Wall clock time and date at job start Sun Mar 29 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46608 * 2 1 4 4 H 1.08999 * 109.47287 * 55.09741 * 3 2 1 5 5 C 1.50701 * 109.46548 * 175.09631 * 3 2 1 6 6 H 1.08001 * 119.99861 * 120.00610 * 5 3 2 7 7 C 1.37878 * 120.00170 * 299.99829 * 5 3 2 8 8 N 1.31513 * 120.00350 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99874 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47144 * 90.00164 * 9 7 5 11 11 H 1.48502 * 109.46873 * 209.99751 * 9 7 5 12 12 H 1.48503 * 109.47011 * 329.99668 * 9 7 5 13 13 N 1.46899 * 109.47121 * 295.09382 * 3 2 1 14 14 C 1.46904 * 110.99617 * 153.92456 * 13 3 2 15 15 H 1.09005 * 109.47080 * 34.76490 * 14 13 3 16 16 C 1.52995 * 109.47031 * 274.76696 * 14 13 3 17 17 C 1.53000 * 109.46931 * 154.76882 * 14 13 3 18 18 C 1.50701 * 109.46852 * 294.99861 * 17 14 13 19 19 C 1.35451 * 126.77611 * 89.71586 * 18 17 14 20 20 C 1.41388 * 103.98177 * 179.90785 * 19 18 17 21 21 N 1.30169 * 106.39611 * 0.35442 * 20 19 18 22 22 O 1.20918 * 111.60947 * 359.77003 * 21 20 19 23 23 H 1.08994 * 109.46951 * 176.21577 * 1 2 3 24 24 H 1.08998 * 109.47769 * 56.20948 * 1 2 3 25 25 H 1.09003 * 109.47109 * 296.20926 * 1 2 3 26 26 H 1.08993 * 109.47153 * 119.99860 * 2 1 3 27 27 H 1.08995 * 109.46811 * 240.00607 * 2 1 3 28 28 H 0.96999 * 120.00756 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99898 * 277.87690 * 13 3 2 30 30 H 1.09003 * 109.47257 * 305.04283 * 16 14 13 31 31 H 1.08999 * 109.47338 * 65.04243 * 16 14 13 32 32 H 1.09004 * 109.47313 * 185.04452 * 16 14 13 33 33 H 1.08995 * 109.47457 * 54.99577 * 17 14 13 34 34 H 1.09003 * 109.47100 * 175.00190 * 17 14 13 35 35 H 1.07996 * 128.00798 * 359.97438 * 19 18 17 36 36 H 1.07998 * 126.79864 * 180.16341 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9812 0.8428 5 6 3.5420 1.4443 0.1215 6 1 4.1461 1.8894 -0.6554 7 6 4.1452 0.8778 1.2243 8 7 5.4560 0.8798 1.3306 9 14 3.1004 0.1075 2.5677 10 1 2.8791 -1.3284 2.2605 11 1 3.7998 0.2327 3.8717 12 1 1.7918 0.8060 2.6387 13 7 1.6493 2.1000 -1.2543 14 6 1.5458 3.5546 -1.0761 15 1 2.3026 3.8884 -0.3661 16 6 0.1556 3.9053 -0.5422 17 6 1.7661 4.2500 -2.4210 18 6 3.1778 4.0049 -2.8880 19 6 3.6119 2.9739 -3.6517 20 6 4.9969 3.2170 -3.7987 21 7 5.2504 4.3091 -3.1372 22 8 4.2528 4.7611 -2.6248 23 1 -0.3633 -1.0254 -0.0678 24 1 -0.3634 0.5715 -0.8540 25 1 -0.3633 0.4539 0.9220 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 5.8804 0.4809 2.1063 29 1 2.2921 1.8716 -1.9977 30 1 -0.6036 3.4932 -1.2070 31 1 0.0325 3.4838 0.4554 32 1 0.0474 4.9890 -0.4948 33 1 1.0662 3.8511 -3.1553 34 1 1.6019 5.3215 -2.3072 35 1 3.0337 2.1561 -4.0558 36 1 5.7048 2.6142 -4.3480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652111191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:41 Heat of formation + Delta-G solvation = 31.679559 kcal Electronic energy + Delta-G solvation = -17775.343012 eV Core-core repulsion = 15068.806961 eV Total energy + Delta-G solvation = -2706.536051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.82408 -38.98831 -36.04746 -34.69147 -34.05557 -32.75512 -30.82578 -28.28329 -27.87093 -24.47307 -24.30664 -22.65127 -21.67325 -21.21568 -19.11925 -18.42934 -18.16645 -17.08419 -16.48231 -16.17869 -15.48387 -15.25794 -14.75661 -14.33323 -14.18196 -14.06229 -13.64869 -13.50335 -13.16795 -12.87368 -12.63655 -12.43621 -12.34195 -12.15478 -12.06066 -11.85473 -11.50039 -11.37045 -11.27669 -11.11088 -10.70023 -10.20394 -9.06820 -8.33662 -6.38380 0.58903 1.27377 1.32207 1.41874 1.42885 2.27572 2.28181 3.02269 3.52276 3.53822 3.71419 4.06546 4.21808 4.32168 4.43349 4.50528 4.51609 4.66901 4.70551 4.83207 4.92898 4.95977 4.97562 5.11428 5.18154 5.22553 5.26986 5.34785 5.50523 5.54472 5.58345 5.69301 6.10048 6.42328 6.66540 6.83983 7.30606 7.34215 8.82895 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.009807 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.211131 B = 2854.494206 C = 3619.487956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.191 3.809 4 H 0.025 0.975 5 C -0.537 4.537 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.950 5.950 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.305 1.305 12 H -0.244 1.244 13 N -0.662 5.662 14 C 0.081 3.919 15 H 0.011 0.989 16 C -0.127 4.127 17 C -0.033 4.033 18 C -0.029 4.029 19 C -0.234 4.234 20 C -0.015 4.015 21 N -0.406 5.406 22 O 0.072 5.928 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.196 0.804 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 3.748 -8.307 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.081 3.919 4 H 0.043 0.957 5 C -0.576 4.576 6 H 0.044 0.956 7 C -0.186 4.186 8 N -0.591 5.591 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.233 1.233 12 H -0.168 1.168 13 N -0.293 5.293 14 C -0.030 4.030 15 H 0.029 0.971 16 C -0.185 4.185 17 C -0.071 4.071 18 C -0.093 4.093 19 C -0.255 4.255 20 C -0.193 4.193 21 N -0.113 5.113 22 O 0.010 5.990 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.132 0.868 35 H 0.213 0.787 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.959 4.334 -7.885 14.966 hybrid contribution 1.353 -0.951 0.722 1.804 sum -10.607 3.383 -7.164 13.239 Atomic orbital electron populations 1.21649 0.94153 1.01219 1.02076 1.21745 0.96830 0.97539 0.99409 1.19424 0.90600 0.92155 0.89770 0.95691 1.22052 0.93072 1.37000 1.05450 0.95576 1.25898 0.95723 0.96322 1.00677 1.70092 1.11001 1.47117 1.30864 0.85810 0.79495 0.79628 0.77190 1.19214 1.23297 1.16775 1.60990 1.53829 1.07115 1.07379 1.21522 0.97948 0.88656 0.94824 0.97101 1.21714 0.94656 1.01464 1.00636 1.20595 0.84902 1.03959 0.97655 1.25161 0.92812 0.92968 0.98341 1.22896 0.94737 1.02240 1.05604 1.25539 0.97705 0.95351 1.00747 1.73798 1.08759 1.15643 1.13086 1.84719 1.12580 1.45303 1.56448 0.92717 0.90423 0.94059 0.95407 0.92843 0.92820 0.84900 0.90263 0.94254 0.90580 0.84970 0.86843 0.78670 0.77355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.84 71.98 0.71 -3.49 16 2 C -0.12 -4.74 5.11 30.60 0.16 -4.58 16 3 C 0.19 8.44 1.38 44.17 0.06 8.50 16 4 H 0.03 1.17 6.23 -2.39 -0.01 1.15 16 5 C -0.54 -30.13 8.90 25.60 0.23 -29.90 16 6 H 0.03 1.66 7.97 -2.91 -0.02 1.63 16 7 C 0.01 0.66 5.45 84.66 0.46 1.13 16 8 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 9 Si 0.95 45.65 24.41 68.60 1.67 47.33 16 10 H -0.27 -12.16 6.83 99.48 0.68 -11.48 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.24 -10.77 6.53 99.48 0.65 -10.12 16 13 N -0.66 -23.65 5.44 -473.29 -2.58 -26.23 16 14 C 0.08 2.54 2.44 44.91 0.11 2.65 16 15 H 0.01 0.44 7.67 -2.38 -0.02 0.42 16 16 C -0.13 -3.11 9.38 71.98 0.67 -2.44 16 17 C -0.03 -0.79 5.38 29.85 0.16 -0.63 16 18 C -0.03 -0.91 6.33 25.04 0.16 -0.76 16 19 C -0.23 -7.02 9.55 22.40 0.21 -6.81 16 20 C -0.02 -0.52 12.17 85.71 1.04 0.52 16 21 N -0.41 -16.01 12.07 -59.27 -0.72 -16.73 16 22 O 0.07 2.75 11.20 71.57 0.80 3.55 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 2.24 7.65 -2.39 -0.02 2.22 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.03 1.21 3.21 -2.39 -0.01 1.20 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.33 12.23 5.68 -89.69 -0.51 11.72 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.10 7.52 -2.39 -0.02 1.08 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.20 4.65 7.89 -2.91 -0.02 4.62 16 36 H 0.21 5.57 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -70.85 290.67 3.93 -66.91 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.47 Total: 21.45 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 3.98 Total: -35.80 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -2.99 Total: -103.45 kcal Atomic # 8 Polarization: 2.75 SS G_CDS: 0.80 Total: 3.55 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.33 kcal Total: -70.85 3.93 -66.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.595 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds