Wall clock time and date at job start Sun Mar 29 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51269 * 137.67651 * 2 1 4 4 N 1.47119 * 87.70326 * 205.77911 * 3 2 1 5 5 C 1.34773 * 136.18606 * 153.54681 * 4 3 2 6 6 O 1.21589 * 120.00175 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00167 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00130 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47363 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.46638 * 300.00047 * 9 8 7 11 11 C 1.53002 * 109.46949 * 59.99682 * 9 8 7 12 12 C 1.50692 * 109.47393 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00350 * 1.34901 * 12 9 8 14 14 C 1.37876 * 120.00038 * 181.34333 * 12 9 8 15 15 N 1.31520 * 120.00028 * 193.97822 * 14 12 9 16 16 Si 1.86795 * 119.99862 * 13.97931 * 14 12 9 17 17 H 1.48506 * 109.47304 * 84.54862 * 16 14 12 18 18 H 1.48506 * 109.47437 * 204.54469 * 16 14 12 19 19 H 1.48503 * 109.47336 * 324.54913 * 16 14 12 20 20 C 1.47125 * 87.62872 * 333.81248 * 4 3 2 21 21 H 1.07997 * 119.99879 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.99926 * 179.97438 * 1 2 3 23 23 H 1.09007 * 113.51162 * 91.07384 * 3 2 1 24 24 H 1.09002 * 113.57708 * 320.50341 * 3 2 1 25 25 H 0.97000 * 119.99887 * 0.02562 * 7 5 4 26 26 H 1.09002 * 109.47647 * 60.00194 * 8 7 5 27 27 H 1.09003 * 109.47337 * 300.00007 * 8 7 5 28 28 H 1.09003 * 109.46676 * 69.36593 * 10 9 8 29 29 H 1.08995 * 109.46492 * 189.36189 * 10 9 8 30 30 H 1.08994 * 109.47069 * 309.36572 * 10 9 8 31 31 H 1.08994 * 109.47113 * 60.00468 * 11 9 8 32 32 H 1.09004 * 109.46734 * 180.02562 * 11 9 8 33 33 H 1.09004 * 109.47031 * 300.00297 * 11 9 8 34 34 H 0.97005 * 119.99209 * 179.97438 * 15 14 12 35 35 H 1.08997 * 113.52050 * 140.89835 * 20 4 3 36 36 H 1.09003 * 113.51065 * 271.48256 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0185 0.0000 4 7 3.2761 0.0001 -0.6393 5 6 4.3522 0.0003 -1.4508 6 8 4.8378 1.0534 -1.8163 7 7 4.8900 -1.1668 -1.8571 8 6 6.0600 -1.1666 -2.7387 9 6 6.4665 -2.6091 -3.0471 10 6 6.8106 -3.3318 -1.7431 11 6 5.3070 -3.3289 -3.7386 12 6 7.6697 -2.6089 -3.9545 13 1 8.1146 -1.6738 -4.2612 14 6 8.2026 -3.8025 -4.3930 15 7 9.3947 -3.8259 -4.9480 16 14 7.2315 -5.3863 -4.1988 17 1 6.2960 -5.5367 -5.3423 18 1 8.1663 -6.5398 -4.1691 19 1 6.4600 -5.3416 -2.9307 20 6 2.4244 -1.0186 -0.0057 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 2.7625 1.2975 0.9994 24 1 2.2317 1.8821 -0.6354 25 1 4.5024 -2.0069 -1.5658 26 1 6.8860 -0.6534 -2.2462 27 1 5.8148 -0.6520 -3.6678 28 1 5.9022 -3.4790 -1.1588 29 1 7.2567 -4.2998 -1.9712 30 1 7.5176 -2.7316 -1.1707 31 1 5.0619 -2.8141 -4.6675 32 1 5.5965 -4.3567 -3.9579 33 1 4.4364 -3.3291 -3.0826 34 1 9.7698 -4.6658 -5.2562 35 1 2.2234 -1.8772 -0.6464 36 1 2.7575 -1.3044 0.9921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683046170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:16 Heat of formation + Delta-G solvation = 51.971820 kcal Electronic energy + Delta-G solvation = -17185.329316 eV Core-core repulsion = 14479.673204 eV Total energy + Delta-G solvation = -2705.656112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36932 -38.29596 -36.54352 -33.27549 -31.95644 -31.30213 -27.48934 -26.39532 -26.35664 -25.36512 -24.43824 -20.10165 -19.18545 -18.46780 -17.77719 -16.19132 -15.98054 -15.89367 -15.23622 -14.60839 -14.41127 -14.16822 -13.35141 -13.23090 -13.04782 -12.88784 -12.58389 -12.29089 -12.18423 -12.04224 -11.30574 -10.62309 -10.42030 -10.31267 -10.17088 -10.06440 -10.02301 -9.55318 -9.13113 -8.85819 -8.68607 -8.47778 -8.30320 -6.14329 -4.11475 1.77625 2.72469 3.23898 3.30920 3.38433 3.53849 3.89436 4.22176 4.35697 4.56100 5.16038 5.16684 5.19361 5.36965 5.42928 5.55116 5.61061 5.80121 6.01376 6.05113 6.08306 6.35298 6.39118 6.49159 6.54039 6.63380 6.71002 6.82721 7.00122 7.22741 7.43556 7.45059 7.73014 8.29041 8.46802 8.89856 8.93200 9.49498 10.98774 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042800 B = 0.005709 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.042874 B = 4903.027321 C = 5299.972590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.172 4.172 3 C 0.158 3.842 4 N -0.668 5.668 5 C 0.734 3.266 6 O -0.590 6.590 7 N -0.733 5.733 8 C 0.160 3.840 9 C 0.028 3.972 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.512 4.512 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.891 5.891 16 Si 0.886 3.114 17 H -0.286 1.286 18 H -0.305 1.305 19 H -0.250 1.250 20 C 0.131 3.869 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.392 0.608 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 2.681 11.395 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.173 4.173 3 C 0.034 3.966 4 N -0.409 5.409 5 C 0.437 3.563 6 O -0.468 6.468 7 N -0.387 5.387 8 C 0.037 3.963 9 C 0.027 3.973 10 C -0.198 4.198 11 C -0.203 4.203 12 C -0.550 4.550 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.718 3.282 17 H -0.214 1.214 18 H -0.234 1.234 19 H -0.176 1.176 20 C 0.008 3.992 21 H 0.130 0.870 22 H 0.130 0.870 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.226 0.774 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.100 3.359 10.836 19.695 hybrid contribution -0.595 -1.428 0.111 1.551 sum -16.695 1.930 10.946 20.056 Atomic orbital electron populations 1.22839 0.92690 1.02718 1.00032 1.22897 0.93960 0.98626 1.01794 1.21879 0.84382 0.92684 0.97624 1.48439 1.31022 1.10703 1.50783 1.15251 0.77794 0.84921 0.78352 1.90914 1.63081 1.30955 1.61833 1.45437 1.33883 1.06042 1.53388 1.21419 0.84384 0.98688 0.91763 1.18740 0.94646 0.90049 0.93868 1.22281 0.98608 1.01177 0.97718 1.22347 0.97606 1.00034 1.00311 1.20709 1.10434 0.94790 1.29083 0.90471 1.24966 0.94248 0.98797 0.94694 1.69957 1.14768 1.27114 1.40920 0.87291 0.78955 0.82791 0.79115 1.21366 1.23385 1.17584 1.22038 0.85987 0.92962 0.98213 0.87007 0.87017 0.89211 0.90063 0.77404 0.91991 0.92125 0.96095 0.92535 0.93378 0.92755 0.94065 0.95345 0.92561 0.90254 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 14.71 29.01 0.43 -0.56 16 2 C -0.17 -1.53 7.52 -100.68 -0.76 -2.29 16 3 C 0.16 1.71 8.59 -10.23 -0.09 1.62 16 4 N -0.67 -9.42 3.71 -197.50 -0.73 -10.15 16 5 C 0.73 13.59 8.80 -86.92 -0.76 12.83 16 6 O -0.59 -13.34 17.12 5.29 0.09 -13.25 16 7 N -0.73 -13.10 5.01 -65.22 -0.33 -13.42 16 8 C 0.16 3.36 4.49 -4.04 -0.02 3.35 16 9 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 10 C -0.14 -2.90 7.53 37.16 0.28 -2.62 16 11 C -0.15 -3.02 7.52 37.16 0.28 -2.74 16 12 C -0.51 -13.92 8.62 -34.44 -0.30 -14.21 16 13 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.08 2.11 5.32 -17.82 -0.09 2.02 16 15 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 16 Si 0.89 21.19 22.79 -169.99 -3.87 17.32 16 17 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 18 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.25 -5.43 4.65 56.52 0.26 -5.17 16 20 C 0.13 1.29 8.24 -10.37 -0.09 1.20 16 21 H 0.11 0.62 8.06 -52.49 -0.42 0.20 16 22 H 0.11 0.61 8.06 -52.48 -0.42 0.19 16 23 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.39 6.14 5.98 -40.82 -0.24 5.89 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 29 H 0.06 1.24 4.30 -51.93 -0.22 1.01 16 30 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 33 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 287.34 15.07 4.33 4.33 Total: -1.00 -32.63 287.34 -6.17 -38.80 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.23 Total: 3.23 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.20 Total: -0.86 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.29 Total: -49.57 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -3.87 Total: 17.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.63 -6.17 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683046170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.767 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds