Wall clock time and date at job start Sun Mar 29 2020 22:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47099 * 239.99812 * 3 2 1 5 5 H 1.48501 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46937 * 120.00245 * 3 2 1 7 7 C 1.37876 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00476 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52093 * 180.02562 * 9 7 2 11 11 C 1.53045 * 109.27382 * 177.62700 * 10 9 7 12 12 N 1.46844 * 109.52143 * 300.82250 * 11 10 9 13 13 C 1.46906 * 110.99887 * 185.83959 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00048 * 13 12 11 15 15 N 1.27644 * 125.77132 * 359.69529 * 14 13 12 16 16 O 1.41378 * 113.17338 * 180.15439 * 15 14 13 17 17 C 1.44257 * 107.57111 * 343.05826 * 16 15 14 18 18 C 1.51681 * 125.76737 * 180.02562 * 14 13 12 19 19 C 1.46853 * 111.20068 * 61.74346 * 12 11 10 20 20 C 1.53033 * 109.52262 * 298.25891 * 19 12 11 21 21 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.51633 * 59.88062 * 9 7 2 23 23 H 1.08996 * 109.49890 * 57.69173 * 10 9 7 24 24 H 1.08989 * 109.54077 * 297.58534 * 10 9 7 25 25 H 1.09000 * 109.46052 * 180.80838 * 11 10 9 26 26 H 1.08998 * 109.45499 * 60.82968 * 11 10 9 27 27 H 1.08993 * 109.47164 * 289.99991 * 13 12 11 28 28 H 1.08996 * 109.46920 * 50.00025 * 13 12 11 29 29 H 1.08996 * 111.01363 * 266.82102 * 17 16 15 30 30 H 1.09004 * 111.04122 * 142.96593 * 17 16 15 31 31 H 1.09008 * 110.80738 * 313.52697 * 18 14 13 32 32 H 1.09000 * 110.80980 * 76.83620 * 18 14 13 33 33 H 1.09001 * 109.46125 * 58.27453 * 19 12 11 34 34 H 1.09003 * 109.46462 * 178.23846 * 19 12 11 35 35 H 1.09007 * 109.50330 * 299.23709 * 20 19 12 36 36 H 1.09002 * 109.50417 * 179.12117 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4750 -4.9852 0.0593 12 7 0.6531 -5.0195 1.2757 13 6 0.0066 -6.3288 1.4374 14 6 -0.6225 -6.4128 2.8042 15 7 -0.5988 -5.4980 3.6941 16 8 -1.2717 -5.8611 4.8833 17 6 -2.1144 -6.9917 4.5791 18 6 -1.3850 -7.6016 3.3577 19 6 -0.3407 -3.9383 1.2758 20 6 0.3750 -2.5859 1.2523 21 1 -0.4849 0.8401 0.0004 22 1 0.6221 -2.5566 -0.8890 23 1 2.8989 -3.5842 0.8679 24 1 2.8434 -3.6324 -0.9109 25 1 2.1802 -5.8162 0.0739 26 1 0.8314 -5.0703 -0.8163 27 1 -0.7628 -6.4507 0.6752 28 1 0.7515 -7.1173 1.3312 29 1 -3.1207 -6.6687 4.3125 30 1 -2.1397 -7.6960 5.4106 31 1 -2.1014 -7.9765 2.6266 32 1 -0.7001 -8.3913 3.6663 33 1 -0.9757 -4.0286 0.3945 34 1 -0.9542 -4.0090 2.1740 35 1 0.9997 -2.4892 2.1404 36 1 -0.3629 -1.7838 1.2366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617130980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:29 Heat of formation + Delta-G solvation = 21.425146 kcal Electronic energy + Delta-G solvation = -17309.647846 eV Core-core repulsion = 14602.667131 eV Total energy + Delta-G solvation = -2706.980716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05307 -38.10467 -34.45524 -32.73624 -31.00320 -30.55344 -29.69048 -27.15232 -24.67236 -23.24988 -22.01556 -21.49345 -19.50439 -18.54989 -16.63939 -16.29093 -16.16179 -15.37809 -14.63362 -14.47948 -14.27656 -13.62086 -13.20538 -13.01751 -12.67466 -12.40946 -12.27571 -12.03189 -11.93267 -11.37536 -11.29153 -10.90918 -10.75420 -10.57052 -10.29067 -10.15943 -9.90375 -9.45098 -9.19013 -8.91015 -8.62169 -8.21966 -7.80184 -5.90461 -3.95600 1.97637 3.22234 3.38064 3.42388 3.45372 3.84327 4.50924 4.51178 4.57891 4.67919 4.73718 5.26874 5.34398 5.38393 5.39584 5.41236 5.48505 5.73380 5.89001 5.99163 6.13692 6.24463 6.36423 6.67240 6.74654 6.90080 7.11033 7.21702 7.44829 7.59409 7.66456 7.74540 7.88860 8.13038 8.23675 8.55540 9.07687 9.68434 11.15826 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.005714 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.958530 B = 4898.954308 C = 5350.978268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.530 5.530 13 C 0.119 3.881 14 C 0.077 3.923 15 N -0.249 5.249 16 O -0.215 6.215 17 C 0.011 3.989 18 C -0.149 4.149 19 C 0.054 3.946 20 C -0.101 4.101 21 H 0.259 0.741 22 H 0.019 0.981 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.018 0.982 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -16.168 3.302 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.254 5.254 13 C -0.010 4.010 14 C -0.118 4.118 15 N 0.008 4.992 16 O -0.232 6.232 17 C -0.067 4.067 18 C -0.189 4.189 19 C -0.073 4.073 20 C -0.139 4.139 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.265 -14.864 4.190 15.785 hybrid contribution -0.564 -0.198 -0.802 1.000 sum -3.829 -15.063 3.388 15.907 Atomic orbital electron populations 1.69874 1.05879 1.26360 1.51054 1.24964 0.94826 0.98982 0.95218 0.86695 0.79618 0.83345 0.78534 1.20415 1.21403 1.20294 1.21166 0.92821 0.90693 1.50174 0.92823 1.18698 0.92701 0.91733 0.94006 1.21674 0.98742 0.93591 1.00379 1.22141 0.95630 0.99690 0.89164 1.61945 1.23845 1.00904 1.38749 1.20636 0.97320 0.94954 0.88119 1.26310 0.96379 0.91835 0.97264 1.78292 1.08709 1.19799 0.92362 1.91292 1.57089 1.48124 1.26655 1.24064 0.95495 0.89574 0.97552 1.23097 0.99518 0.98789 0.97519 1.22413 0.92989 0.92931 0.98939 1.21613 1.00144 0.92797 0.99323 0.93088 0.96245 0.92368 0.93073 0.92256 0.95586 0.92419 0.88405 0.90780 0.88153 0.88330 0.88250 0.96332 0.91416 0.93623 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 11.37 55.43 0.63 -25.43 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.34 8.57 -34.44 -0.29 -14.64 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 10 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 11 C 0.06 1.07 5.46 -3.83 -0.02 1.05 16 12 N -0.53 -9.54 4.50 -236.11 -1.06 -10.60 16 13 C 0.12 1.60 5.57 -4.97 -0.03 1.57 16 14 C 0.08 1.06 6.78 -78.58 -0.53 0.53 16 15 N -0.25 -4.38 10.11 35.65 0.36 -4.02 16 16 O -0.22 -3.50 12.52 -11.36 -0.14 -3.64 16 17 C 0.01 0.12 8.25 38.10 0.31 0.43 16 18 C -0.15 -1.39 7.07 -26.46 -0.19 -1.58 16 19 C 0.05 1.12 5.16 -3.83 -0.02 1.10 16 20 C -0.10 -2.50 5.12 -26.66 -0.14 -2.64 16 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.05 1.03 8.14 -51.94 -0.42 0.61 16 25 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.10 1.06 7.99 -51.93 -0.41 0.64 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.41 5.81 -51.93 -0.30 1.11 16 35 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 2.53 6.17 -51.93 -0.32 2.21 16 LS Contribution 287.71 15.07 4.34 4.34 Total: -1.00 -31.65 287.71 -7.88 -39.53 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.64 Total: -3.01 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.34 Total: -13.93 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: -0.07 Total: -40.06 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.14 Total: -3.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.65 -7.88 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617130980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.958 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds