Wall clock time and date at job start Sun Mar 29 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48500 * 109.46983 * 270.00094 * 3 2 1 5 5 H 1.48494 * 109.47355 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.47050 * 150.00572 * 3 2 1 7 7 C 1.38813 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49433 * 359.97438 * 9 7 2 11 11 C 1.53947 * 86.11800 * 204.64345 * 10 9 7 12 12 C 1.47584 * 134.49069 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.76763 * 269.65820 * 12 9 7 14 14 C 1.52997 * 113.76977 * 41.05686 * 12 9 7 15 15 N 1.46505 * 109.47296 * 281.49383 * 14 12 9 16 16 C 1.34770 * 120.00116 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99984 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47164 * 179.97438 * 18 16 15 20 20 C 1.53005 * 117.50154 * 243.74551 * 19 18 16 21 21 C 1.53004 * 117.49838 * 175.08868 * 19 18 16 22 22 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 23 23 H 1.09003 * 113.77250 * 90.33928 * 10 9 7 24 24 H 1.08995 * 113.76824 * 318.94287 * 10 9 7 25 25 H 1.08997 * 113.74250 * 222.05166 * 11 10 9 26 26 H 1.08993 * 113.84054 * 90.74934 * 11 10 9 27 27 H 1.09001 * 109.47378 * 41.49154 * 14 12 9 28 28 H 1.08995 * 109.47542 * 161.49544 * 14 12 9 29 29 H 0.96998 * 119.99703 * 359.97438 * 15 14 12 30 30 H 1.09001 * 109.46705 * 300.00020 * 18 16 15 31 31 H 1.08997 * 109.47341 * 60.00143 * 18 16 15 32 32 H 1.09004 * 115.55108 * 29.41327 * 19 18 16 33 33 H 1.09005 * 117.49246 * 0.02562 * 20 19 18 34 34 H 1.08992 * 117.50107 * 145.01391 * 20 19 18 35 35 H 1.09009 * 117.49357 * 214.97877 * 21 19 18 36 36 H 1.08997 * 117.49853 * 359.97182 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1032 -2.7574 -0.0019 11 6 0.3471 -4.0835 0.6373 12 6 1.7202 -3.8101 -0.0029 13 1 1.8320 -4.2341 -1.0008 14 6 2.9025 -4.1228 0.9165 15 7 4.1498 -3.7190 0.2626 16 6 5.3288 -3.9005 0.8897 17 8 5.3574 -4.3985 1.9952 18 6 6.6118 -3.4845 0.2174 19 6 7.7941 -3.7973 1.1367 20 6 8.6218 -2.6171 1.6496 21 6 9.2008 -3.5537 0.5863 22 1 -0.4850 0.8400 0.0004 23 1 -0.5271 -2.8722 -0.9996 24 1 -0.7168 -2.1397 0.6538 25 1 -0.1589 -4.9599 0.2326 26 1 0.3596 -4.0654 1.7270 27 1 2.7895 -3.5759 1.8526 28 1 2.9300 -5.1929 1.1219 29 1 4.1271 -3.3217 -0.6219 30 1 6.7248 -4.0307 -0.7191 31 1 6.5845 -2.4143 0.0128 32 1 7.6562 -4.6448 1.8082 33 1 8.3237 -1.6178 1.3324 34 1 9.0286 -2.6883 2.6583 35 1 9.9884 -4.2408 0.8959 36 1 9.2839 -3.1710 -0.4309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670601786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:05 Heat of formation + Delta-G solvation = 12.361397 kcal Electronic energy + Delta-G solvation = -16920.110362 eV Core-core repulsion = 14212.736612 eV Total energy + Delta-G solvation = -2707.373749 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85463 -39.62217 -37.93196 -35.45666 -34.19345 -31.11270 -29.85176 -28.50869 -25.28606 -23.89907 -23.22045 -22.10163 -21.15484 -20.68695 -18.81587 -17.95298 -17.15138 -17.06474 -16.54559 -15.99690 -15.75899 -15.27585 -14.91894 -14.80668 -14.33617 -13.76852 -13.39629 -13.13099 -12.94627 -12.67538 -12.55220 -12.40968 -12.33154 -12.30453 -11.84298 -11.51853 -11.36695 -11.28608 -10.93959 -10.82474 -10.65928 -9.98028 -8.87467 -7.85805 -5.17411 1.44054 1.45828 1.53289 1.70487 2.27413 2.48726 2.93915 3.34035 3.40099 3.78585 3.79009 4.00012 4.05606 4.14874 4.20601 4.36203 4.56983 4.62748 4.67169 4.73049 4.78071 4.80582 4.90024 5.04713 5.06339 5.11876 5.27285 5.34534 5.35323 5.51603 5.62676 5.76030 5.99268 6.63037 6.96563 7.31015 7.66715 8.61581 9.31216 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.006943 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.285599 B = 4031.759455 C = 5170.525257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.213 4.213 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.715 5.715 16 C 0.507 3.493 17 O -0.591 6.591 18 C -0.103 4.103 19 C -0.158 4.158 20 C -0.191 4.191 21 C -0.156 4.156 22 H 0.245 0.755 23 H 0.023 0.977 24 H 0.037 0.963 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.409 0.591 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.666 -8.812 -2.473 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.341 4.341 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.007 3.993 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.472 6.472 18 C -0.142 4.142 19 C -0.177 4.177 20 C -0.228 4.228 21 C -0.193 4.193 22 H 0.054 0.946 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.245 0.755 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.716 -8.832 -1.690 15.574 hybrid contribution -0.152 1.484 -0.259 1.515 sum 12.565 -7.347 -1.949 14.685 Atomic orbital electron populations 1.70000 1.06325 1.25155 1.59051 1.25526 0.96420 1.00558 1.03984 0.85231 0.77664 0.79995 0.77424 1.21170 1.22758 1.19669 1.19329 0.90757 0.83061 1.41000 0.89591 1.46422 1.03242 1.00013 1.85945 1.22169 0.87177 0.91788 0.96459 1.23566 0.95280 0.97839 1.00364 1.22675 0.93220 0.84577 0.96825 0.90952 1.21492 0.83003 0.99139 0.95650 1.45989 1.05849 1.63020 1.21625 1.21235 0.86293 0.77361 0.85582 1.90629 1.88075 1.46603 1.21914 1.21250 0.89184 1.04030 0.99780 1.21980 0.91653 1.01319 1.02734 1.23133 1.04583 0.95308 0.99739 1.23097 0.94698 1.02278 0.99247 0.94634 0.95909 0.94420 0.88754 0.90574 0.94456 0.90443 0.75523 0.85822 0.87830 0.88692 0.88625 0.88917 0.87652 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.46 11.38 21.65 0.25 -57.21 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.21 -11.33 10.51 84.03 0.88 -10.45 16 8 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 9 N -0.63 -30.29 3.57 -694.14 -2.48 -32.77 16 10 C 0.15 6.86 7.51 86.48 0.65 7.51 16 11 C -0.13 -4.56 7.86 31.26 0.25 -4.31 16 12 C 0.13 4.82 4.33 45.09 0.20 5.02 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.13 4.62 5.54 86.38 0.48 5.10 16 15 N -0.71 -22.64 5.53 -463.06 -2.56 -25.20 16 16 C 0.51 16.20 7.83 87.66 0.69 16.89 16 17 O -0.59 -23.58 15.56 -3.02 -0.05 -23.63 16 18 C -0.10 -2.34 5.98 29.85 0.18 -2.16 16 19 C -0.16 -3.66 5.41 -10.79 -0.06 -3.71 16 20 C -0.19 -3.98 10.18 30.62 0.31 -3.66 16 21 C -0.16 -2.61 10.25 30.62 0.31 -2.30 16 22 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 1.98 7.15 -2.39 -0.02 1.97 16 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.41 11.76 8.47 -92.71 -0.79 10.97 16 30 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 2.19 7.87 -2.39 -0.02 2.17 16 32 H 0.09 2.63 7.31 -2.38 -0.02 2.61 16 33 H 0.10 1.95 8.03 -2.38 -0.02 1.93 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.33 304.16 1.81 -67.52 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.28 Total: 19.45 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.35 Total: 4.31 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.79 Total: -115.18 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.33 1.81 -67.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670601786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.877 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds