Wall clock time and date at job start Sun Mar 29 2020 22:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47010 * 2 1 4 4 C 1.32993 * 119.99972 * 125.41769 * 3 2 1 5 5 C 1.50701 * 120.00075 * 5.40870 * 4 3 2 6 6 C 1.47098 * 119.99816 * 185.14329 * 4 3 2 7 7 O 1.21615 * 120.00179 * 0.26688 * 6 4 3 8 8 N 1.34778 * 120.00096 * 180.27317 * 6 4 3 9 9 C 1.46504 * 120.00302 * 179.97438 * 8 6 4 10 10 C 1.53943 * 113.74041 * 253.74384 * 9 8 6 11 11 N 1.47819 * 86.03438 * 222.08379 * 10 9 8 12 12 C 1.36934 * 134.45593 * 204.64941 * 11 10 9 13 13 H 1.08001 * 119.99919 * 179.86233 * 12 11 10 14 14 C 1.38811 * 120.00316 * 359.85888 * 12 11 10 15 15 N 1.31621 * 119.99764 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00417 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47399 * 89.99911 * 16 14 12 18 18 H 1.48499 * 109.47540 * 209.99861 * 16 14 12 19 19 H 1.48504 * 109.47153 * 330.00204 * 16 14 12 20 20 C 1.47579 * 91.05144 * 24.54607 * 11 10 9 21 21 H 1.09002 * 109.47523 * 299.99901 * 1 2 3 22 22 H 1.08994 * 109.47365 * 59.99941 * 1 2 3 23 23 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46873 * 239.99780 * 2 1 3 25 25 H 1.09006 * 109.46963 * 119.99954 * 2 1 3 26 26 H 1.07999 * 119.99648 * 305.41100 * 3 2 1 27 27 H 1.08997 * 109.47067 * 174.52020 * 5 4 3 28 28 H 1.08999 * 109.47060 * 294.51603 * 5 4 3 29 29 H 1.08995 * 109.46702 * 54.51995 * 5 4 3 30 30 H 0.97000 * 119.99849 * 359.97438 * 8 6 4 31 31 H 1.08998 * 112.94159 * 25.32945 * 9 8 6 32 32 H 1.09001 * 113.77094 * 336.33805 * 10 9 8 33 33 H 1.08995 * 113.77811 * 107.74556 * 10 9 8 34 34 H 0.97007 * 119.99957 * 180.02562 * 15 14 12 35 35 H 1.09002 * 113.77367 * 221.15492 * 20 11 10 36 36 H 1.08999 * 113.76644 * 89.75720 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8832 1.8253 0.9386 5 6 3.4398 0.8346 1.9286 6 6 3.2857 3.2385 1.0069 7 8 2.8365 4.0379 0.2080 8 7 4.1523 3.6474 1.9546 9 6 4.5536 5.0548 2.0223 10 6 5.9872 5.3150 1.5256 11 7 6.1143 6.2230 2.6850 12 6 6.8962 7.3104 2.9704 13 1 6.7917 7.8167 3.9186 14 6 7.8233 7.7618 2.0411 15 7 7.9504 7.1450 0.8854 16 14 8.8904 9.2446 2.4307 17 1 10.1421 8.7941 3.0908 18 1 9.2240 9.9589 1.1722 19 1 8.1536 10.1598 3.3390 20 6 5.0590 5.4892 3.4100 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7013 2.1105 -0.7623 27 1 4.1868 1.3252 2.5525 28 1 2.6333 0.4566 2.5568 29 1 3.9018 0.0058 1.3924 30 1 4.5103 3.0098 2.5920 31 1 3.8118 5.7291 1.5945 32 1 6.6362 4.4409 1.5791 33 1 6.0332 5.8221 0.5619 34 1 8.5986 7.4602 0.2361 35 1 4.3649 6.1350 3.9479 36 1 5.4346 4.6663 4.0181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714937998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:58 Heat of formation + Delta-G solvation = 24.448197 kcal Electronic energy + Delta-G solvation = -16607.284915 eV Core-core repulsion = 13900.435289 eV Total energy + Delta-G solvation = -2706.849626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66553 -37.67290 -35.98644 -33.60307 -32.12927 -31.34596 -27.49991 -27.01677 -24.81477 -24.56871 -22.89363 -20.90663 -19.67630 -18.20519 -16.88194 -16.76920 -15.96677 -15.01667 -14.84548 -14.43390 -14.18413 -13.81212 -13.76663 -13.13457 -12.68253 -12.63014 -12.39358 -11.96629 -11.81353 -11.45286 -11.39895 -11.38330 -11.02947 -10.88489 -10.75994 -10.41175 -10.03543 -9.55731 -9.45279 -9.05068 -8.80117 -8.36769 -6.91158 -5.76342 -3.10501 1.45991 3.39625 3.43824 3.47208 3.55567 3.57881 4.46194 4.68980 4.81491 4.95657 5.07860 5.09910 5.16992 5.37998 5.47731 5.48648 5.49743 5.61348 5.66970 5.78061 5.84519 5.95450 6.05005 6.23277 6.42314 6.44360 6.51570 6.60055 6.80603 7.25143 7.39117 7.57661 7.94729 7.97805 8.61755 9.03458 9.69856 10.56749 11.40351 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064627 B = 0.004253 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.154667 B = 6581.438881 C = 6697.157627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.081 4.081 4 C -0.182 4.182 5 C -0.115 4.115 6 C 0.548 3.452 7 O -0.548 6.548 8 N -0.711 5.711 9 C 0.091 3.909 10 C 0.154 3.846 11 N -0.607 5.607 12 C -0.226 4.226 13 H 0.082 0.918 14 C -0.007 4.007 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.289 1.289 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.112 3.888 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.396 0.604 31 H 0.110 0.890 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 -15.449 1.397 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.101 4.101 4 C -0.185 4.185 5 C -0.171 4.171 6 C 0.335 3.665 7 O -0.427 6.427 8 N -0.362 5.362 9 C -0.014 4.014 10 C 0.028 3.972 11 N -0.334 5.334 12 C -0.353 4.353 13 H 0.100 0.900 14 C -0.204 4.204 15 N -0.565 5.565 16 Si 0.745 3.255 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.014 4.014 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.144 0.856 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.128 0.872 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.425 -14.588 0.784 18.546 hybrid contribution 1.005 0.446 0.515 1.215 sum -10.420 -14.142 1.299 17.614 Atomic orbital electron populations 1.21692 0.94629 1.01732 1.02409 1.20801 0.96441 0.93871 1.03095 1.23534 0.93374 0.97121 0.96061 1.21548 1.02243 0.94081 1.00633 1.20798 1.00729 0.97846 0.97771 1.18375 0.78859 0.88107 0.81110 1.90774 1.55821 1.55401 1.40740 1.46136 1.45530 1.11390 1.33172 1.23893 0.98483 0.80230 0.98790 1.22712 0.88540 0.91654 0.94312 1.45722 1.42579 1.29843 1.15244 1.18988 1.13048 1.02295 1.01011 0.90045 1.24826 0.99537 0.99579 0.96420 1.69838 1.37787 1.41667 1.07191 0.86084 0.80349 0.81979 0.77109 1.21586 1.21561 1.20538 1.22867 0.90852 0.94434 0.93297 0.92471 0.92361 0.92370 0.90392 0.90651 0.85640 0.91793 0.91103 0.91042 0.76854 0.87196 0.95382 0.90492 0.93535 0.93230 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.11 -0.85 6.15 -27.88 -0.17 -1.02 16 3 C -0.08 -0.93 9.08 -36.13 -0.33 -1.26 16 4 C -0.18 -2.31 5.99 -102.85 -0.62 -2.92 16 5 C -0.11 -1.05 8.51 36.01 0.31 -0.74 16 6 C 0.55 9.35 7.75 -12.67 -0.10 9.25 16 7 O -0.55 -11.59 15.85 5.26 0.08 -11.51 16 8 N -0.71 -11.71 5.33 -56.53 -0.30 -12.01 16 9 C 0.09 1.85 4.40 -70.15 -0.31 1.54 16 10 C 0.15 3.81 7.33 -2.84 -0.02 3.79 16 11 N -0.61 -15.95 3.70 -177.89 -0.66 -16.61 16 12 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 13 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.92 -27.91 11.39 55.49 0.63 -27.28 16 16 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.11 2.31 8.69 -2.97 -0.03 2.28 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.53 5.94 -51.93 -0.31 0.23 16 26 H 0.13 1.62 7.50 -52.49 -0.39 1.23 16 27 H 0.06 0.57 5.87 -51.93 -0.30 0.26 16 28 H 0.07 0.54 7.72 -51.93 -0.40 0.14 16 29 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 30 H 0.40 5.33 6.45 -40.82 -0.26 5.06 16 31 H 0.11 2.43 7.50 -51.93 -0.39 2.04 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 2.16 7.16 -51.93 -0.37 1.79 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -33.56 300.24 -7.24 -40.80 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.34 Total: 1.36 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.15 Total: 3.32 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.33 Total: -55.90 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.56 -7.24 -40.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714937998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.247 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds