Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99615 * 2 1 4 4 H 1.48497 * 109.47449 * 270.00020 * 3 2 1 5 5 H 1.48497 * 109.47202 * 30.00485 * 3 2 1 6 6 H 1.48503 * 109.46900 * 150.00108 * 3 2 1 7 7 C 1.37881 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99481 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46663 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47158 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99620 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99959 * 180.02562 * 11 10 9 14 14 C 1.47747 * 134.86589 * 0.04336 * 13 11 10 15 15 C 1.54482 * 85.89439 * 154.36859 * 14 13 11 16 16 H 1.08994 * 115.09837 * 139.58587 * 15 14 13 17 17 C 1.53119 * 111.18056 * 270.38390 * 15 14 13 18 18 C 1.53062 * 109.00044 * 140.41810 * 17 15 14 19 19 N 1.46481 * 108.74000 * 297.17553 * 18 17 15 20 20 C 1.45454 * 112.85607 * 65.76735 * 19 18 17 21 21 C 1.46991 * 134.86291 * 179.97438 * 13 11 10 22 22 H 1.09005 * 111.33578 * 93.60860 * 21 13 11 23 23 H 0.96997 * 120.00058 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46915 * 60.00499 * 9 7 2 25 25 H 1.08996 * 109.47050 * 300.00000 * 9 7 2 26 26 H 1.09000 * 109.47048 * 59.99806 * 10 9 7 27 27 H 1.08999 * 109.46997 * 300.00149 * 10 9 7 28 28 H 1.09000 * 113.80138 * 40.12659 * 14 13 11 29 29 H 1.08997 * 113.80405 * 268.61315 * 14 13 11 30 30 H 1.08996 * 109.55247 * 260.27629 * 17 15 14 31 31 H 1.09004 * 109.54610 * 20.56349 * 17 15 14 32 32 H 1.09002 * 109.58958 * 177.39989 * 18 17 15 33 33 H 1.08999 * 109.71263 * 57.02690 * 18 17 15 34 34 H 1.00903 * 111.00100 * 300.42892 * 19 18 17 35 35 H 1.09003 * 108.49911 * 189.96539 * 20 19 18 36 36 H 1.09000 * 108.37860 * 72.41687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 3.5939 -6.5133 0.0010 15 6 3.1297 -7.8279 0.6664 16 1 3.6326 -8.7278 0.3125 17 6 3.1111 -7.6993 2.1920 18 6 1.8765 -8.4209 2.7379 19 7 0.6770 -7.7586 2.2200 20 6 0.5371 -7.8899 0.7782 21 6 1.7821 -7.5532 -0.0007 22 1 1.7406 -7.9529 -1.0139 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6042 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 4.2138 -5.8893 0.6449 29 1 4.0143 -6.6490 -0.9954 30 1 4.0114 -8.1520 2.6073 31 1 3.0699 -6.6458 2.4687 32 1 1.8780 -8.3749 3.8269 33 1 1.8870 -9.4622 2.4160 34 1 0.6500 -6.7894 2.4991 35 1 -0.2665 -7.2319 0.4473 36 1 0.2553 -8.9184 0.5525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = -37.027590 kcal Electronic energy + Delta-G solvation = -17322.375877 eV Core-core repulsion = 14612.860460 eV Total energy + Delta-G solvation = -2709.515416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07985 -39.45026 -36.59855 -35.60311 -33.10716 -32.58234 -30.53753 -27.73214 -27.37295 -24.79083 -23.26907 -23.10582 -21.08175 -19.32523 -18.72223 -17.70486 -17.17717 -16.94850 -16.51331 -16.35776 -15.76510 -15.48817 -14.70915 -14.39140 -14.23537 -14.14964 -13.92207 -13.40368 -13.17665 -12.84351 -12.67629 -12.54714 -12.45379 -12.08916 -11.99177 -11.82844 -11.67951 -11.61364 -11.33365 -10.60358 -10.48555 -9.80788 -9.22751 -8.21065 -6.36117 1.39745 1.43058 1.54008 1.67183 1.87917 2.40560 3.11619 3.25687 3.35724 3.59855 3.81699 4.00441 4.06924 4.28977 4.38912 4.40314 4.42815 4.48946 4.52533 4.66630 4.71567 4.89887 4.94463 4.97737 5.02213 5.07630 5.19872 5.40867 5.44758 5.56802 5.80218 6.13246 6.19629 6.27186 6.70958 6.83306 7.25908 7.34695 8.91748 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041811 B = 0.005255 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.517438 B = 5326.816587 C = 5512.290905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.046 3.954 10 C -0.110 4.110 11 C 0.528 3.472 12 O -0.587 6.587 13 N -0.649 5.649 14 C 0.099 3.901 15 C -0.096 4.096 16 H 0.135 0.865 17 C -0.138 4.138 18 C 0.059 3.941 19 N -0.695 5.695 20 C 0.058 3.942 21 C 0.094 3.906 22 H 0.099 0.901 23 H 0.264 0.736 24 H -0.020 1.020 25 H -0.018 1.018 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.329 0.671 35 H 0.049 0.951 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 -19.471 2.455 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.008 3.992 10 C -0.149 4.149 11 C 0.320 3.680 12 O -0.468 6.468 13 N -0.386 5.386 14 C -0.022 4.022 15 C -0.114 4.114 16 H 0.153 0.847 17 C -0.177 4.177 18 C -0.070 4.070 19 N -0.322 5.322 20 C -0.072 4.072 21 C -0.010 4.010 22 H 0.117 0.883 23 H 0.072 0.928 24 H -0.002 1.002 25 H 0.000 1.000 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.897 -19.730 2.583 22.687 hybrid contribution 0.198 1.904 -0.547 1.991 sum 11.095 -17.826 2.035 21.095 Atomic orbital electron populations 1.70182 1.08382 1.27917 1.51272 1.26161 0.95732 1.04020 0.94440 0.85288 0.78638 0.77510 0.78607 1.19585 1.20996 1.17889 1.21677 0.93871 0.91592 1.51151 0.90804 1.18658 0.93572 0.92430 0.94526 1.21523 0.99181 0.90414 1.03825 1.20957 0.87243 0.85371 0.74425 1.90641 1.16303 1.87769 1.52046 1.50311 1.10620 1.04533 1.73139 1.23780 0.81940 0.94175 1.02311 1.22960 0.93733 0.98980 0.95766 0.84707 1.22121 1.01140 1.00696 0.93777 1.22024 0.86299 0.98744 0.99950 1.59905 1.41097 1.20173 1.10985 1.21190 0.96139 1.02480 0.87415 1.22949 0.97560 0.79689 1.00789 0.88349 0.92762 1.00194 1.00003 0.88763 0.88732 0.89153 0.87487 0.87941 0.93718 0.89946 0.89074 0.85422 0.93223 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.62 13.29 21.45 0.28 -60.33 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 3 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.65 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.05 2.65 4.26 29.85 0.13 2.78 16 10 C -0.11 -4.72 5.41 29.85 0.16 -4.56 16 11 C 0.53 21.86 7.98 87.66 0.70 22.56 16 12 O -0.59 -30.19 15.23 -3.02 -0.05 -30.24 16 13 N -0.65 -18.74 3.37 -820.39 -2.76 -21.50 16 14 C 0.10 1.76 7.97 86.46 0.69 2.45 16 15 C -0.10 -1.36 4.44 -10.28 -0.05 -1.41 16 16 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 17 C -0.14 -2.09 5.68 30.65 0.17 -1.91 16 18 C 0.06 1.00 6.53 86.40 0.56 1.56 16 19 N -0.69 -17.69 6.77 -522.32 -3.54 -21.22 16 20 C 0.06 1.51 6.13 85.82 0.53 2.04 16 21 C 0.09 2.10 4.29 43.91 0.19 2.29 16 22 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 24 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 25 H -0.02 -1.21 8.10 -2.39 -0.02 -1.22 16 26 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 27 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 28 H 0.09 1.51 7.95 -2.39 -0.02 1.49 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.92 7.69 -2.39 -0.02 0.90 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.33 10.18 8.83 -89.69 -0.79 9.38 16 35 H 0.05 1.74 6.84 -2.39 -0.02 1.72 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -78.67 293.60 0.01 -78.66 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.27 Total: 13.46 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 3.78 Total: -5.75 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -6.02 Total: -103.06 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -78.67 0.01 -78.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.629 kcal (2) G-P(sol) polarization free energy of solvation -78.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds