Wall clock time and date at job start Sun Mar 29 2020 21:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00229 * 3 2 1 5 5 H 1.48503 * 109.46921 * 29.99649 * 3 2 1 6 6 H 1.48492 * 109.47124 * 149.99966 * 3 2 1 7 7 C 1.37878 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00398 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99585 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.53712 * 60.10086 * 9 7 2 11 11 C 1.53122 * 109.50482 * 300.00091 * 9 7 2 12 12 C 1.53110 * 109.16165 * 182.40794 * 11 9 7 13 13 C 1.53033 * 109.28139 * 57.65260 * 12 11 9 14 14 N 1.46842 * 109.52458 * 300.82350 * 13 12 11 15 15 C 1.46904 * 111.00055 * 185.83971 * 14 13 12 16 16 C 1.50695 * 109.47435 * 66.04487 * 15 14 13 17 17 N 1.27643 * 125.76954 * 0.02562 * 16 15 14 18 18 O 1.41372 * 113.17468 * 179.65154 * 17 16 15 19 19 C 1.44781 * 107.53629 * 17.41296 * 18 17 16 20 20 C 1.51683 * 125.76970 * 179.97438 * 16 15 14 21 21 C 1.46842 * 111.20098 * 61.73861 * 14 13 12 22 22 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.52293 * 62.49955 * 11 9 7 24 24 H 1.09000 * 109.57742 * 302.34290 * 11 9 7 25 25 H 1.09002 * 109.50472 * 297.71057 * 12 11 9 26 26 H 1.09002 * 109.50744 * 177.59911 * 12 11 9 27 27 H 1.08999 * 109.46639 * 180.80497 * 13 12 11 28 28 H 1.09006 * 109.46249 * 60.83982 * 13 12 11 29 29 H 1.08998 * 109.46729 * 306.04005 * 15 14 13 30 30 H 1.09003 * 109.47216 * 186.04955 * 15 14 13 31 31 H 1.08999 * 111.17501 * 216.85528 * 19 18 17 32 32 H 1.09001 * 111.07843 * 92.81999 * 19 18 17 33 33 H 1.09002 * 110.80739 * 282.98994 * 20 16 15 34 34 H 1.09004 * 110.80811 * 46.30164 * 20 16 15 35 35 H 1.09004 * 109.46055 * 58.27491 * 21 14 13 36 36 H 1.08995 * 109.46761 * 178.23964 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8764 -0.6814 0.8900 11 6 4.0223 -0.4732 -1.2507 12 6 5.5522 -0.5301 -1.2741 13 6 6.0040 -1.9919 -1.2413 14 7 5.4908 -2.6371 -0.0262 15 6 6.0189 -4.0013 0.1087 16 6 7.5077 -3.9436 0.3349 17 7 8.2116 -2.8809 0.4014 18 8 9.5833 -3.1355 0.6298 19 6 9.8282 -4.5260 0.3090 20 6 8.4229 -5.1385 0.5231 21 6 4.0226 -2.6366 -0.0043 22 1 -0.4850 0.8400 0.0004 23 1 3.6968 0.5669 -1.2302 24 1 3.6260 -0.9613 -2.1411 25 1 5.9492 -0.0070 -0.4041 26 1 5.9202 -0.0557 -2.1838 27 1 7.0931 -2.0356 -1.2434 28 1 5.6182 -2.5110 -2.1188 29 1 5.8112 -4.5629 -0.8020 30 1 5.5415 -4.4936 0.9560 31 1 10.5541 -4.9659 0.9928 32 1 10.1505 -4.6386 -0.7261 33 1 8.3267 -5.5451 1.5298 34 1 8.2170 -5.9053 -0.2238 35 1 3.6460 -3.1527 -0.8875 36 1 3.6725 -3.1485 0.8920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647733513.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:59 Heat of formation + Delta-G solvation = 4.669584 kcal Electronic energy + Delta-G solvation = -17373.604841 eV Core-core repulsion = 14665.897550 eV Total energy + Delta-G solvation = -2707.707291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07039 -39.76898 -36.04449 -34.40927 -33.05281 -32.03063 -31.38933 -28.16411 -26.84071 -24.48572 -23.65652 -23.01636 -20.55924 -20.50563 -18.82160 -17.56539 -17.20323 -17.07399 -16.10662 -15.87308 -15.63418 -15.28533 -14.98662 -14.80722 -14.16495 -14.01295 -13.87847 -13.39154 -13.37360 -12.92968 -12.78397 -12.70105 -12.38407 -12.20916 -11.88627 -11.79911 -11.49776 -11.44008 -10.99573 -10.80812 -10.60655 -10.25342 -9.21104 -8.29833 -6.32003 0.95311 1.29360 1.36454 1.47169 2.25892 2.33000 2.71955 3.06588 3.44104 3.74721 3.76227 4.00753 4.05967 4.12902 4.23431 4.39994 4.45867 4.48537 4.60358 4.68069 4.73207 4.76458 4.80098 4.81338 4.95010 5.01055 5.11678 5.18208 5.23491 5.45724 5.63648 5.72926 6.14275 6.16567 6.35207 6.65174 6.75336 7.34003 8.86692 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048166 B = 0.005867 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.180515 B = 4771.035428 C = 5078.395235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.018 3.982 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.300 1.300 6 H -0.255 1.255 7 C -0.514 4.514 8 H 0.041 0.959 9 C 0.018 3.982 10 H 0.019 0.981 11 C -0.120 4.120 12 C -0.113 4.113 13 C 0.066 3.934 14 N -0.552 5.552 15 C 0.116 3.884 16 C 0.089 3.911 17 N -0.311 5.311 18 O -0.248 6.248 19 C 0.004 3.996 20 C -0.141 4.141 21 C 0.090 3.910 22 H 0.265 0.735 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.030 0.970 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.218 -11.976 -1.891 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.180 1.180 7 C -0.552 4.552 8 H 0.060 0.940 9 C -0.001 4.001 10 H 0.037 0.963 11 C -0.158 4.158 12 C -0.151 4.151 13 C -0.062 4.062 14 N -0.276 5.276 15 C -0.012 4.012 16 C -0.105 4.105 17 N -0.056 5.056 18 O -0.265 6.265 19 C -0.073 4.073 20 C -0.181 4.181 21 C -0.037 4.037 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.048 0.952 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.440 -10.395 -1.453 21.218 hybrid contribution -0.482 -0.270 -0.580 0.801 sum 17.958 -10.666 -2.033 20.985 Atomic orbital electron populations 1.70027 1.07954 1.27880 1.53019 1.25734 0.95284 1.02546 0.94394 0.85893 0.78925 0.79380 0.78492 1.19448 1.22742 1.17990 1.21316 0.91183 0.93148 1.49568 0.94033 1.19084 0.93076 0.93992 0.93998 0.96328 1.21922 0.95272 0.98849 0.99760 1.21571 0.95026 0.96861 1.01605 1.22058 0.99933 0.94334 0.89883 1.61770 1.08702 1.17801 1.39341 1.20848 0.85731 0.90523 1.04106 1.26644 0.97526 0.93277 0.93039 1.78156 0.89558 1.24277 1.13579 1.91298 1.18533 1.29065 1.87572 1.24489 0.98024 0.81464 1.03308 1.23150 0.90053 0.97857 1.07031 1.21806 0.84684 0.97147 1.00072 0.92599 0.95050 0.92709 0.92880 0.90524 0.89957 0.94620 0.89494 0.86022 0.85715 0.89765 0.86424 0.85058 0.95153 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.02 1.03 5.45 84.65 0.46 1.49 16 3 Si 0.94 46.82 24.35 68.60 1.67 48.50 16 4 H -0.27 -12.67 6.89 99.48 0.69 -11.99 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.26 -12.25 6.53 99.48 0.65 -11.60 16 7 C -0.51 -29.17 9.15 25.60 0.23 -28.94 16 8 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 9 C 0.02 0.84 1.85 -11.48 -0.02 0.81 16 10 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 11 C -0.12 -5.19 4.73 30.67 0.15 -5.04 16 12 C -0.11 -4.05 6.09 30.64 0.19 -3.86 16 13 C 0.07 2.08 5.16 86.33 0.45 2.53 16 14 N -0.55 -17.93 4.49 -900.95 -4.05 -21.98 16 15 C 0.12 2.62 5.57 85.55 0.48 3.10 16 16 C 0.09 1.99 6.79 46.90 0.32 2.31 16 17 N -0.31 -9.34 10.12 -40.62 -0.41 -9.75 16 18 O -0.25 -6.96 12.54 -38.27 -0.48 -7.44 16 19 C 0.00 0.06 8.28 72.59 0.60 0.66 16 20 C -0.14 -1.84 7.06 30.77 0.22 -1.62 16 21 C 0.09 3.43 4.68 86.33 0.40 3.83 16 22 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 23 H 0.03 1.43 3.35 -2.39 -0.01 1.42 16 24 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 2.55 5.83 -2.39 -0.01 2.54 16 28 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 30 H 0.12 2.33 7.98 -2.39 -0.02 2.31 16 31 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 2.64 8.01 -2.39 -0.02 2.62 16 Total: -1.00 -71.73 280.87 1.48 -70.25 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 0.98 Total: 4.42 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 3.47 Total: -24.71 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -4.16 Total: -91.02 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.48 Total: -7.44 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.67 Total: 48.50 kcal Total: -71.73 1.48 -70.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647733513.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.921 kcal (2) G-P(sol) polarization free energy of solvation -71.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds