Wall clock time and date at job start Sun Mar 29 2020 22:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47099 * 239.99812 * 3 2 1 5 5 H 1.48501 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46937 * 120.00245 * 3 2 1 7 7 C 1.37876 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00476 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52093 * 180.02562 * 9 7 2 11 11 C 1.53045 * 109.27382 * 177.62700 * 10 9 7 12 12 N 1.46844 * 109.52143 * 300.82250 * 11 10 9 13 13 C 1.46906 * 110.99887 * 185.83959 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00048 * 13 12 11 15 15 N 1.27644 * 125.77132 * 359.69529 * 14 13 12 16 16 O 1.41378 * 113.17338 * 180.15439 * 15 14 13 17 17 C 1.44257 * 107.57111 * 343.05826 * 16 15 14 18 18 C 1.51681 * 125.76737 * 180.02562 * 14 13 12 19 19 C 1.46853 * 111.20068 * 61.74346 * 12 11 10 20 20 C 1.53033 * 109.52262 * 298.25891 * 19 12 11 21 21 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.51633 * 59.88062 * 9 7 2 23 23 H 1.08996 * 109.49890 * 57.69173 * 10 9 7 24 24 H 1.08989 * 109.54077 * 297.58534 * 10 9 7 25 25 H 1.09000 * 109.46052 * 180.80838 * 11 10 9 26 26 H 1.08998 * 109.45499 * 60.82968 * 11 10 9 27 27 H 1.08993 * 109.47164 * 289.99991 * 13 12 11 28 28 H 1.08996 * 109.46920 * 50.00025 * 13 12 11 29 29 H 1.08996 * 111.01363 * 266.82102 * 17 16 15 30 30 H 1.09004 * 111.04122 * 142.96593 * 17 16 15 31 31 H 1.09008 * 110.80738 * 313.52697 * 18 14 13 32 32 H 1.09000 * 110.80980 * 76.83620 * 18 14 13 33 33 H 1.09001 * 109.46125 * 58.27453 * 19 12 11 34 34 H 1.09003 * 109.46462 * 178.23846 * 19 12 11 35 35 H 1.09007 * 109.50330 * 299.23709 * 20 19 12 36 36 H 1.09002 * 109.50417 * 179.12117 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4750 -4.9852 0.0593 12 7 0.6531 -5.0195 1.2757 13 6 0.0066 -6.3288 1.4374 14 6 -0.6225 -6.4128 2.8042 15 7 -0.5988 -5.4980 3.6941 16 8 -1.2717 -5.8611 4.8833 17 6 -2.1144 -6.9917 4.5791 18 6 -1.3850 -7.6016 3.3577 19 6 -0.3407 -3.9383 1.2758 20 6 0.3750 -2.5859 1.2523 21 1 -0.4849 0.8401 0.0004 22 1 0.6221 -2.5566 -0.8890 23 1 2.8989 -3.5842 0.8679 24 1 2.8434 -3.6324 -0.9109 25 1 2.1802 -5.8162 0.0739 26 1 0.8314 -5.0703 -0.8163 27 1 -0.7628 -6.4507 0.6752 28 1 0.7515 -7.1173 1.3312 29 1 -3.1207 -6.6687 4.3125 30 1 -2.1397 -7.6960 5.4106 31 1 -2.1014 -7.9765 2.6266 32 1 -0.7001 -8.3913 3.6663 33 1 -0.9757 -4.0286 0.3945 34 1 -0.9542 -4.0090 2.1740 35 1 0.9997 -2.4892 2.1404 36 1 -0.3629 -1.7838 1.2366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617130980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:29 Heat of formation + Delta-G solvation = -0.474160 kcal Electronic energy + Delta-G solvation = -17310.597471 eV Core-core repulsion = 14602.667131 eV Total energy + Delta-G solvation = -2707.930341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07942 -39.61612 -36.08869 -34.28380 -32.64777 -31.61390 -31.24097 -28.69850 -26.42301 -24.19198 -23.68173 -23.14416 -20.56918 -20.34694 -18.43414 -17.55410 -17.12641 -16.82957 -16.37388 -15.80740 -15.61072 -14.95107 -14.82721 -14.29449 -14.18864 -13.98196 -13.64874 -13.33692 -13.02614 -12.87265 -12.72314 -12.60785 -12.38232 -12.29161 -11.98603 -11.86341 -11.48898 -11.29525 -10.79305 -10.65909 -10.38436 -10.22195 -9.18784 -8.07387 -6.20750 0.98613 1.40315 1.42852 1.49921 2.27462 2.44137 2.76087 3.19416 3.45276 3.75095 3.80466 4.05831 4.22605 4.28754 4.34780 4.42483 4.56688 4.57361 4.65286 4.73898 4.79795 4.81865 4.92763 4.99763 5.08347 5.16755 5.24856 5.35392 5.59512 5.63135 6.00248 6.02100 6.23425 6.31359 6.41969 6.69657 6.91409 7.46897 8.97119 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.005714 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.958530 B = 4898.954308 C = 5350.978268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.101 4.101 11 C 0.068 3.932 12 N -0.546 5.546 13 C 0.116 3.884 14 C 0.084 3.916 15 N -0.315 5.315 16 O -0.250 6.250 17 C 0.000 4.000 18 C -0.137 4.137 19 C 0.072 3.928 20 C -0.091 4.091 21 H 0.259 0.741 22 H -0.008 1.008 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.019 0.981 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -18.724 2.792 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.059 4.059 12 N -0.271 5.271 13 C -0.012 4.012 14 C -0.110 4.110 15 N -0.061 5.061 16 O -0.266 6.266 17 C -0.077 4.077 18 C -0.176 4.176 19 C -0.056 4.056 20 C -0.129 4.129 21 H 0.068 0.932 22 H 0.010 0.990 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.929 -17.448 3.682 18.071 hybrid contribution -0.688 0.548 -0.645 1.091 sum -3.617 -16.901 3.037 17.548 Atomic orbital electron populations 1.70025 1.07232 1.27050 1.51623 1.25770 0.95682 1.02464 0.94885 0.85687 0.78445 0.79165 0.78815 1.19286 1.20958 1.19991 1.21596 0.93017 0.92393 1.50240 0.93063 1.18671 0.93213 0.92854 0.92728 1.21547 0.97944 0.94242 1.00190 1.22087 0.96051 0.98519 0.89268 1.61791 1.23706 1.02420 1.39168 1.20925 0.98924 0.92942 0.88424 1.26806 0.94857 0.92843 0.96517 1.78275 1.11549 1.22414 0.93817 1.91226 1.58163 1.50393 1.26828 1.24422 0.95131 0.88713 0.99414 1.23148 0.99941 0.97332 0.97224 1.22024 0.92983 0.91910 0.98655 1.21348 0.98962 0.94680 0.97925 0.93170 0.98987 0.93614 0.92249 0.88155 0.94877 0.89960 0.84567 0.90411 0.85498 0.85084 0.85786 0.96500 0.91748 0.96207 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.56 11.37 21.45 0.24 -55.31 16 2 C 0.01 0.59 5.31 84.65 0.45 1.04 16 3 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.53 -30.88 8.57 25.60 0.22 -30.66 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.30 2.16 -11.46 -0.02 2.27 16 10 C -0.10 -4.25 5.32 30.65 0.16 -4.09 16 11 C 0.07 2.19 5.46 86.33 0.47 2.66 16 12 N -0.55 -18.66 4.50 -900.91 -4.05 -22.71 16 13 C 0.12 2.66 5.57 85.56 0.48 3.13 16 14 C 0.08 2.10 6.78 46.90 0.32 2.42 16 15 N -0.32 -11.02 10.11 -40.62 -0.41 -11.43 16 16 O -0.25 -8.12 12.52 -38.29 -0.48 -8.60 16 17 C 0.00 0.01 8.25 72.59 0.60 0.60 16 18 C -0.14 -2.02 7.07 30.77 0.22 -1.80 16 19 C 0.07 3.01 5.16 86.32 0.45 3.46 16 20 C -0.09 -4.72 5.12 30.64 0.16 -4.56 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.10 2.48 8.02 -2.39 -0.02 2.46 16 26 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 28 H 0.14 2.15 7.99 -2.39 -0.02 2.13 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 2.75 5.81 -2.39 -0.01 2.73 16 35 H 0.02 1.07 8.14 -2.38 -0.02 1.06 16 36 H 0.05 3.22 6.17 -2.39 -0.01 3.21 16 Total: -1.00 -73.17 287.71 1.87 -71.30 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.05 Total: 4.76 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 3.49 Total: -25.52 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -4.22 Total: -89.45 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.48 Total: -8.60 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.17 1.87 -71.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617130980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.826 kcal (2) G-P(sol) polarization free energy of solvation -73.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds