Wall clock time and date at job start Sun Mar 29 2020 21:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00229 * 3 2 1 5 5 H 1.48503 * 109.46921 * 29.99649 * 3 2 1 6 6 H 1.48492 * 109.47124 * 149.99966 * 3 2 1 7 7 C 1.37878 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00398 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99585 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.53712 * 60.10086 * 9 7 2 11 11 C 1.53122 * 109.50482 * 300.00091 * 9 7 2 12 12 C 1.53110 * 109.16165 * 182.40794 * 11 9 7 13 13 C 1.53033 * 109.28139 * 57.65260 * 12 11 9 14 14 N 1.46842 * 109.52458 * 300.82350 * 13 12 11 15 15 C 1.46904 * 111.00055 * 185.83971 * 14 13 12 16 16 C 1.50695 * 109.47435 * 66.04487 * 15 14 13 17 17 N 1.27643 * 125.76954 * 0.02562 * 16 15 14 18 18 O 1.41372 * 113.17468 * 179.65154 * 17 16 15 19 19 C 1.44781 * 107.53629 * 17.41296 * 18 17 16 20 20 C 1.51683 * 125.76970 * 179.97438 * 16 15 14 21 21 C 1.46842 * 111.20098 * 61.73861 * 14 13 12 22 22 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.52293 * 62.49955 * 11 9 7 24 24 H 1.09000 * 109.57742 * 302.34290 * 11 9 7 25 25 H 1.09002 * 109.50472 * 297.71057 * 12 11 9 26 26 H 1.09002 * 109.50744 * 177.59911 * 12 11 9 27 27 H 1.08999 * 109.46639 * 180.80497 * 13 12 11 28 28 H 1.09006 * 109.46249 * 60.83982 * 13 12 11 29 29 H 1.08998 * 109.46729 * 306.04005 * 15 14 13 30 30 H 1.09003 * 109.47216 * 186.04955 * 15 14 13 31 31 H 1.08999 * 111.17501 * 216.85528 * 19 18 17 32 32 H 1.09001 * 111.07843 * 92.81999 * 19 18 17 33 33 H 1.09002 * 110.80739 * 282.98994 * 20 16 15 34 34 H 1.09004 * 110.80811 * 46.30164 * 20 16 15 35 35 H 1.09004 * 109.46055 * 58.27491 * 21 14 13 36 36 H 1.08995 * 109.46761 * 178.23964 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8764 -0.6814 0.8900 11 6 4.0223 -0.4732 -1.2507 12 6 5.5522 -0.5301 -1.2741 13 6 6.0040 -1.9919 -1.2413 14 7 5.4908 -2.6371 -0.0262 15 6 6.0189 -4.0013 0.1087 16 6 7.5077 -3.9436 0.3349 17 7 8.2116 -2.8809 0.4014 18 8 9.5833 -3.1355 0.6298 19 6 9.8282 -4.5260 0.3090 20 6 8.4229 -5.1385 0.5231 21 6 4.0226 -2.6366 -0.0043 22 1 -0.4850 0.8400 0.0004 23 1 3.6968 0.5669 -1.2302 24 1 3.6260 -0.9613 -2.1411 25 1 5.9492 -0.0070 -0.4041 26 1 5.9202 -0.0557 -2.1838 27 1 7.0931 -2.0356 -1.2434 28 1 5.6182 -2.5110 -2.1188 29 1 5.8112 -4.5629 -0.8020 30 1 5.5415 -4.4936 0.9560 31 1 10.5541 -4.9659 0.9928 32 1 10.1505 -4.6386 -0.7261 33 1 8.3267 -5.5451 1.5298 34 1 8.2170 -5.9053 -0.2238 35 1 3.6460 -3.1527 -0.8875 36 1 3.6725 -3.1485 0.8920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647733513.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:59 Heat of formation + Delta-G solvation = 28.163234 kcal Electronic energy + Delta-G solvation = -17372.586080 eV Core-core repulsion = 14665.897550 eV Total energy + Delta-G solvation = -2706.688530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12955 -38.35138 -34.56525 -32.68940 -31.66191 -30.71941 -30.17672 -26.94748 -24.92139 -23.49957 -22.44036 -21.33501 -19.55719 -18.84571 -16.80922 -16.59660 -16.24739 -15.68286 -14.75573 -14.57624 -14.16812 -13.79828 -13.54682 -13.16569 -12.96328 -12.73103 -12.42279 -12.12210 -12.07977 -11.95247 -11.41145 -11.11643 -11.01763 -10.58032 -10.43812 -10.04943 -9.92104 -9.66658 -9.41031 -9.06112 -8.88429 -8.48665 -7.89722 -6.04864 -4.04037 1.86214 3.12074 3.32443 3.43899 3.48643 3.76065 4.41794 4.45949 4.46112 4.57834 4.64850 5.18548 5.27417 5.29396 5.32487 5.33549 5.42194 5.57154 5.63619 5.86244 5.91212 6.06104 6.17558 6.29829 6.36093 6.53686 6.64655 6.82414 6.89211 7.21006 7.36285 7.42841 7.61413 7.67289 7.87192 8.53422 8.97670 9.58395 11.08264 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048166 B = 0.005867 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.180515 B = 4771.035428 C = 5078.395235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.037 0.963 11 C -0.123 4.123 12 C -0.117 4.117 13 C 0.060 3.940 14 N -0.536 5.536 15 C 0.119 3.881 16 C 0.083 3.917 17 N -0.258 5.258 18 O -0.217 6.217 19 C 0.012 3.988 20 C -0.151 4.151 21 C 0.077 3.923 22 H 0.263 0.737 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.043 -10.629 -1.372 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.001 3.999 10 H 0.055 0.945 11 C -0.160 4.160 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.260 5.260 15 C -0.010 4.010 16 C -0.112 4.112 17 N -0.002 5.002 18 O -0.234 6.234 19 C -0.066 4.066 20 C -0.191 4.191 21 C -0.049 4.049 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.232 -9.024 -0.930 18.595 hybrid contribution 0.202 -0.566 -0.763 0.971 sum 16.434 -9.589 -1.693 19.103 Atomic orbital electron populations 1.69899 1.06312 1.26949 1.50962 1.24969 0.94649 0.99057 0.94343 0.86838 0.80097 0.83425 0.77900 1.20723 1.22646 1.18703 1.20987 0.88720 0.94476 1.51064 0.90943 1.19159 0.95897 0.90939 0.93894 0.94525 1.22033 0.92779 1.00233 1.00970 1.21610 0.97760 0.95137 1.00976 1.22114 0.99549 0.95568 0.89515 1.61906 1.10573 1.14611 1.38935 1.20660 0.85509 0.92743 1.02071 1.26380 0.97669 0.91889 0.95243 1.78185 0.88660 1.22274 1.11049 1.91357 1.18906 1.25985 1.87106 1.24153 0.96814 0.83673 1.01962 1.23098 0.92019 0.98935 1.05036 1.22125 0.82754 1.00135 0.99887 0.92700 0.93555 0.92616 0.91600 0.92872 0.90761 0.95721 0.92149 0.87795 0.88035 0.90766 0.88085 0.88216 0.95272 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 3 Si 0.89 22.46 24.35 -169.99 -4.14 18.32 16 4 H -0.28 -6.92 6.89 56.52 0.39 -6.53 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 7 C -0.51 -14.33 9.15 -34.44 -0.31 -14.64 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 10 H 0.04 0.93 7.21 -51.93 -0.37 0.55 16 11 C -0.12 -2.71 4.73 -26.61 -0.13 -2.83 16 12 C -0.12 -2.21 6.09 -26.66 -0.16 -2.37 16 13 C 0.06 1.03 5.16 -3.84 -0.02 1.01 16 14 N -0.54 -9.27 4.49 -236.12 -1.06 -10.33 16 15 C 0.12 1.54 5.57 -4.98 -0.03 1.51 16 16 C 0.08 1.05 6.79 -78.58 -0.53 0.52 16 17 N -0.26 -4.10 10.12 35.65 0.36 -3.74 16 18 O -0.22 -3.20 12.54 -11.36 -0.14 -3.34 16 19 C 0.01 0.11 8.28 38.10 0.32 0.43 16 20 C -0.15 -1.28 7.06 -26.46 -0.19 -1.47 16 21 C 0.08 1.52 4.68 -3.84 -0.02 1.50 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.05 1.09 3.35 -51.93 -0.17 0.91 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.24 5.83 -51.93 -0.30 0.93 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 30 H 0.10 1.17 7.98 -51.93 -0.41 0.76 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.32 8.01 -51.93 -0.42 0.91 16 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -32.33 280.87 -6.82 -39.15 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.51 Total: -3.29 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.34 Total: -14.07 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.07 Total: -41.01 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.14 Total: -3.34 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.33 -6.82 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647733513.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.312 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds