Wall clock time and date at job start Sun Mar 29 2020 22:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30182 * 126.80281 * 2 1 4 4 O 1.20900 * 111.73993 * 179.76099 * 3 2 1 5 5 C 1.34365 * 111.60972 * 0.42356 * 4 3 2 6 6 C 1.35836 * 106.35638 * 359.58868 * 5 4 3 7 7 N 1.40716 * 128.05171 * 180.20518 * 6 5 4 8 8 C 1.46495 * 120.00152 * 0.02598 * 7 6 5 9 9 C 1.52996 * 109.47266 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47193 * 300.00076 * 9 8 7 11 11 C 1.52998 * 109.46937 * 60.00322 * 9 8 7 12 12 C 1.52995 * 109.47129 * 180.02562 * 9 8 7 13 13 C 1.50701 * 109.47238 * 179.97438 * 12 9 8 14 14 H 1.08003 * 119.99698 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00301 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46824 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46960 * 120.00374 * 17 15 13 20 20 H 1.48500 * 109.47045 * 240.00682 * 17 15 13 21 21 H 1.09000 * 109.47203 * 269.97813 * 1 2 3 22 22 H 1.09004 * 109.47210 * 29.97336 * 1 2 3 23 23 H 1.08998 * 109.47556 * 149.97369 * 1 2 3 24 24 H 1.08002 * 126.82520 * 179.85902 * 5 4 3 25 25 H 0.97001 * 119.99589 * 180.02562 * 7 6 5 26 26 H 1.09003 * 109.47482 * 300.00347 * 8 7 6 27 27 H 1.09004 * 109.47195 * 60.00223 * 8 7 6 28 28 H 1.09005 * 109.46580 * 59.99864 * 10 9 8 29 29 H 1.08997 * 109.46845 * 179.97438 * 10 9 8 30 30 H 1.08992 * 109.47133 * 300.00116 * 10 9 8 31 31 H 1.08995 * 109.47687 * 60.00264 * 11 9 8 32 32 H 1.09007 * 109.46826 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.46977 * 299.99598 * 11 9 8 34 34 H 1.09000 * 109.47656 * 299.99686 * 12 9 8 35 35 H 1.09004 * 109.47375 * 60.00114 * 12 9 8 36 36 H 0.97006 * 119.99579 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4543 0.7282 0.0047 5 6 3.6076 -0.6067 -0.0007 6 6 2.3563 -1.1354 -0.0004 7 7 1.9886 -2.4936 -0.0009 8 6 3.0218 -3.5322 -0.0014 9 6 2.3589 -4.9111 -0.0026 10 6 1.4875 -5.0591 1.2463 11 6 1.4884 -5.0573 -1.2522 12 6 3.4380 -5.9957 -0.0024 13 6 2.7851 -7.3539 -0.0029 14 1 1.7081 -7.4353 -0.0037 15 6 3.5625 -8.4926 -0.0034 16 7 4.8739 -8.3935 -0.0029 17 14 2.7531 -10.1762 -0.0048 18 1 1.2768 -10.0156 -0.0058 19 1 3.1700 -10.9248 -1.2176 20 1 3.1690 -10.9264 1.2075 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.5403 -1.1512 -0.0004 25 1 1.0510 -2.7422 -0.0010 26 1 3.6424 -3.4270 -0.8913 27 1 3.6424 -3.4278 0.8887 28 1 0.7188 -4.2863 1.2466 29 1 1.0150 -6.0413 1.2452 30 1 2.1078 -4.9549 2.1365 31 1 2.1091 -4.9519 -2.1419 32 1 1.0157 -6.0396 -1.2528 33 1 0.7196 -4.2846 -1.2518 34 1 4.0591 -5.8905 -0.8919 35 1 4.0579 -5.8914 0.8881 36 1 5.4208 -9.1946 -0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621051668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:25 Heat of formation + Delta-G solvation = 23.978059 kcal Electronic energy + Delta-G solvation = -16984.807667 eV Core-core repulsion = 14277.937654 eV Total energy + Delta-G solvation = -2706.870013 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.65528 -39.37558 -36.63404 -34.79141 -33.88524 -31.24280 -29.46989 -28.87585 -27.94240 -27.36035 -24.85923 -22.86893 -21.95788 -19.67290 -18.74193 -18.41533 -18.33955 -17.09289 -16.51702 -15.84547 -15.66395 -15.10240 -14.41372 -14.34034 -14.27739 -14.03369 -13.92918 -13.76689 -13.28949 -12.97557 -12.69330 -12.68974 -12.32115 -12.19590 -12.17693 -11.90539 -11.83337 -11.35014 -10.95825 -10.81526 -10.62296 -10.49992 -8.55535 -8.13441 -6.19786 0.67100 1.41390 1.43613 1.51201 1.54136 2.12569 2.45125 2.87889 3.21787 3.42328 3.64901 4.00865 4.13947 4.19655 4.31179 4.60103 4.69208 4.72629 4.76476 4.78895 4.80710 4.97656 5.00107 5.14396 5.15188 5.21528 5.46463 5.52458 5.54683 5.58142 5.83694 5.92138 6.17552 6.36420 6.80013 6.95605 7.41997 7.47840 8.98933 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050768 B = 0.004811 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.401164 B = 5818.775537 C = 6168.511316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 N -0.379 5.379 4 O 0.091 5.909 5 C -0.158 4.158 6 C 0.087 3.913 7 N -0.712 5.712 8 C 0.151 3.849 9 C -0.063 4.063 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.040 3.960 13 C -0.513 4.513 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.952 3.048 18 H -0.260 1.260 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.227 0.773 25 H 0.409 0.591 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.063 0.937 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 12.744 0.021 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.187 4.187 3 N -0.085 5.085 4 O 0.025 5.975 5 C -0.245 4.245 6 C -0.018 4.018 7 N -0.350 5.350 8 C 0.027 3.973 9 C -0.064 4.064 10 C -0.178 4.178 11 C -0.178 4.178 12 C 0.002 3.998 13 C -0.552 4.552 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.778 3.222 18 H -0.184 1.184 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.243 0.757 25 H 0.246 0.754 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.057 13.886 0.018 16.054 hybrid contribution 0.041 -2.196 -0.001 2.197 sum -8.015 11.690 0.017 14.174 Atomic orbital electron populations 1.20218 0.84073 1.04453 1.04113 1.23707 1.00047 0.87501 1.07417 1.73682 0.90243 1.24963 1.19623 1.84721 1.20458 1.23123 1.69187 1.25274 1.00290 0.82658 1.16290 1.18830 0.92723 0.87197 1.03086 1.43887 1.08777 0.98603 1.83730 1.21264 0.89844 0.86031 1.00149 1.20653 0.96571 0.92713 0.96421 1.21671 0.98731 1.01268 0.96128 1.21671 0.98734 1.01272 0.96123 1.18978 0.93172 0.92889 0.94719 1.21634 0.93417 0.91609 1.48495 0.91418 1.25856 0.95279 1.03135 0.95582 1.70101 1.05230 1.29670 1.52733 0.85579 0.79249 0.80027 0.77299 1.18394 1.21069 1.21058 0.89329 0.89960 0.89167 0.75669 0.75351 0.93087 0.93078 0.91807 0.93142 0.94217 0.94212 0.93142 0.91804 0.99066 0.99065 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.48 71.24 0.75 -0.48 16 2 C -0.03 -0.63 7.34 43.68 0.32 -0.31 16 3 N -0.38 -10.71 12.06 -48.95 -0.59 -11.30 16 4 O 0.09 2.48 11.21 68.55 0.77 3.25 16 5 C -0.16 -3.95 11.70 67.26 0.79 -3.16 16 6 C 0.09 2.25 7.22 38.03 0.27 2.52 16 7 N -0.71 -17.90 5.20 -338.51 -1.76 -19.66 16 8 C 0.15 4.55 4.68 86.38 0.40 4.95 16 9 C -0.06 -2.22 0.54 -52.18 -0.03 -2.24 16 10 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 11 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 12 C 0.04 1.91 4.04 29.85 0.12 2.03 16 13 C -0.51 -26.71 7.65 25.60 0.20 -26.51 16 14 H 0.07 3.36 5.68 -2.91 -0.02 3.34 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 16 N -0.94 -55.14 13.29 21.45 0.28 -54.85 16 17 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 24 H 0.23 4.56 8.00 -2.91 -0.02 4.54 16 25 H 0.41 9.11 6.24 -92.71 -0.58 8.53 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.06 1.63 6.86 -2.38 -0.02 1.61 16 29 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.79 6.62 -2.38 -0.02 1.78 16 33 H 0.06 1.63 6.86 -2.39 -0.02 1.61 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 36 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -61.64 296.23 5.66 -55.97 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.49 Total: 11.28 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.44 Total: -29.50 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.07 Total: -85.81 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.77 Total: 3.25 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.64 5.66 -55.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621051668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.951 kcal (2) G-P(sol) polarization free energy of solvation -61.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds