Wall clock time and date at job start Sun Mar 29 2020 22:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51269 * 137.67651 * 2 1 4 4 N 1.47119 * 87.70326 * 205.77911 * 3 2 1 5 5 C 1.34773 * 136.18606 * 153.54681 * 4 3 2 6 6 O 1.21589 * 120.00175 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00167 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00130 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47363 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.46638 * 300.00047 * 9 8 7 11 11 C 1.53002 * 109.46949 * 59.99682 * 9 8 7 12 12 C 1.50692 * 109.47393 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00350 * 1.34901 * 12 9 8 14 14 C 1.37876 * 120.00038 * 181.34333 * 12 9 8 15 15 N 1.31520 * 120.00028 * 193.97822 * 14 12 9 16 16 Si 1.86795 * 119.99862 * 13.97931 * 14 12 9 17 17 H 1.48506 * 109.47304 * 84.54862 * 16 14 12 18 18 H 1.48506 * 109.47437 * 204.54469 * 16 14 12 19 19 H 1.48503 * 109.47336 * 324.54913 * 16 14 12 20 20 C 1.47125 * 87.62872 * 333.81248 * 4 3 2 21 21 H 1.07997 * 119.99879 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.99926 * 179.97438 * 1 2 3 23 23 H 1.09007 * 113.51162 * 91.07384 * 3 2 1 24 24 H 1.09002 * 113.57708 * 320.50341 * 3 2 1 25 25 H 0.97000 * 119.99887 * 0.02562 * 7 5 4 26 26 H 1.09002 * 109.47647 * 60.00194 * 8 7 5 27 27 H 1.09003 * 109.47337 * 300.00007 * 8 7 5 28 28 H 1.09003 * 109.46676 * 69.36593 * 10 9 8 29 29 H 1.08995 * 109.46492 * 189.36189 * 10 9 8 30 30 H 1.08994 * 109.47069 * 309.36572 * 10 9 8 31 31 H 1.08994 * 109.47113 * 60.00468 * 11 9 8 32 32 H 1.09004 * 109.46734 * 180.02562 * 11 9 8 33 33 H 1.09004 * 109.47031 * 300.00297 * 11 9 8 34 34 H 0.97005 * 119.99209 * 179.97438 * 15 14 12 35 35 H 1.08997 * 113.52050 * 140.89835 * 20 4 3 36 36 H 1.09003 * 113.51065 * 271.48256 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0185 0.0000 4 7 3.2761 0.0001 -0.6393 5 6 4.3522 0.0003 -1.4508 6 8 4.8378 1.0534 -1.8163 7 7 4.8900 -1.1668 -1.8571 8 6 6.0600 -1.1666 -2.7387 9 6 6.4665 -2.6091 -3.0471 10 6 6.8106 -3.3318 -1.7431 11 6 5.3070 -3.3289 -3.7386 12 6 7.6697 -2.6089 -3.9545 13 1 8.1146 -1.6738 -4.2612 14 6 8.2026 -3.8025 -4.3930 15 7 9.3947 -3.8259 -4.9480 16 14 7.2315 -5.3863 -4.1988 17 1 6.2960 -5.5367 -5.3423 18 1 8.1663 -6.5398 -4.1691 19 1 6.4600 -5.3416 -2.9307 20 6 2.4244 -1.0186 -0.0057 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 2.7625 1.2975 0.9994 24 1 2.2317 1.8821 -0.6354 25 1 4.5024 -2.0069 -1.5658 26 1 6.8860 -0.6534 -2.2462 27 1 5.8148 -0.6520 -3.6678 28 1 5.9022 -3.4790 -1.1588 29 1 7.2567 -4.2998 -1.9712 30 1 7.5176 -2.7316 -1.1707 31 1 5.0619 -2.8141 -4.6675 32 1 5.5965 -4.3567 -3.9579 33 1 4.4364 -3.3291 -3.0826 34 1 9.7698 -4.6658 -5.2562 35 1 2.2234 -1.8772 -0.6464 36 1 2.7575 -1.3044 0.9921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683046170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:15 Heat of formation + Delta-G solvation = 27.861140 kcal Electronic energy + Delta-G solvation = -17186.374834 eV Core-core repulsion = 14479.673204 eV Total energy + Delta-G solvation = -2706.701630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49541 -39.58877 -38.20376 -35.00657 -33.55192 -32.50737 -28.68543 -28.03228 -27.23985 -27.10483 -26.11248 -21.47163 -20.96498 -19.16003 -19.04403 -18.07063 -17.33407 -17.04473 -17.00798 -15.75164 -15.62711 -15.46689 -14.91264 -14.62031 -14.47705 -14.20508 -14.03477 -13.93591 -13.76365 -13.01008 -12.97656 -12.39995 -12.15854 -11.96695 -11.78773 -11.50655 -11.28368 -11.07603 -10.62580 -10.43279 -10.36906 -10.12880 -9.54735 -8.30309 -6.32472 1.09317 1.36584 1.37990 1.51360 1.63648 2.14927 2.34828 2.99811 3.05967 3.26806 3.82317 4.04237 4.30514 4.38491 4.38980 4.50121 4.53027 4.69402 4.75915 4.77111 4.81605 4.85301 4.92332 5.02498 5.04216 5.15818 5.40234 5.50878 5.52238 5.71192 5.77265 5.78452 6.25402 6.32812 6.71489 7.01362 7.32202 7.54398 8.86993 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042800 B = 0.005709 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.042874 B = 4903.027321 C = 5299.972590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.187 4.187 3 C 0.149 3.851 4 N -0.675 5.675 5 C 0.728 3.272 6 O -0.643 6.643 7 N -0.721 5.721 8 C 0.177 3.823 9 C 0.028 3.972 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.520 4.520 13 H 0.027 0.973 14 C 0.017 3.983 15 N -0.946 5.946 16 Si 0.946 3.054 17 H -0.281 1.281 18 H -0.313 1.313 19 H -0.204 1.204 20 C 0.132 3.868 21 H 0.125 0.875 22 H 0.133 0.867 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.407 0.593 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.763 0.837 13.650 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.188 4.188 3 C 0.026 3.974 4 N -0.414 5.414 5 C 0.430 3.570 6 O -0.526 6.526 7 N -0.377 5.377 8 C 0.052 3.948 9 C 0.027 3.973 10 C -0.195 4.195 11 C -0.201 4.201 12 C -0.558 4.558 13 H 0.045 0.955 14 C -0.180 4.180 15 N -0.585 5.585 16 Si 0.775 3.225 17 H -0.208 1.208 18 H -0.243 1.243 19 H -0.127 1.127 20 C 0.011 3.989 21 H 0.143 0.857 22 H 0.151 0.849 23 H 0.124 0.876 24 H 0.086 0.914 25 H 0.244 0.756 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.036 1.506 13.156 24.017 hybrid contribution 0.538 -0.687 -0.558 1.036 sum -19.498 0.818 12.598 23.229 Atomic orbital electron populations 1.23197 0.91866 1.04361 0.96155 1.22639 0.94111 0.96828 1.05252 1.22152 0.84923 0.92496 0.97792 1.48508 1.29504 1.13928 1.49498 1.15397 0.78632 0.84041 0.78885 1.90870 1.65098 1.32685 1.63940 1.45028 1.32927 1.06790 1.52933 1.20928 0.84996 0.97609 0.91233 1.18664 0.93440 0.91204 0.93994 1.22193 1.00451 1.00028 0.96872 1.22271 0.98088 0.99010 1.00757 1.20998 1.12090 0.92922 1.29765 0.95512 1.25872 0.94960 1.02865 0.94334 1.70120 1.17075 1.28185 1.43127 0.86306 0.77669 0.77227 0.81281 1.20834 1.24285 1.12724 1.22313 0.84982 0.92598 0.98998 0.85689 0.84939 0.87559 0.91365 0.75650 0.94402 0.94331 0.91741 0.93383 0.94156 0.93565 0.94439 0.91061 0.92608 0.89080 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 14.71 67.78 1.00 -0.08 16 2 C -0.19 -2.64 7.52 -16.21 -0.12 -2.77 16 3 C 0.15 2.94 8.59 82.03 0.70 3.64 16 4 N -0.68 -17.64 3.71 -897.02 -3.32 -20.96 16 5 C 0.73 26.46 8.80 179.05 1.58 28.04 16 6 O -0.64 -29.87 17.12 -4.00 -0.07 -29.93 16 7 N -0.72 -24.57 5.01 -478.52 -2.40 -26.97 16 8 C 0.18 7.52 4.49 86.38 0.39 7.91 16 9 C 0.03 1.23 0.50 -52.92 -0.03 1.20 16 10 C -0.14 -5.32 7.53 71.98 0.54 -4.78 16 11 C -0.14 -5.50 7.52 71.98 0.54 -4.96 16 12 C -0.52 -29.20 8.62 25.60 0.22 -28.98 16 13 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 14 C 0.02 0.98 5.32 84.65 0.45 1.43 16 15 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 16 Si 0.95 42.72 22.79 68.60 1.56 44.28 16 17 H -0.28 -12.43 7.10 99.48 0.71 -11.72 16 18 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.20 -7.71 4.65 99.48 0.46 -7.24 16 20 C 0.13 2.07 8.24 81.94 0.68 2.74 16 21 H 0.13 0.84 8.06 -2.91 -0.02 0.81 16 22 H 0.13 0.72 8.06 -2.91 -0.02 0.70 16 23 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.41 11.14 5.98 -92.71 -0.55 10.58 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.92 7.13 -2.39 -0.02 1.90 16 29 H 0.05 1.93 4.30 -2.39 -0.01 1.92 16 30 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.47 2.25 -2.38 -0.01 1.46 16 33 H 0.07 2.10 6.86 -2.38 -0.02 2.08 16 34 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -75.63 287.34 2.30 -73.33 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.28 Total: 15.67 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.95 Total: 3.40 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -5.42 Total: -106.75 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.07 Total: -29.93 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.56 Total: 44.28 kcal Total: -75.63 2.30 -73.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683046170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.191 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds