Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46608 * 2 1 4 4 H 1.08999 * 109.47287 * 55.09741 * 3 2 1 5 5 C 1.50701 * 109.46548 * 175.09631 * 3 2 1 6 6 H 1.08001 * 119.99861 * 120.00610 * 5 3 2 7 7 C 1.37878 * 120.00170 * 299.99829 * 5 3 2 8 8 N 1.31513 * 120.00350 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99874 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47144 * 90.00164 * 9 7 5 11 11 H 1.48502 * 109.46873 * 209.99751 * 9 7 5 12 12 H 1.48503 * 109.47011 * 329.99668 * 9 7 5 13 13 N 1.46899 * 109.47121 * 295.09382 * 3 2 1 14 14 C 1.46904 * 110.99617 * 153.92456 * 13 3 2 15 15 H 1.09005 * 109.47080 * 34.76490 * 14 13 3 16 16 C 1.52995 * 109.47031 * 274.76696 * 14 13 3 17 17 C 1.53000 * 109.46931 * 154.76882 * 14 13 3 18 18 C 1.50701 * 109.46852 * 294.99861 * 17 14 13 19 19 C 1.35451 * 126.77611 * 89.71586 * 18 17 14 20 20 C 1.41388 * 103.98177 * 179.90785 * 19 18 17 21 21 N 1.30169 * 106.39611 * 0.35442 * 20 19 18 22 22 O 1.20918 * 111.60947 * 359.77003 * 21 20 19 23 23 H 1.08994 * 109.46951 * 176.21577 * 1 2 3 24 24 H 1.08998 * 109.47769 * 56.20948 * 1 2 3 25 25 H 1.09003 * 109.47109 * 296.20926 * 1 2 3 26 26 H 1.08993 * 109.47153 * 119.99860 * 2 1 3 27 27 H 1.08995 * 109.46811 * 240.00607 * 2 1 3 28 28 H 0.96999 * 120.00756 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99898 * 277.87690 * 13 3 2 30 30 H 1.09003 * 109.47257 * 305.04283 * 16 14 13 31 31 H 1.08999 * 109.47338 * 65.04243 * 16 14 13 32 32 H 1.09004 * 109.47313 * 185.04452 * 16 14 13 33 33 H 1.08995 * 109.47457 * 54.99577 * 17 14 13 34 34 H 1.09003 * 109.47100 * 175.00190 * 17 14 13 35 35 H 1.07996 * 128.00798 * 359.97438 * 19 18 17 36 36 H 1.07998 * 126.79864 * 180.16341 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9812 0.8428 5 6 3.5420 1.4443 0.1215 6 1 4.1461 1.8894 -0.6554 7 6 4.1452 0.8778 1.2243 8 7 5.4560 0.8798 1.3306 9 14 3.1004 0.1075 2.5677 10 1 2.8791 -1.3284 2.2605 11 1 3.7998 0.2327 3.8717 12 1 1.7918 0.8060 2.6387 13 7 1.6493 2.1000 -1.2543 14 6 1.5458 3.5546 -1.0761 15 1 2.3026 3.8884 -0.3661 16 6 0.1556 3.9053 -0.5422 17 6 1.7661 4.2500 -2.4210 18 6 3.1778 4.0049 -2.8880 19 6 3.6119 2.9739 -3.6517 20 6 4.9969 3.2170 -3.7987 21 7 5.2504 4.3091 -3.1372 22 8 4.2528 4.7611 -2.6248 23 1 -0.3633 -1.0254 -0.0678 24 1 -0.3634 0.5715 -0.8540 25 1 -0.3633 0.4539 0.9220 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 5.8804 0.4809 2.1063 29 1 2.2921 1.8716 -1.9977 30 1 -0.6036 3.4932 -1.2070 31 1 0.0325 3.4838 0.4554 32 1 0.0474 4.9890 -0.4948 33 1 1.0662 3.8511 -3.1553 34 1 1.6019 5.3215 -2.3072 35 1 3.0337 2.1561 -4.0558 36 1 5.7048 2.6142 -4.3480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652111191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 53.359432 kcal Electronic energy + Delta-G solvation = -17774.402902 eV Core-core repulsion = 15068.806961 eV Total energy + Delta-G solvation = -2705.595941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.48810 -37.47705 -34.47588 -33.35724 -32.01234 -31.37988 -29.36981 -26.73436 -26.39239 -23.10629 -22.56910 -21.31901 -20.16908 -19.67296 -17.25186 -16.93398 -16.76562 -15.27390 -14.95074 -14.83902 -14.02453 -13.60043 -13.06503 -13.01234 -12.67659 -12.47768 -12.38409 -11.89960 -11.60666 -11.43478 -11.30173 -10.97959 -10.83988 -10.68286 -10.57604 -10.19321 -10.02428 -9.75027 -9.47536 -9.18869 -8.90749 -8.56999 -7.41722 -6.11290 -4.12657 1.88851 2.70505 3.25140 3.35630 3.37892 3.49092 4.36868 4.76169 4.82970 5.02673 5.22357 5.27973 5.46231 5.50480 5.67839 5.88472 5.99099 6.01361 6.03765 6.04965 6.08178 6.19219 6.31943 6.41507 6.51891 6.67362 6.69629 6.73043 6.97869 7.10265 7.26511 7.56778 8.00588 8.35970 8.48513 8.66193 8.91343 9.51543 11.01598 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.009807 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.211131 B = 2854.494206 C = 3619.487956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.070 0.930 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.678 5.678 14 C 0.085 3.915 15 H 0.057 0.943 16 C -0.134 4.134 17 C -0.041 4.041 18 C -0.021 4.021 19 C -0.231 4.231 20 C -0.008 4.008 21 N -0.368 5.368 22 O 0.097 5.903 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.335 0.665 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 4.194 -7.724 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.088 0.912 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.310 5.310 14 C -0.026 4.026 15 H 0.075 0.925 16 C -0.192 4.192 17 C -0.080 4.080 18 C -0.085 4.085 19 C -0.253 4.253 20 C -0.186 4.186 21 N -0.072 5.072 22 O 0.031 5.969 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.187 0.813 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.621 4.761 -7.291 12.253 hybrid contribution 0.272 -1.139 0.633 1.331 sum -8.349 3.622 -6.658 11.276 Atomic orbital electron populations 1.21740 0.97555 0.99432 1.01342 1.21810 0.93842 0.99405 1.00294 1.19590 0.94207 0.90562 0.88180 0.94922 1.21703 0.90458 1.38964 1.07134 0.91185 1.25010 0.94723 0.95350 0.97900 1.69925 1.08823 1.44898 1.29750 0.86829 0.80588 0.79839 0.80802 1.20526 1.22674 1.18943 1.60932 1.54940 1.05727 1.09379 1.21405 0.97378 0.89997 0.93783 0.92530 1.21766 0.96412 0.99610 1.01459 1.20462 0.86163 1.02408 0.98934 1.24516 0.92206 0.93113 0.98660 1.22497 0.95089 1.01824 1.05852 1.24941 0.96327 0.95857 1.01486 1.73815 1.07837 1.14037 1.11466 1.84776 1.11945 1.44371 1.55840 0.94909 0.91689 0.94342 0.93811 0.92565 0.92687 0.84609 0.92312 0.92528 0.93208 0.88236 0.89469 0.81257 0.79735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.84 37.16 0.37 -2.18 16 2 C -0.12 -2.47 5.11 -26.73 -0.14 -2.61 16 3 C 0.18 4.16 1.38 -68.86 -0.09 4.07 16 4 H 0.03 0.78 6.23 -51.93 -0.32 0.46 16 5 C -0.54 -14.92 8.90 -34.44 -0.31 -15.23 16 6 H 0.07 2.13 7.97 -52.49 -0.42 1.71 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.89 22.06 24.41 -169.99 -4.15 17.91 16 10 H -0.28 -6.75 6.83 56.52 0.39 -6.37 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.68 -12.70 5.44 -100.95 -0.55 -13.24 16 14 C 0.09 1.41 2.44 -67.71 -0.17 1.24 16 15 H 0.06 1.13 7.67 -51.93 -0.40 0.74 16 16 C -0.13 -1.87 9.38 37.16 0.35 -1.53 16 17 C -0.04 -0.55 5.38 -27.88 -0.15 -0.70 16 18 C -0.02 -0.34 6.33 -35.30 -0.22 -0.56 16 19 C -0.23 -3.57 9.55 -39.38 -0.38 -3.95 16 20 C -0.01 -0.13 12.17 -17.06 -0.21 -0.33 16 21 N -0.37 -7.03 12.07 30.35 0.37 -6.67 16 22 O 0.10 1.79 11.20 17.16 0.19 1.98 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.09 7.65 -51.93 -0.40 0.69 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 1.01 3.21 -51.93 -0.17 0.84 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.34 6.38 5.68 -39.29 -0.22 6.15 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.87 7.52 -51.93 -0.39 0.48 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.17 2.20 7.89 -52.49 -0.41 1.79 16 36 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 290.67 15.07 4.38 4.38 Total: -1.00 -31.22 290.67 -5.33 -36.55 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.30 Total: 5.72 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -1.04 Total: -19.77 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.59 Total: -46.77 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.19 Total: 1.98 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.22 -5.33 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.907 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds