Wall clock time and date at job start Sun Mar 29 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 H 1.09004 * 109.47283 * 175.74377 * 3 2 1 5 5 C 1.50690 * 109.47479 * 55.73905 * 3 2 1 6 6 H 1.08003 * 120.00497 * 240.00017 * 5 3 2 7 7 C 1.37878 * 120.00075 * 60.00070 * 5 3 2 8 8 N 1.31517 * 119.99868 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47330 * 89.99713 * 9 7 5 11 11 H 1.48500 * 109.47227 * 210.00036 * 9 7 5 12 12 H 1.48503 * 109.47117 * 329.99870 * 9 7 5 13 13 N 1.46904 * 109.47130 * 295.73527 * 3 2 1 14 14 C 1.46895 * 111.00204 * 273.14328 * 13 3 2 15 15 H 1.08995 * 109.47360 * 36.90003 * 14 13 3 16 16 C 1.53009 * 109.46930 * 276.90054 * 14 13 3 17 17 C 1.52999 * 109.47130 * 156.90511 * 14 13 3 18 18 C 1.50700 * 109.47045 * 294.99616 * 17 14 13 19 19 C 1.35446 * 126.77661 * 89.99913 * 18 17 14 20 20 C 1.41379 * 103.98866 * 179.97438 * 19 18 17 21 21 N 1.30181 * 106.39260 * 0.02562 * 20 19 18 22 22 O 1.20922 * 111.60319 * 359.71906 * 21 20 19 23 23 H 1.09000 * 109.47012 * 295.09268 * 1 2 3 24 24 H 1.09007 * 109.46851 * 175.09618 * 1 2 3 25 25 H 1.08996 * 109.47117 * 55.09617 * 1 2 3 26 26 H 1.09005 * 109.47092 * 119.99859 * 2 1 3 27 27 H 1.08998 * 109.46895 * 239.99834 * 2 1 3 28 28 H 0.96996 * 119.99699 * 179.97438 * 8 7 5 29 29 H 1.00899 * 111.00026 * 149.18426 * 13 3 2 30 30 H 1.08996 * 109.46895 * 179.97438 * 16 14 13 31 31 H 1.09001 * 109.46669 * 300.00358 * 16 14 13 32 32 H 1.09002 * 109.46546 * 60.00191 * 16 14 13 33 33 H 1.08994 * 109.47509 * 54.99598 * 17 14 13 34 34 H 1.09003 * 109.47366 * 174.99513 * 17 14 13 35 35 H 1.07999 * 128.00758 * 359.97438 * 19 18 17 36 36 H 1.07996 * 126.81107 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0763 5 6 1.4533 2.1827 1.1742 6 1 0.8416 3.0576 1.0102 7 6 1.6975 1.7432 2.4580 8 7 2.4420 0.6776 2.6578 9 14 0.9698 2.6603 3.9135 10 1 -0.3638 2.0939 4.2390 11 1 1.8679 2.5181 5.0875 12 1 0.8266 4.0983 3.5712 13 7 1.6362 2.1046 -1.2476 14 6 2.6205 1.8676 -2.3119 15 1 3.0110 0.8536 -2.2265 16 6 3.7691 2.8694 -2.1767 17 6 1.9492 2.0425 -3.6756 18 6 0.8995 0.9769 -3.8591 19 6 -0.4066 1.0566 -3.5092 20 6 -0.9406 -0.1944 -3.8949 21 7 0.0443 -0.8706 -4.4119 22 8 1.0728 -0.2347 -4.4054 23 1 -0.3633 0.4358 0.9307 24 1 -0.3633 -1.0240 -0.0879 25 1 -0.3633 0.5880 -0.8428 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.6140 0.3686 3.5610 29 1 1.4915 3.0926 -1.1023 30 1 4.4997 2.6932 -2.9661 31 1 3.3785 3.8835 -2.2621 32 1 4.2472 2.7448 -1.2051 33 1 1.4818 3.0257 -3.7271 34 1 2.6978 1.9544 -4.4631 35 1 -0.9210 1.8841 -3.0435 36 1 -1.9628 -0.5241 -3.7821 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652111188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:35 Heat of formation + Delta-G solvation = 31.184523 kcal Electronic energy + Delta-G solvation = -17749.237228 eV Core-core repulsion = 15042.679711 eV Total energy + Delta-G solvation = -2706.557517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.63814 -38.85812 -35.97548 -34.55422 -33.54610 -32.63203 -30.34242 -27.78850 -27.62428 -25.13531 -24.17581 -22.70063 -21.80660 -20.61412 -18.49768 -18.28007 -17.83901 -16.95578 -15.99408 -15.90533 -15.30367 -15.27444 -14.53982 -14.18847 -14.10902 -13.81167 -13.59686 -13.36493 -13.13583 -12.81423 -12.48211 -12.46172 -12.35857 -12.12979 -11.83782 -11.70276 -11.55155 -11.34547 -11.14842 -10.74548 -10.51352 -9.97957 -8.85780 -8.06056 -6.16846 0.77053 1.42698 1.44899 1.52896 1.61361 2.41316 2.44785 3.23846 3.68168 3.71369 3.85041 4.16713 4.36135 4.47650 4.49798 4.65103 4.72181 4.81041 4.82436 4.93151 4.96649 5.01563 5.12799 5.20033 5.33737 5.37490 5.43350 5.51573 5.60777 5.75808 5.84111 5.94138 6.30382 6.57994 6.89412 7.16131 7.49023 7.52126 8.99299 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.007501 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.040268 B = 3732.164025 C = 4193.818992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.091 4.091 3 C 0.230 3.770 4 H -0.033 1.033 5 C -0.515 4.515 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.669 5.669 14 C 0.084 3.916 15 H 0.046 0.954 16 C -0.169 4.169 17 C -0.019 4.019 18 C -0.012 4.012 19 C -0.215 4.215 20 C -0.014 4.014 21 N -0.408 5.408 22 O 0.067 5.933 23 H 0.031 0.969 24 H 0.016 0.984 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.004 0.996 28 H 0.257 0.743 29 H 0.337 0.663 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.181 0.819 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 4.848 -11.851 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.130 4.130 3 C 0.121 3.879 4 H -0.016 1.016 5 C -0.554 4.554 6 H 0.080 0.920 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.300 5.300 14 C -0.027 4.027 15 H 0.064 0.936 16 C -0.228 4.228 17 C -0.057 4.057 18 C -0.075 4.075 19 C -0.237 4.237 20 C -0.192 4.192 21 N -0.116 5.116 22 O 0.005 5.995 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.155 0.845 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.199 0.801 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.928 3.001 -12.440 13.127 hybrid contribution 0.220 1.093 2.006 2.295 sum -2.708 4.094 -10.434 11.531 Atomic orbital electron populations 1.21284 0.96072 0.97588 1.01035 1.21240 0.96251 0.98436 0.97075 1.18763 0.91322 0.91440 0.86380 1.01553 1.21478 1.30860 1.11844 0.91174 0.91956 1.25613 0.95637 0.95738 1.01390 1.70046 1.39524 1.24964 1.21420 0.85685 0.77979 0.79486 0.79241 1.20692 1.21679 1.18847 1.60659 1.45448 1.16663 1.07232 1.21513 0.91225 0.98313 0.91625 0.93575 1.22360 0.98984 1.00012 1.01398 1.20306 0.94540 0.94031 0.96844 1.24759 0.97732 0.87654 0.97358 1.22629 0.94098 1.00411 1.06549 1.25465 1.01228 0.92854 0.99680 1.73804 0.94201 1.20788 1.22843 1.84699 1.30026 1.23549 1.61229 0.94942 0.96479 0.91642 0.93397 0.97701 0.93340 0.84521 0.90483 0.90787 0.95035 0.86431 0.87553 0.80131 0.77585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.58 9.44 71.98 0.68 -3.90 16 2 C -0.09 -4.48 5.55 30.59 0.17 -4.31 16 3 C 0.23 10.88 2.10 44.16 0.09 10.97 16 4 H -0.03 -1.78 6.97 -2.39 -0.02 -1.80 16 5 C -0.51 -26.34 7.22 25.60 0.18 -26.16 16 6 H 0.06 3.08 7.59 -2.91 -0.02 3.06 16 7 C 0.02 0.80 5.30 84.65 0.45 1.25 16 8 N -0.92 -52.50 11.36 21.45 0.24 -52.26 16 9 Si 0.95 42.56 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 N -0.67 -24.24 5.05 -473.32 -2.39 -26.63 16 14 C 0.08 2.54 2.39 44.92 0.11 2.65 16 15 H 0.05 1.67 7.24 -2.39 -0.02 1.65 16 16 C -0.17 -4.46 9.15 71.99 0.66 -3.80 16 17 C -0.02 -0.42 5.46 29.85 0.16 -0.26 16 18 C -0.01 -0.33 6.48 25.04 0.16 -0.16 16 19 C -0.22 -5.86 10.19 22.40 0.23 -5.64 16 20 C -0.01 -0.41 12.17 85.71 1.04 0.63 16 21 N -0.41 -13.55 12.07 -59.25 -0.72 -14.27 16 22 O 0.07 2.17 11.20 71.64 0.80 2.97 16 23 H 0.03 1.55 7.29 -2.39 -0.02 1.53 16 24 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.06 2.68 6.74 -2.39 -0.02 2.66 16 26 H 0.05 2.68 6.19 -2.38 -0.01 2.66 16 27 H 0.00 0.21 7.50 -2.39 -0.02 0.19 16 28 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.34 11.62 7.95 -89.69 -0.71 10.90 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.03 1.03 7.31 -2.39 -0.02 1.01 16 33 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.21 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -61.38 295.91 4.26 -57.12 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.35 Total: 17.20 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.94 Total: -28.72 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -2.86 Total: -93.16 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.80 Total: 2.97 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.38 4.26 -57.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.302 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds