1.06057 1.26606 1.50133 1.25022 0.94820 0.99212 0.95270 0.86589 0.79763 0.83505 0.78076 1.20659 1.21173 1.19908 1.21205 0.92876 0.91004 1.51482 0.92695 1.18902 0.93139 0.89324 0.98592 1.21817 1.00634 0.91635 1.02149 1.21311 0.88029 0.84049 0.74136 1.90664 1.14081 1.86780 1.49049 1.50296 1.08090 1.04767 1.75773 1.23358 0.84501 0.93695 1.00380 1.22989 0.96409 0.98174 0.96217 0.88881 1.22126 1.00206 1.02032 0.93605 1.21891 0.87395 0.98170 0.99524 1.59863 1.38861 1.21217 1.11090 1.21264 0.96756 1.02429 0.87036 1.22587 0.96199 0.81821 0.99491 0.89996 0.92922 0.95882 0.95796 0.90615 0.90583 0.89947 0.90063 0.90988 0.91237 0.90567 0.90945 0.83480 0.88824 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.12 -2.59 5.41 -27.88 -0.15 -2.74 16 11 C 0.53 10.65 7.98 -10.99 -0.09 10.56 16 12 O -0.53 -12.66 15.23 5.56 0.08 -12.58 16 13 N -0.65 -9.70 3.37 -173.24 -0.58 -10.28 16 14 C 0.10 1.11 7.97 -2.87 -0.02 1.09 16 15 C -0.12 -1.10 4.44 -89.91 -0.40 -1.50 16 16 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.14 -1.30 5.68 -26.64 -0.15 -1.45 16 18 C 0.06 0.58 6.53 -4.02 -0.03 0.56 16 19 N -0.68 -8.72 6.77 -116.44 -0.79 -9.51 16 20 C 0.06 0.73 6.13 -5.77 -0.04 0.69 16 21 C 0.10 1.26 4.29 -69.20 -0.30 0.97 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.35 5.09 8.83 -39.29 -0.35 4.74 16 35 H 0.09 1.53 6.84 -51.93 -0.36 1.17 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 293.60 15.07 4.42 4.42 Total: -1.00 -33.41 293.60 -8.55 -41.96 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.70 Total: 0.88 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.70 Total: -4.77 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.64 Total: -46.73 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.41 -8.55 -41.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.981 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds