Wall clock time and date at job start Sun Mar 29 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32991 * 119.99907 * 2 1 4 4 C 1.50706 * 120.00039 * 180.02562 * 3 2 1 5 5 C 1.47100 * 119.99983 * 359.97438 * 3 2 1 6 6 O 1.21614 * 120.00223 * 261.32441 * 5 3 2 7 7 N 1.34778 * 119.99731 * 81.33338 * 5 3 2 8 8 C 1.46967 * 120.59121 * 175.31692 * 7 5 3 9 9 C 1.53366 * 108.63342 * 235.24092 * 8 7 5 10 10 N 1.46966 * 108.63812 * 310.57783 * 9 8 7 11 11 C 1.36933 * 120.59815 * 235.20091 * 10 9 8 12 12 H 1.08001 * 119.99227 * 24.23218 * 11 10 9 13 13 C 1.38812 * 120.00324 * 203.95724 * 11 10 9 14 14 N 1.31617 * 120.00028 * 218.58334 * 13 11 10 15 15 Si 1.86795 * 119.99851 * 38.58188 * 13 11 10 16 16 H 1.48492 * 109.47171 * 95.48413 * 15 13 11 17 17 H 1.48506 * 109.47004 * 215.48375 * 15 13 11 18 18 H 1.48499 * 109.47434 * 335.48048 * 15 13 11 19 19 C 1.46969 * 118.81152 * 55.47547 * 10 9 8 20 20 C 1.46964 * 120.59252 * 355.32895 * 7 5 3 21 21 H 1.09007 * 109.46932 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47245 * 299.99822 * 1 2 3 23 23 H 1.08993 * 109.47282 * 59.99851 * 1 2 3 24 24 H 1.08009 * 120.00185 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47155 * 275.04223 * 4 3 2 26 26 H 1.09005 * 109.46673 * 35.03871 * 4 3 2 27 27 H 1.08995 * 109.47026 * 155.03876 * 4 3 2 28 28 H 1.09001 * 109.60758 * 115.49962 * 8 7 5 29 29 H 1.08997 * 109.61201 * 354.98782 * 8 7 5 30 30 H 1.09002 * 109.61512 * 190.83502 * 9 8 7 31 31 H 1.09007 * 109.75165 * 70.40290 * 9 8 7 32 32 H 0.96992 * 120.00242 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.60893 * 64.26378 * 19 10 9 34 34 H 1.09000 * 109.61257 * 184.77865 * 19 10 9 35 35 H 1.08996 * 109.61235 * 244.50133 * 20 7 5 36 36 H 1.08996 * 109.61018 * 4.84663 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 1.2703 3.0315 -1.0419 7 7 0.9467 2.9215 1.1530 8 6 0.2998 4.2408 1.1852 9 6 1.0046 5.1066 2.2368 10 7 1.1082 4.3379 3.4852 11 6 0.6115 4.8420 4.6574 12 1 -0.1764 5.5804 4.6366 13 6 1.1166 4.3999 5.8724 14 7 0.3072 4.2166 6.8940 15 14 2.9449 4.0650 6.0575 16 1 3.6117 5.2615 6.6308 17 1 3.1465 2.9048 6.9622 18 1 3.5300 3.7623 4.7266 19 6 1.7600 3.0210 3.4541 20 6 1.0502 2.1527 2.4013 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 2.0470 -0.9354 -0.0004 25 1 4.0427 1.0612 1.0229 26 1 4.0420 0.3104 -0.5910 27 1 4.0421 2.0835 -0.4342 28 1 -0.7513 4.1265 1.4502 29 1 0.3836 4.7133 0.2066 30 1 0.4252 6.0130 2.4125 31 1 2.0022 5.3721 1.8869 32 1 0.6602 3.9080 7.7431 33 1 2.8102 3.1389 3.1871 34 1 1.6797 2.5498 4.4336 35 1 0.0526 1.8898 2.7529 36 1 1.6271 1.2449 2.2250 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686985942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:19 Heat of formation + Delta-G solvation = -7.234188 kcal Electronic energy + Delta-G solvation = -17830.971232 eV Core-core repulsion = 15122.747754 eV Total energy + Delta-G solvation = -2708.223478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31094 -38.66321 -36.42000 -35.51183 -33.47356 -32.18599 -31.11620 -28.98111 -26.17220 -25.17573 -24.79825 -23.45415 -21.41041 -19.67066 -18.27403 -17.74439 -16.81675 -16.67663 -16.47743 -16.02812 -15.49212 -15.17583 -14.95017 -14.60574 -14.45762 -14.17945 -13.95259 -13.67753 -13.49398 -13.26681 -12.79404 -12.71345 -12.54229 -12.44442 -12.22477 -12.12435 -11.91630 -11.41651 -10.87760 -10.67909 -9.91358 -9.83626 -8.94208 -8.23932 -5.36952 0.83185 1.35489 1.48058 1.52376 1.54316 2.06672 2.44555 2.91050 3.36440 3.51050 3.94632 4.08390 4.12696 4.29856 4.33093 4.41707 4.50313 4.57293 4.61411 4.66368 4.73608 4.80021 4.81485 4.84466 4.96615 5.00951 5.13444 5.15785 5.43191 5.52049 5.65881 5.82890 6.08841 6.40578 6.87326 7.07486 7.61344 8.03362 8.93501 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030012 B = 0.007902 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.720861 B = 3542.746896 C = 3761.847338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.099 4.099 5 C 0.554 3.446 6 O -0.590 6.590 7 N -0.596 5.596 8 C 0.103 3.897 9 C 0.134 3.866 10 N -0.612 5.612 11 C -0.268 4.268 12 H 0.053 0.947 13 C -0.009 4.009 14 N -0.923 5.923 15 Si 0.895 3.105 16 H -0.305 1.305 17 H -0.291 1.291 18 H -0.237 1.237 19 C 0.128 3.872 20 C 0.101 3.899 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.160 0.840 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -10.409 -12.042 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.193 4.193 4 C -0.156 4.156 5 C 0.345 3.655 6 O -0.472 6.472 7 N -0.327 5.327 8 C -0.021 4.021 9 C 0.008 3.992 10 N -0.336 5.336 11 C -0.397 4.397 12 H 0.071 0.929 13 C -0.208 4.208 14 N -0.566 5.566 15 Si 0.722 3.278 16 H -0.234 1.234 17 H -0.218 1.218 18 H -0.160 1.160 19 C 0.002 3.998 20 C -0.023 4.023 21 H 0.112 0.888 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.177 0.823 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.355 -10.110 -12.407 16.587 hybrid contribution 0.576 0.528 0.782 1.105 sum 4.930 -9.582 -11.625 15.852 Atomic orbital electron populations 1.21047 0.93060 1.04089 1.01510 1.23626 0.96276 0.97289 0.94617 1.21546 0.98004 0.91959 1.07774 1.20678 0.88242 1.03272 1.03398 1.19157 0.77765 0.86116 0.82506 1.90725 1.61351 1.62528 1.32597 1.48120 1.57080 1.19015 1.08452 1.22043 0.96601 0.83387 1.00103 1.21402 0.98169 0.94183 0.85430 1.44421 1.68978 1.15585 1.04612 1.18715 1.13580 1.23892 0.83506 0.92924 1.25609 1.00661 0.99331 0.95166 1.70217 1.35570 1.46372 1.04395 0.86657 0.85467 0.76481 0.79197 1.23399 1.21773 1.16049 1.21826 0.94698 0.85666 0.97604 1.22406 1.01851 0.94781 0.83245 0.88806 0.92050 0.92867 0.82281 0.90021 0.88541 0.93245 0.91507 0.89318 0.90641 0.95245 0.92742 0.94477 0.91868 0.91315 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.16 71.23 0.65 -2.16 16 2 C -0.10 -1.91 9.28 24.52 0.23 -1.68 16 3 C -0.19 -4.69 4.04 -18.70 -0.08 -4.76 16 4 C -0.10 -1.97 10.02 71.24 0.71 -1.26 16 5 C 0.55 18.27 5.90 86.57 0.51 18.78 16 6 O -0.59 -23.51 16.53 -4.07 -0.07 -23.57 16 7 N -0.60 -19.89 2.95 -821.43 -2.42 -22.31 16 8 C 0.10 3.58 6.58 86.41 0.57 4.14 16 9 C 0.13 5.19 6.67 86.41 0.58 5.76 16 10 N -0.61 -27.74 2.75 -697.31 -1.92 -29.66 16 11 C -0.27 -14.56 9.86 84.03 0.83 -13.73 16 12 H 0.05 3.11 8.04 -2.91 -0.02 3.09 16 13 C -0.01 -0.52 4.80 84.86 0.41 -0.11 16 14 N -0.92 -54.97 13.97 21.65 0.30 -54.67 16 15 Si 0.90 42.32 26.38 68.60 1.81 44.13 16 16 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.24 -10.26 5.00 99.48 0.50 -9.76 16 19 C 0.13 5.07 4.57 86.57 0.40 5.47 16 20 C 0.10 3.23 5.36 86.57 0.46 3.70 16 21 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.06 1.40 6.88 -2.39 -0.02 1.38 16 23 H 0.05 1.25 8.09 -2.39 -0.02 1.23 16 24 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 1.39 8.11 -2.38 -0.02 1.37 16 27 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 3.03 7.01 -2.39 -0.02 3.02 16 30 H 0.08 2.87 7.92 -2.39 -0.02 2.85 16 31 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 33 H 0.04 1.45 6.83 -2.39 -0.02 1.43 16 34 H 0.06 2.69 5.39 -2.39 -0.01 2.68 16 35 H 0.07 2.26 8.08 -2.39 -0.02 2.25 16 36 H 0.11 2.80 5.87 -2.39 -0.01 2.78 16 Total: -1.00 -67.29 287.27 3.82 -63.47 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.84 Total: 8.46 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.27 Total: 14.14 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -4.03 Total: -106.63 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.57 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.81 Total: 44.13 kcal Total: -67.29 3.82 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686985942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.235 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds