Wall clock time and date at job start Sun Mar 29 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48500 * 109.46983 * 270.00094 * 3 2 1 5 5 H 1.48494 * 109.47355 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.47050 * 150.00572 * 3 2 1 7 7 C 1.38813 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49433 * 359.97438 * 9 7 2 11 11 C 1.53947 * 86.11800 * 204.64345 * 10 9 7 12 12 C 1.47584 * 134.49069 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.76763 * 269.65820 * 12 9 7 14 14 C 1.52997 * 113.76977 * 41.05686 * 12 9 7 15 15 N 1.46505 * 109.47296 * 281.49383 * 14 12 9 16 16 C 1.34770 * 120.00116 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99984 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47164 * 179.97438 * 18 16 15 20 20 C 1.53005 * 117.50154 * 243.74551 * 19 18 16 21 21 C 1.53004 * 117.49838 * 175.08868 * 19 18 16 22 22 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 23 23 H 1.09003 * 113.77250 * 90.33928 * 10 9 7 24 24 H 1.08995 * 113.76824 * 318.94287 * 10 9 7 25 25 H 1.08997 * 113.74250 * 222.05166 * 11 10 9 26 26 H 1.08993 * 113.84054 * 90.74934 * 11 10 9 27 27 H 1.09001 * 109.47378 * 41.49154 * 14 12 9 28 28 H 1.08995 * 109.47542 * 161.49544 * 14 12 9 29 29 H 0.96998 * 119.99703 * 359.97438 * 15 14 12 30 30 H 1.09001 * 109.46705 * 300.00020 * 18 16 15 31 31 H 1.08997 * 109.47341 * 60.00143 * 18 16 15 32 32 H 1.09004 * 115.55108 * 29.41327 * 19 18 16 33 33 H 1.09005 * 117.49246 * 0.02562 * 20 19 18 34 34 H 1.08992 * 117.50107 * 145.01391 * 20 19 18 35 35 H 1.09009 * 117.49357 * 214.97877 * 21 19 18 36 36 H 1.08997 * 117.49853 * 359.97182 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1032 -2.7574 -0.0019 11 6 0.3471 -4.0835 0.6373 12 6 1.7202 -3.8101 -0.0029 13 1 1.8320 -4.2341 -1.0008 14 6 2.9025 -4.1228 0.9165 15 7 4.1498 -3.7190 0.2626 16 6 5.3288 -3.9005 0.8897 17 8 5.3574 -4.3985 1.9952 18 6 6.6118 -3.4845 0.2174 19 6 7.7941 -3.7973 1.1367 20 6 8.6218 -2.6171 1.6496 21 6 9.2008 -3.5537 0.5863 22 1 -0.4850 0.8400 0.0004 23 1 -0.5271 -2.8722 -0.9996 24 1 -0.7168 -2.1397 0.6538 25 1 -0.1589 -4.9599 0.2326 26 1 0.3596 -4.0654 1.7270 27 1 2.7895 -3.5759 1.8526 28 1 2.9300 -5.1929 1.1219 29 1 4.1271 -3.3217 -0.6219 30 1 6.7248 -4.0307 -0.7191 31 1 6.5845 -2.4143 0.0128 32 1 7.6562 -4.6448 1.8082 33 1 8.3237 -1.6178 1.3324 34 1 9.0286 -2.6883 2.6583 35 1 9.9884 -4.2408 0.8959 36 1 9.2839 -3.1710 -0.4309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670601786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:05 Heat of formation + Delta-G solvation = 32.946085 kcal Electronic energy + Delta-G solvation = -16919.217743 eV Core-core repulsion = 14212.736612 eV Total energy + Delta-G solvation = -2706.481130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.50922 -38.01842 -36.93436 -33.98812 -32.19396 -29.92890 -27.93927 -27.08432 -23.37356 -22.44325 -22.32426 -20.90952 -19.88439 -19.06914 -17.23770 -16.42725 -15.80581 -15.49231 -15.07009 -14.68435 -14.04910 -13.99918 -13.57766 -13.22354 -12.96707 -12.39576 -11.77884 -11.55877 -11.43979 -11.40991 -11.10887 -11.02197 -10.73848 -10.56616 -10.38902 -10.05499 -9.98773 -9.76090 -9.61683 -9.27021 -8.80724 -8.54620 -6.90184 -5.77344 -3.09758 3.00195 3.36372 3.41685 3.43911 3.53225 3.83049 4.42085 4.68954 4.83504 4.89901 5.10923 5.17923 5.39253 5.51314 5.55247 5.58509 5.62257 5.66174 5.76678 5.86712 5.92301 6.05977 6.11015 6.30003 6.32936 6.40943 6.62314 6.73066 6.92689 7.24134 7.40906 7.58585 7.93819 7.97739 8.61378 9.03417 9.70235 10.58840 11.39449 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.006943 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.285599 B = 4031.759455 C = 5170.525257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.158 3.842 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.124 3.876 15 N -0.716 5.716 16 C 0.512 3.488 17 O -0.552 6.552 18 C -0.113 4.113 19 C -0.136 4.136 20 C -0.179 4.179 21 C -0.183 4.183 22 H 0.253 0.747 23 H 0.026 0.974 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -7.852 -1.364 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.430 6.430 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.216 4.216 21 C -0.220 4.220 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.236 0.764 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.802 -7.841 -0.559 13.360 hybrid contribution 0.421 1.275 -0.625 1.481 sum 11.224 -6.566 -1.184 13.057 Atomic orbital electron populations 1.69812 1.04968 1.25246 1.56663 1.24758 0.95621 0.97403 1.02628 0.86197 0.78735 0.83825 0.77485 1.21696 1.21629 1.20694 1.18943 0.90141 0.81940 1.43623 0.90390 1.46073 1.02294 0.98579 1.85955 1.22200 0.87952 0.89627 0.96886 1.23768 0.96191 0.98951 1.00572 1.22509 0.92421 0.87635 0.95636 0.93347 1.21730 0.82474 0.98588 0.97326 1.45987 1.06156 1.63074 1.21388 1.20480 0.85264 0.78424 0.86051 1.90645 1.87484 1.44832 1.20069 1.21227 0.91701 1.03234 0.99086 1.22043 0.90145 1.01370 1.01908 1.23042 1.04298 0.95370 0.98914 1.23000 0.96509 1.03607 0.98902 0.93693 0.95585 0.90831 0.92830 0.90516 0.91080 0.92311 0.76386 0.88765 0.88799 0.86498 0.88764 0.88877 0.88887 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.38 55.49 0.63 -26.33 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.22 -5.86 10.51 -15.06 -0.16 -6.02 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 N -0.60 -14.66 3.57 -170.75 -0.61 -15.27 16 10 C 0.16 3.64 7.51 -2.98 -0.02 3.62 16 11 C -0.16 -2.85 7.86 -25.80 -0.20 -3.06 16 12 C 0.13 2.41 4.33 -66.86 -0.29 2.12 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.25 5.54 -4.04 -0.02 2.23 16 15 N -0.72 -12.00 5.53 -60.29 -0.33 -12.33 16 16 C 0.51 8.53 7.83 -10.99 -0.09 8.45 16 17 O -0.55 -11.09 15.56 5.56 0.09 -11.00 16 18 C -0.11 -1.42 5.98 -27.88 -0.17 -1.58 16 19 C -0.14 -1.69 5.41 -90.62 -0.49 -2.18 16 20 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 21 C -0.18 -1.81 10.25 -26.69 -0.27 -2.08 16 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 27 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 6.26 8.47 -40.82 -0.35 5.91 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.13 7.87 -51.93 -0.41 0.72 16 32 H 0.12 1.64 7.31 -51.93 -0.38 1.26 16 33 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -31.56 304.16 -8.44 -40.00 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.69 Total: 4.54 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.08 Total: -1.12 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.31 Total: -53.93 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.56 -8.44 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670601786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.946 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds