Wall clock time and date at job start Sun Mar 29 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 119.99646 * 2 1 4 4 C 1.50696 * 119.99968 * 0.02562 * 3 2 1 5 5 C 1.47102 * 119.99625 * 180.02562 * 3 2 1 6 6 O 1.21613 * 120.00232 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99517 * 179.97438 * 5 3 2 8 8 C 1.46499 * 119.99665 * 179.72418 * 7 5 3 9 9 H 1.09003 * 110.88938 * 329.15456 * 8 7 5 10 10 C 1.55161 * 111.00561 * 205.28118 * 8 7 5 11 11 C 1.54331 * 102.93879 * 277.42706 * 10 8 7 12 12 N 1.47024 * 107.27011 * 337.80597 * 11 10 8 13 13 C 1.36935 * 125.64661 * 178.98409 * 12 11 10 14 14 H 1.07998 * 120.00339 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99848 * 359.97438 * 13 12 11 16 16 N 1.31617 * 120.00493 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47374 * 89.99984 * 17 15 13 19 19 H 1.48505 * 109.47359 * 210.00174 * 17 15 13 20 20 H 1.48506 * 109.46825 * 329.99887 * 17 15 13 21 21 C 1.47418 * 108.70330 * 358.94023 * 12 11 10 22 22 H 1.08995 * 109.47265 * 299.99440 * 1 2 3 23 23 H 1.09001 * 109.47294 * 59.99823 * 1 2 3 24 24 H 1.09001 * 109.46778 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00493 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.47059 * 269.99762 * 4 3 2 27 27 H 1.08997 * 109.47347 * 29.99513 * 4 3 2 28 28 H 1.08998 * 109.47012 * 150.00237 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 3 30 30 H 1.08996 * 110.72196 * 35.78728 * 10 8 7 31 31 H 1.08994 * 110.72275 * 159.06641 * 10 8 7 32 32 H 1.09001 * 109.88027 * 97.22554 * 11 10 8 33 33 H 1.08999 * 109.88222 * 218.38774 * 11 10 8 34 34 H 0.96995 * 120.00120 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.37044 * 265.28953 * 21 12 11 36 36 H 1.09006 * 110.36755 * 142.96761 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4183 2.4569 0.0006 5 6 3.6429 1.1518 -0.0006 6 8 4.2510 0.0987 -0.0015 7 7 4.3167 2.3191 -0.0011 8 6 5.7817 2.3191 0.0044 9 1 6.1684 1.4462 0.5304 10 6 6.3355 3.6306 0.6217 11 6 6.2823 4.6191 -0.5622 12 7 6.2724 3.8212 -1.7971 13 6 6.2095 4.3216 -3.0701 14 1 6.2081 3.6492 -3.9153 15 6 6.1474 5.6932 -3.2744 16 7 6.1486 6.5128 -2.2445 17 14 6.0623 6.3759 -5.0111 18 1 4.6416 6.5005 -5.4250 19 1 6.7082 7.7126 -5.0498 20 1 6.7696 5.4574 -5.9392 21 6 6.3425 2.3932 -1.4377 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.0471 -0.9353 -0.0004 26 1 1.2363 2.7718 -1.0270 27 1 0.4661 2.3264 0.5147 28 1 2.0076 3.2164 0.5143 29 1 3.8317 3.1592 -0.0007 30 1 5.6987 3.9717 1.4378 31 1 7.3614 3.4929 0.9633 32 1 5.3754 5.2208 -0.5023 33 1 7.1600 5.2652 -0.5454 34 1 6.1056 7.4712 -2.3873 35 1 7.3755 2.0462 -1.4613 36 1 5.7269 1.8009 -2.1148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649447611.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:10 Heat of formation + Delta-G solvation = -24.587092 kcal Electronic energy + Delta-G solvation = -17245.279842 eV Core-core repulsion = 14536.303886 eV Total energy + Delta-G solvation = -2708.975956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05242 -38.99050 -36.42198 -35.44840 -33.64712 -31.15645 -30.16362 -28.80658 -27.08066 -26.39870 -23.29909 -21.96463 -21.33147 -19.66419 -18.80226 -17.94146 -17.48185 -16.67551 -16.11743 -15.84074 -15.59741 -15.00503 -14.57118 -14.29671 -13.96113 -13.87589 -13.60943 -13.37359 -13.29963 -12.91143 -12.86024 -12.76402 -12.31673 -12.15341 -12.09872 -12.02094 -11.82573 -11.60702 -10.89756 -10.72893 -10.17789 -9.86214 -8.87434 -7.85778 -5.20282 0.42494 1.45674 1.46731 1.55672 2.21393 2.35851 2.48812 3.33063 3.65860 3.71008 3.87218 4.02146 4.06456 4.29395 4.32109 4.48605 4.65896 4.70499 4.75514 4.83005 4.87569 4.90904 4.98444 5.02103 5.07786 5.15954 5.43027 5.50646 5.56085 5.64801 5.72179 5.75369 6.18960 6.61104 7.10979 7.24220 7.75886 8.40581 9.24315 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.006486 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.754824 B = 4316.042863 C = 4809.607288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 C -0.207 4.207 4 C -0.113 4.113 5 C 0.544 3.456 6 O -0.594 6.594 7 N -0.698 5.698 8 C 0.137 3.863 9 H 0.101 0.899 10 C -0.134 4.134 11 C 0.184 3.816 12 N -0.620 5.620 13 C -0.243 4.243 14 H 0.072 0.928 15 C -0.058 4.058 16 N -0.946 5.946 17 Si 0.975 3.025 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.275 1.275 21 C 0.123 3.877 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.407 0.593 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.021 0.979 33 H 0.010 0.990 34 H 0.248 0.752 35 H 0.032 0.968 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -8.052 7.485 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 C -0.210 4.210 4 C -0.170 4.170 5 C 0.335 3.665 6 O -0.477 6.477 7 N -0.347 5.347 8 C 0.031 3.969 9 H 0.119 0.881 10 C -0.172 4.172 11 C 0.059 3.941 12 N -0.347 5.347 13 C -0.372 4.372 14 H 0.090 0.910 15 C -0.252 4.252 16 N -0.595 5.595 17 Si 0.804 3.196 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.004 4.004 22 H 0.110 0.890 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.128 0.872 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.244 0.756 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.292 -8.559 7.384 15.287 hybrid contribution 0.297 0.966 -1.151 1.532 sum -9.995 -7.593 6.233 14.014 Atomic orbital electron populations 1.21042 0.89220 1.04238 1.03657 1.23785 0.98191 0.96683 0.90133 1.21504 0.90956 0.98591 1.09953 1.20831 1.00653 0.92577 1.02894 1.19012 0.89265 0.83105 0.75114 1.90706 1.71281 1.32428 1.53308 1.45802 1.06855 1.08878 1.73204 1.21979 0.80044 0.99167 0.95680 0.88134 1.23090 1.02290 0.93851 0.97998 1.20963 0.98387 0.91329 0.83375 1.44700 1.86812 1.00840 1.02342 1.19351 1.43178 0.90972 0.83747 0.90972 1.25534 1.02448 0.96056 1.01117 1.70143 1.57989 1.01963 1.29414 0.85131 0.77563 0.77334 0.79593 1.21139 1.21796 1.20003 1.22049 0.97392 0.85988 0.94958 0.88994 0.89905 0.90126 0.87207 0.91178 0.88371 0.91923 0.75609 0.88863 0.89046 0.96066 0.97127 0.94252 0.95011 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.91 71.24 0.63 -1.06 16 2 C -0.07 -1.52 9.84 24.52 0.24 -1.28 16 3 C -0.21 -5.46 6.00 -18.70 -0.11 -5.57 16 4 C -0.11 -2.33 9.14 71.23 0.65 -1.68 16 5 C 0.54 18.85 7.75 86.57 0.67 19.52 16 6 O -0.59 -24.32 15.86 -4.07 -0.06 -24.38 16 7 N -0.70 -23.98 5.13 -439.54 -2.26 -26.23 16 8 C 0.14 5.02 3.43 46.38 0.16 5.18 16 9 H 0.10 3.53 7.54 -2.39 -0.02 3.51 16 10 C -0.13 -4.67 6.55 31.79 0.21 -4.46 16 11 C 0.18 8.77 5.36 86.73 0.47 9.23 16 12 N -0.62 -32.06 3.39 -691.98 -2.35 -34.41 16 13 C -0.24 -13.86 10.28 84.03 0.86 -12.99 16 14 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 15 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 16 N -0.95 -55.66 10.31 21.65 0.22 -55.44 16 17 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 C 0.12 5.42 6.93 86.86 0.60 6.02 16 22 H 0.09 0.98 7.40 -2.39 -0.02 0.96 16 23 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.11 2.77 7.49 -2.91 -0.02 2.75 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.10 1.43 6.49 -2.39 -0.02 1.42 16 28 H 0.06 1.31 6.70 -2.39 -0.02 1.30 16 29 H 0.41 13.30 6.77 -92.71 -0.63 12.67 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.02 1.10 7.38 -2.39 -0.02 1.08 16 33 H 0.01 0.57 7.51 -2.39 -0.02 0.55 16 34 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -69.33 295.61 2.87 -66.47 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.44 Total: 16.11 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.85 Total: 10.08 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -4.38 Total: -116.09 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.33 2.87 -66.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649447611.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.878 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds