Wall clock time and date at job start Sun Mar 29 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 H 1.09004 * 109.47283 * 175.74377 * 3 2 1 5 5 C 1.50690 * 109.47479 * 55.73905 * 3 2 1 6 6 H 1.08003 * 120.00497 * 240.00017 * 5 3 2 7 7 C 1.37878 * 120.00075 * 60.00070 * 5 3 2 8 8 N 1.31517 * 119.99868 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47330 * 89.99713 * 9 7 5 11 11 H 1.48500 * 109.47227 * 210.00036 * 9 7 5 12 12 H 1.48503 * 109.47117 * 329.99870 * 9 7 5 13 13 N 1.46904 * 109.47130 * 295.73527 * 3 2 1 14 14 C 1.46895 * 111.00204 * 273.14328 * 13 3 2 15 15 H 1.08995 * 109.47360 * 36.90003 * 14 13 3 16 16 C 1.53009 * 109.46930 * 276.90054 * 14 13 3 17 17 C 1.52999 * 109.47130 * 156.90511 * 14 13 3 18 18 C 1.50700 * 109.47045 * 294.99616 * 17 14 13 19 19 C 1.35446 * 126.77661 * 89.99913 * 18 17 14 20 20 C 1.41379 * 103.98866 * 179.97438 * 19 18 17 21 21 N 1.30181 * 106.39260 * 0.02562 * 20 19 18 22 22 O 1.20922 * 111.60319 * 359.71906 * 21 20 19 23 23 H 1.09000 * 109.47012 * 295.09268 * 1 2 3 24 24 H 1.09007 * 109.46851 * 175.09618 * 1 2 3 25 25 H 1.08996 * 109.47117 * 55.09617 * 1 2 3 26 26 H 1.09005 * 109.47092 * 119.99859 * 2 1 3 27 27 H 1.08998 * 109.46895 * 239.99834 * 2 1 3 28 28 H 0.96996 * 119.99699 * 179.97438 * 8 7 5 29 29 H 1.00899 * 111.00026 * 149.18426 * 13 3 2 30 30 H 1.08996 * 109.46895 * 179.97438 * 16 14 13 31 31 H 1.09001 * 109.46669 * 300.00358 * 16 14 13 32 32 H 1.09002 * 109.46546 * 60.00191 * 16 14 13 33 33 H 1.08994 * 109.47509 * 54.99598 * 17 14 13 34 34 H 1.09003 * 109.47366 * 174.99513 * 17 14 13 35 35 H 1.07999 * 128.00758 * 359.97438 * 19 18 17 36 36 H 1.07996 * 126.81107 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0763 5 6 1.4533 2.1827 1.1742 6 1 0.8416 3.0576 1.0102 7 6 1.6975 1.7432 2.4580 8 7 2.4420 0.6776 2.6578 9 14 0.9698 2.6603 3.9135 10 1 -0.3638 2.0939 4.2390 11 1 1.8679 2.5181 5.0875 12 1 0.8266 4.0983 3.5712 13 7 1.6362 2.1046 -1.2476 14 6 2.6205 1.8676 -2.3119 15 1 3.0110 0.8536 -2.2265 16 6 3.7691 2.8694 -2.1767 17 6 1.9492 2.0425 -3.6756 18 6 0.8995 0.9769 -3.8591 19 6 -0.4066 1.0566 -3.5092 20 6 -0.9406 -0.1944 -3.8949 21 7 0.0443 -0.8706 -4.4119 22 8 1.0728 -0.2347 -4.4054 23 1 -0.3633 0.4358 0.9307 24 1 -0.3633 -1.0240 -0.0879 25 1 -0.3633 0.5880 -0.8428 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.6140 0.3686 3.5610 29 1 1.4915 3.0926 -1.1023 30 1 4.4997 2.6932 -2.9661 31 1 3.3785 3.8835 -2.2621 32 1 4.2472 2.7448 -1.2051 33 1 1.4818 3.0257 -3.7271 34 1 2.6978 1.9544 -4.4631 35 1 -0.9210 1.8841 -3.0435 36 1 -1.9628 -0.5241 -3.7821 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652111188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:35 Heat of formation + Delta-G solvation = 47.984585 kcal Electronic energy + Delta-G solvation = -17748.508723 eV Core-core repulsion = 15042.679711 eV Total energy + Delta-G solvation = -2705.829012 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.44661 -37.33931 -34.32269 -33.35725 -31.92436 -30.98882 -28.76849 -26.65358 -25.73774 -23.27072 -22.95365 -21.39269 -20.46868 -18.86694 -17.06663 -17.00927 -16.21592 -15.15515 -14.76632 -14.28893 -13.74619 -13.68466 -13.10737 -12.98249 -12.62830 -12.24893 -12.10386 -11.81578 -11.60562 -11.26643 -10.98108 -10.90816 -10.66387 -10.58756 -10.29639 -10.02892 -10.01402 -9.73885 -9.35682 -8.78787 -8.76376 -8.48190 -7.24785 -6.02601 -4.07646 1.95233 2.76315 3.27832 3.35134 3.36784 3.53403 4.38684 4.77521 4.94097 5.09415 5.29505 5.35251 5.53234 5.62919 5.74224 5.82346 5.91682 6.02947 6.13754 6.25351 6.44435 6.50665 6.55366 6.60954 6.73750 6.89288 7.27237 7.34121 7.52064 7.74589 7.79696 7.85268 8.24987 8.37803 8.65301 8.67412 9.01839 9.56962 11.03473 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.007501 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.040268 B = 3732.164025 C = 4193.818992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.084 3.916 15 H 0.075 0.925 16 C -0.177 4.177 17 C -0.028 4.028 18 C -0.005 4.005 19 C -0.210 4.210 20 C -0.014 4.014 21 N -0.380 5.380 22 O 0.085 5.915 23 H 0.051 0.949 24 H 0.007 0.993 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.006 0.994 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 3.217 -10.845 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.136 4.136 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.308 5.308 14 C -0.027 4.027 15 H 0.093 0.907 16 C -0.236 4.236 17 C -0.067 4.067 18 C -0.068 4.068 19 C -0.231 4.231 20 C -0.192 4.192 21 N -0.085 5.085 22 O 0.020 5.980 23 H 0.070 0.930 24 H 0.026 0.974 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.972 1.344 -11.410 11.657 hybrid contribution -0.096 1.612 1.740 2.374 sum -2.069 2.956 -9.670 10.321 Atomic orbital electron populations 1.21437 0.97552 0.96912 1.01523 1.21381 0.95125 0.98270 0.98862 1.19085 0.93662 0.91517 0.84582 0.98012 1.21164 1.31510 1.11909 0.90462 0.92397 1.24876 0.95147 0.95016 0.98764 1.69897 1.38063 1.23467 1.21217 0.86616 0.79020 0.80133 0.82327 1.20727 1.21377 1.20018 1.60783 1.44532 1.16644 1.08850 1.21501 0.90916 0.99325 0.91006 0.90663 1.22470 0.99245 0.99579 1.02299 1.20268 0.94325 0.93600 0.98478 1.24296 0.96902 0.87811 0.97802 1.22359 0.94053 1.00090 1.06615 1.24943 1.00408 0.92927 1.00947 1.73806 0.93584 1.19785 1.21317 1.84730 1.29840 1.22839 1.60580 0.93029 0.97354 0.93216 0.90052 0.97517 0.93007 0.85173 0.93095 0.92770 0.91776 0.88991 0.90251 0.81514 0.80109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.44 37.16 0.35 -2.30 16 2 C -0.10 -2.36 5.55 -26.73 -0.15 -2.51 16 3 C 0.22 5.15 2.10 -68.87 -0.14 5.00 16 4 H 0.00 0.06 6.97 -51.93 -0.36 -0.30 16 5 C -0.51 -13.15 7.22 -34.44 -0.25 -13.40 16 6 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.79 11.36 55.43 0.63 -24.16 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.68 -12.70 5.05 -100.96 -0.51 -13.21 16 14 C 0.08 1.33 2.39 -67.71 -0.16 1.17 16 15 H 0.08 1.36 7.24 -51.93 -0.38 0.99 16 16 C -0.18 -2.50 9.15 37.16 0.34 -2.16 16 17 C -0.03 -0.36 5.46 -27.88 -0.15 -0.51 16 18 C 0.00 -0.07 6.48 -35.30 -0.23 -0.30 16 19 C -0.21 -3.11 10.19 -39.38 -0.40 -3.51 16 20 C -0.01 -0.21 12.17 -17.06 -0.21 -0.42 16 21 N -0.38 -6.50 12.07 30.36 0.37 -6.14 16 22 O 0.08 1.42 11.20 17.18 0.19 1.62 16 23 H 0.05 1.26 7.29 -51.93 -0.38 0.88 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.05 1.06 6.74 -51.93 -0.35 0.71 16 26 H 0.08 2.21 6.19 -51.93 -0.32 1.88 16 27 H 0.01 0.15 7.50 -51.93 -0.39 -0.24 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.33 6.06 7.95 -39.29 -0.31 5.74 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.06 1.06 7.31 -51.93 -0.38 0.69 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -28.17 295.91 -6.34 -34.52 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.36 Total: 4.46 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.10 Total: -17.34 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.49 Total: -43.50 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.19 Total: 1.62 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.17 -6.34 -34.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.502 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds