Wall clock time and date at job start Sun Mar 29 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 119.99646 * 2 1 4 4 C 1.50696 * 119.99968 * 0.02562 * 3 2 1 5 5 C 1.47102 * 119.99625 * 180.02562 * 3 2 1 6 6 O 1.21613 * 120.00232 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99517 * 179.97438 * 5 3 2 8 8 C 1.46499 * 119.99665 * 179.72418 * 7 5 3 9 9 H 1.09003 * 110.88938 * 329.15456 * 8 7 5 10 10 C 1.55161 * 111.00561 * 205.28118 * 8 7 5 11 11 C 1.54331 * 102.93879 * 277.42706 * 10 8 7 12 12 N 1.47024 * 107.27011 * 337.80597 * 11 10 8 13 13 C 1.36935 * 125.64661 * 178.98409 * 12 11 10 14 14 H 1.07998 * 120.00339 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99848 * 359.97438 * 13 12 11 16 16 N 1.31617 * 120.00493 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47374 * 89.99984 * 17 15 13 19 19 H 1.48505 * 109.47359 * 210.00174 * 17 15 13 20 20 H 1.48506 * 109.46825 * 329.99887 * 17 15 13 21 21 C 1.47418 * 108.70330 * 358.94023 * 12 11 10 22 22 H 1.08995 * 109.47265 * 299.99440 * 1 2 3 23 23 H 1.09001 * 109.47294 * 59.99823 * 1 2 3 24 24 H 1.09001 * 109.46778 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00493 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.47059 * 269.99762 * 4 3 2 27 27 H 1.08997 * 109.47347 * 29.99513 * 4 3 2 28 28 H 1.08998 * 109.47012 * 150.00237 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 3 30 30 H 1.08996 * 110.72196 * 35.78728 * 10 8 7 31 31 H 1.08994 * 110.72275 * 159.06641 * 10 8 7 32 32 H 1.09001 * 109.88027 * 97.22554 * 11 10 8 33 33 H 1.08999 * 109.88222 * 218.38774 * 11 10 8 34 34 H 0.96995 * 120.00120 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.37044 * 265.28953 * 21 12 11 36 36 H 1.09006 * 110.36755 * 142.96761 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4183 2.4569 0.0006 5 6 3.6429 1.1518 -0.0006 6 8 4.2510 0.0987 -0.0015 7 7 4.3167 2.3191 -0.0011 8 6 5.7817 2.3191 0.0044 9 1 6.1684 1.4462 0.5304 10 6 6.3355 3.6306 0.6217 11 6 6.2823 4.6191 -0.5622 12 7 6.2724 3.8212 -1.7971 13 6 6.2095 4.3216 -3.0701 14 1 6.2081 3.6492 -3.9153 15 6 6.1474 5.6932 -3.2744 16 7 6.1486 6.5128 -2.2445 17 14 6.0623 6.3759 -5.0111 18 1 4.6416 6.5005 -5.4250 19 1 6.7082 7.7126 -5.0498 20 1 6.7696 5.4574 -5.9392 21 6 6.3425 2.3932 -1.4377 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.0471 -0.9353 -0.0004 26 1 1.2363 2.7718 -1.0270 27 1 0.4661 2.3264 0.5147 28 1 2.0076 3.2164 0.5143 29 1 3.8317 3.1592 -0.0007 30 1 5.6987 3.9717 1.4378 31 1 7.3614 3.4929 0.9633 32 1 5.3754 5.2208 -0.5023 33 1 7.1600 5.2652 -0.5454 34 1 6.1056 7.4712 -2.3873 35 1 7.3755 2.0462 -1.4613 36 1 5.7269 1.8009 -2.1148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649447611.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:10 Heat of formation + Delta-G solvation = -3.764964 kcal Electronic energy + Delta-G solvation = -17244.376927 eV Core-core repulsion = 14536.303886 eV Total energy + Delta-G solvation = -2708.073041 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.64624 -37.33829 -35.36050 -33.72335 -31.83058 -29.56975 -28.91749 -27.14894 -26.08716 -24.45688 -21.97277 -20.08661 -19.78010 -18.39914 -17.02546 -16.62725 -15.97780 -14.79667 -14.65409 -14.35380 -13.87979 -13.58917 -13.43422 -13.21920 -12.64571 -12.37399 -12.31373 -12.09494 -11.88944 -11.74489 -11.26682 -10.96364 -10.88233 -10.68938 -10.33885 -10.12750 -9.93934 -9.66977 -9.51435 -9.01427 -8.69434 -8.46703 -6.81393 -5.71792 -3.04177 1.50909 3.39606 3.45261 3.47047 3.52252 3.65645 4.50459 4.87814 4.95372 5.15356 5.25243 5.33700 5.43034 5.47021 5.48597 5.67152 5.72442 5.78530 5.81822 5.86531 5.97786 6.23290 6.39317 6.45749 6.50699 6.55049 6.61130 6.72339 7.10327 7.53868 7.56677 7.79706 7.97265 8.25150 8.60786 9.22494 9.82394 10.48510 11.40248 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.006486 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.754824 B = 4316.042863 C = 4809.607288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.180 4.180 4 C -0.119 4.119 5 C 0.550 3.450 6 O -0.557 6.557 7 N -0.698 5.698 8 C 0.126 3.874 9 H 0.090 0.910 10 C -0.154 4.154 11 C 0.176 3.824 12 N -0.604 5.604 13 C -0.224 4.224 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.924 5.924 17 Si 0.911 3.089 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.125 3.875 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.403 0.597 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.028 0.972 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 -7.592 7.002 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 C -0.183 4.183 4 C -0.176 4.176 5 C 0.338 3.662 6 O -0.438 6.438 7 N -0.348 5.348 8 C 0.021 3.979 9 H 0.108 0.892 10 C -0.193 4.193 11 C 0.051 3.949 12 N -0.331 5.331 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.572 5.572 17 Si 0.742 3.258 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.002 4.002 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.239 0.761 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.755 -8.087 6.891 13.767 hybrid contribution -0.168 0.917 -0.987 1.358 sum -8.924 -7.170 5.905 12.880 Atomic orbital electron populations 1.20951 0.92388 1.02659 1.02447 1.23477 0.95992 0.97914 0.93400 1.21515 0.93080 0.96709 1.07029 1.20840 0.99775 0.94131 1.02863 1.18354 0.87602 0.83884 0.76320 1.90736 1.70154 1.31375 1.51498 1.45799 1.07365 1.08425 1.73225 1.22147 0.79146 0.98573 0.98058 0.89227 1.23230 1.00414 0.96015 0.99638 1.21172 1.01183 0.90670 0.81869 1.44477 1.86963 0.99187 1.02435 1.19065 1.43107 0.90530 0.82498 0.90568 1.24768 1.02444 0.95855 0.97430 1.69949 1.57426 1.02125 1.27732 0.86126 0.77562 0.78323 0.83816 1.21699 1.21693 1.20737 1.21943 0.97235 0.87954 0.93071 0.90895 0.90895 0.91697 0.85782 0.90646 0.91170 0.91596 0.76101 0.91644 0.90944 0.93644 0.93756 0.93825 0.95458 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.91 36.00 0.32 -0.76 16 2 C -0.09 -1.07 9.84 -36.13 -0.36 -1.42 16 3 C -0.18 -2.50 6.00 -102.85 -0.62 -3.11 16 4 C -0.12 -1.35 9.14 36.00 0.33 -1.02 16 5 C 0.55 9.64 7.75 -12.66 -0.10 9.54 16 6 O -0.56 -11.40 15.86 5.27 0.08 -11.31 16 7 N -0.70 -12.20 5.13 -52.90 -0.27 -12.47 16 8 C 0.13 2.36 3.43 -65.78 -0.23 2.13 16 9 H 0.09 1.63 7.54 -51.93 -0.39 1.24 16 10 C -0.15 -2.80 6.55 -24.89 -0.16 -2.96 16 11 C 0.18 4.14 5.36 -3.06 -0.02 4.12 16 12 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 13 C -0.22 -6.26 10.28 -15.06 -0.15 -6.42 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 16 N -0.92 -26.74 10.31 55.49 0.57 -26.17 16 17 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 22 H 0.07 0.54 7.40 -51.93 -0.38 0.16 16 23 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.12 1.62 7.49 -52.49 -0.39 1.23 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.63 6.49 -51.93 -0.34 0.29 16 28 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 29 H 0.40 6.70 6.77 -40.82 -0.28 6.42 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16 33 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 295.61 15.07 4.45 4.45 Total: -1.00 -31.72 295.61 -7.26 -38.98 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.41 Total: 2.87 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.09 Total: 2.47 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.28 Total: -54.59 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.72 -7.26 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649447611.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.219 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds