Wall clock time and date at job start Sun Mar 29 2020 22:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30182 * 126.80281 * 2 1 4 4 O 1.20900 * 111.73993 * 179.76099 * 3 2 1 5 5 C 1.34365 * 111.60972 * 0.42356 * 4 3 2 6 6 C 1.35836 * 106.35638 * 359.58868 * 5 4 3 7 7 N 1.40716 * 128.05171 * 180.20518 * 6 5 4 8 8 C 1.46495 * 120.00152 * 0.02598 * 7 6 5 9 9 C 1.52996 * 109.47266 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47193 * 300.00076 * 9 8 7 11 11 C 1.52998 * 109.46937 * 60.00322 * 9 8 7 12 12 C 1.52995 * 109.47129 * 180.02562 * 9 8 7 13 13 C 1.50701 * 109.47238 * 179.97438 * 12 9 8 14 14 H 1.08003 * 119.99698 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00301 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46824 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46960 * 120.00374 * 17 15 13 20 20 H 1.48500 * 109.47045 * 240.00682 * 17 15 13 21 21 H 1.09000 * 109.47203 * 269.97813 * 1 2 3 22 22 H 1.09004 * 109.47210 * 29.97336 * 1 2 3 23 23 H 1.08998 * 109.47556 * 149.97369 * 1 2 3 24 24 H 1.08002 * 126.82520 * 179.85902 * 5 4 3 25 25 H 0.97001 * 119.99589 * 180.02562 * 7 6 5 26 26 H 1.09003 * 109.47482 * 300.00347 * 8 7 6 27 27 H 1.09004 * 109.47195 * 60.00223 * 8 7 6 28 28 H 1.09005 * 109.46580 * 59.99864 * 10 9 8 29 29 H 1.08997 * 109.46845 * 179.97438 * 10 9 8 30 30 H 1.08992 * 109.47133 * 300.00116 * 10 9 8 31 31 H 1.08995 * 109.47687 * 60.00264 * 11 9 8 32 32 H 1.09007 * 109.46826 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.46977 * 299.99598 * 11 9 8 34 34 H 1.09000 * 109.47656 * 299.99686 * 12 9 8 35 35 H 1.09004 * 109.47375 * 60.00114 * 12 9 8 36 36 H 0.97006 * 119.99579 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4543 0.7282 0.0047 5 6 3.6076 -0.6067 -0.0007 6 6 2.3563 -1.1354 -0.0004 7 7 1.9886 -2.4936 -0.0009 8 6 3.0218 -3.5322 -0.0014 9 6 2.3589 -4.9111 -0.0026 10 6 1.4875 -5.0591 1.2463 11 6 1.4884 -5.0573 -1.2522 12 6 3.4380 -5.9957 -0.0024 13 6 2.7851 -7.3539 -0.0029 14 1 1.7081 -7.4353 -0.0037 15 6 3.5625 -8.4926 -0.0034 16 7 4.8739 -8.3935 -0.0029 17 14 2.7531 -10.1762 -0.0048 18 1 1.2768 -10.0156 -0.0058 19 1 3.1700 -10.9248 -1.2176 20 1 3.1690 -10.9264 1.2075 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.5403 -1.1512 -0.0004 25 1 1.0510 -2.7422 -0.0010 26 1 3.6424 -3.4270 -0.8913 27 1 3.6424 -3.4278 0.8887 28 1 0.7188 -4.2863 1.2466 29 1 1.0150 -6.0413 1.2452 30 1 2.1078 -4.9549 2.1365 31 1 2.1091 -4.9519 -2.1419 32 1 1.0157 -6.0396 -1.2528 33 1 0.7196 -4.2846 -1.2518 34 1 4.0591 -5.8905 -0.8919 35 1 4.0579 -5.8914 0.8881 36 1 5.4208 -9.1946 -0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621051668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:25 Heat of formation + Delta-G solvation = 40.743632 kcal Electronic energy + Delta-G solvation = -16984.080657 eV Core-core repulsion = 14277.937654 eV Total energy + Delta-G solvation = -2706.143003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.59937 -37.98827 -35.39603 -33.36723 -32.25044 -30.05863 -28.55812 -27.05894 -26.54320 -26.02550 -23.06661 -21.77582 -20.81454 -18.30355 -17.53683 -17.34723 -16.40036 -15.94346 -14.82601 -14.41248 -14.29949 -13.83925 -13.41252 -13.08393 -12.96105 -12.75566 -12.62381 -12.33353 -12.11350 -11.40289 -11.14234 -11.07236 -10.87242 -10.73286 -10.52823 -10.44822 -10.27052 -9.87360 -9.57701 -9.25825 -8.97319 -8.41025 -7.45747 -6.05272 -4.06284 1.71697 2.55699 3.22179 3.26925 3.35408 3.37819 3.92269 4.38810 4.43284 4.60771 5.16385 5.30769 5.40474 5.44460 5.50119 5.54399 5.60182 5.72187 5.93011 5.99864 6.12509 6.12837 6.21626 6.33487 6.59462 6.59960 6.98369 7.02733 7.04999 7.37630 7.57035 7.69354 7.85354 7.93433 8.35762 8.46411 8.98547 9.57349 11.06265 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050768 B = 0.004811 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.401164 B = 5818.775537 C = 6168.511316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.029 4.029 3 N -0.356 5.356 4 O 0.102 5.898 5 C -0.162 4.162 6 C 0.104 3.896 7 N -0.719 5.719 8 C 0.138 3.862 9 C -0.070 4.070 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.511 4.511 14 H 0.060 0.940 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.209 0.791 25 H 0.402 0.598 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 12.290 0.014 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.190 4.190 3 N -0.060 5.060 4 O 0.032 5.968 5 C -0.250 4.250 6 C -0.002 4.002 7 N -0.355 5.355 8 C 0.015 3.985 9 C -0.070 4.070 10 C -0.183 4.183 11 C -0.183 4.183 12 C -0.002 4.002 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.226 0.774 25 H 0.239 0.761 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.122 13.414 0.011 14.744 hybrid contribution -0.578 -2.108 0.000 2.186 sum -6.699 11.305 0.011 13.141 Atomic orbital electron populations 1.20046 0.86379 1.03321 1.02943 1.23175 0.98542 0.88172 1.09079 1.73676 0.89930 1.24167 1.18181 1.84733 1.20420 1.22754 1.68847 1.24815 0.99497 0.82810 1.17844 1.18708 0.92271 0.87204 1.02051 1.44192 1.09065 0.99060 1.83206 1.21598 0.89743 0.86810 1.00383 1.20852 0.97854 0.93194 0.95131 1.21744 0.98381 1.01012 0.97200 1.21743 0.98380 1.01011 0.97200 1.19103 0.92259 0.91436 0.97385 1.21219 0.92951 0.90582 1.50177 0.92215 1.25005 0.94793 0.99161 0.95488 1.69969 1.03730 1.28771 1.50974 0.86596 0.79594 0.84602 0.77573 1.19788 1.21101 1.21095 0.90616 0.90723 0.90640 0.77419 0.76145 0.92731 0.92720 0.95202 0.91517 0.93419 0.93417 0.91517 0.95214 0.96377 0.96375 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.48 36.01 0.38 -0.33 16 2 C -0.03 -0.39 7.34 -81.93 -0.60 -0.99 16 3 N -0.36 -5.28 12.06 33.56 0.40 -4.88 16 4 O 0.10 1.44 11.21 16.31 0.18 1.62 16 5 C -0.16 -2.15 11.70 29.87 0.35 -1.80 16 6 C 0.10 1.45 7.22 -83.28 -0.60 0.85 16 7 N -0.72 -9.97 5.20 -58.35 -0.30 -10.27 16 8 C 0.14 2.17 4.68 -4.05 -0.02 2.15 16 9 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 10 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 11 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 12 C 0.04 0.84 4.04 -27.88 -0.11 0.72 16 13 C -0.51 -13.24 7.65 -34.44 -0.26 -13.50 16 14 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 17 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.21 2.26 8.00 -52.49 -0.42 1.84 16 25 H 0.40 5.21 6.24 -40.82 -0.25 4.96 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 33 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -28.67 296.23 -5.30 -33.97 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.31 Total: 0.87 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.45 Total: -16.52 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.84 Total: -40.22 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.18 Total: 1.62 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.67 -5.30 -33.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621051668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.711 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds