Wall clock time and date at job start Sun Mar 29 2020 22:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47010 * 2 1 4 4 C 1.32993 * 119.99972 * 125.41769 * 3 2 1 5 5 C 1.50701 * 120.00075 * 5.40870 * 4 3 2 6 6 C 1.47098 * 119.99816 * 185.14329 * 4 3 2 7 7 O 1.21615 * 120.00179 * 0.26688 * 6 4 3 8 8 N 1.34778 * 120.00096 * 180.27317 * 6 4 3 9 9 C 1.46504 * 120.00302 * 179.97438 * 8 6 4 10 10 C 1.53943 * 113.74041 * 253.74384 * 9 8 6 11 11 N 1.47819 * 86.03438 * 222.08379 * 10 9 8 12 12 C 1.36934 * 134.45593 * 204.64941 * 11 10 9 13 13 H 1.08001 * 119.99919 * 179.86233 * 12 11 10 14 14 C 1.38811 * 120.00316 * 359.85888 * 12 11 10 15 15 N 1.31621 * 119.99764 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00417 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47399 * 89.99911 * 16 14 12 18 18 H 1.48499 * 109.47540 * 209.99861 * 16 14 12 19 19 H 1.48504 * 109.47153 * 330.00204 * 16 14 12 20 20 C 1.47579 * 91.05144 * 24.54607 * 11 10 9 21 21 H 1.09002 * 109.47523 * 299.99901 * 1 2 3 22 22 H 1.08994 * 109.47365 * 59.99941 * 1 2 3 23 23 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46873 * 239.99780 * 2 1 3 25 25 H 1.09006 * 109.46963 * 119.99954 * 2 1 3 26 26 H 1.07999 * 119.99648 * 305.41100 * 3 2 1 27 27 H 1.08997 * 109.47067 * 174.52020 * 5 4 3 28 28 H 1.08999 * 109.47060 * 294.51603 * 5 4 3 29 29 H 1.08995 * 109.46702 * 54.51995 * 5 4 3 30 30 H 0.97000 * 119.99849 * 359.97438 * 8 6 4 31 31 H 1.08998 * 112.94159 * 25.32945 * 9 8 6 32 32 H 1.09001 * 113.77094 * 336.33805 * 10 9 8 33 33 H 1.08995 * 113.77811 * 107.74556 * 10 9 8 34 34 H 0.97007 * 119.99957 * 180.02562 * 15 14 12 35 35 H 1.09002 * 113.77367 * 221.15492 * 20 11 10 36 36 H 1.08999 * 113.76644 * 89.75720 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8832 1.8253 0.9386 5 6 3.4398 0.8346 1.9286 6 6 3.2857 3.2385 1.0069 7 8 2.8365 4.0379 0.2080 8 7 4.1523 3.6474 1.9546 9 6 4.5536 5.0548 2.0223 10 6 5.9872 5.3150 1.5256 11 7 6.1143 6.2230 2.6850 12 6 6.8962 7.3104 2.9704 13 1 6.7917 7.8167 3.9186 14 6 7.8233 7.7618 2.0411 15 7 7.9504 7.1450 0.8854 16 14 8.8904 9.2446 2.4307 17 1 10.1421 8.7941 3.0908 18 1 9.2240 9.9589 1.1722 19 1 8.1536 10.1598 3.3390 20 6 5.0590 5.4892 3.4100 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7013 2.1105 -0.7623 27 1 4.1868 1.3252 2.5525 28 1 2.6333 0.4566 2.5568 29 1 3.9018 0.0058 1.3924 30 1 4.5103 3.0098 2.5920 31 1 3.8118 5.7291 1.5945 32 1 6.6362 4.4409 1.5791 33 1 6.0332 5.8221 0.5619 34 1 8.5986 7.4602 0.2361 35 1 4.3649 6.1350 3.9479 36 1 5.4346 4.6663 4.0181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714937998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:58 Heat of formation + Delta-G solvation = 1.376660 kcal Electronic energy + Delta-G solvation = -16608.285372 eV Core-core repulsion = 13900.435289 eV Total energy + Delta-G solvation = -2707.850083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11841 -39.35812 -36.95860 -35.23873 -33.88646 -32.39823 -29.44907 -27.81540 -26.65872 -25.89672 -24.36427 -22.14967 -21.40971 -19.36826 -18.80358 -17.97770 -17.50093 -16.98137 -16.07905 -15.78147 -15.70261 -14.97901 -14.86363 -14.59848 -13.85778 -13.71003 -13.49759 -13.28999 -13.22781 -12.98975 -12.83381 -12.68678 -12.59867 -12.29593 -12.16636 -11.96610 -11.68071 -11.55654 -10.91076 -10.87073 -10.12922 -9.79981 -9.00295 -7.93667 -5.29736 0.41078 1.44600 1.47723 1.56520 2.17969 2.28215 2.49636 3.22995 3.37329 3.76461 3.82302 3.99579 4.19762 4.29282 4.31399 4.47254 4.48674 4.70879 4.74164 4.79975 4.87360 4.88263 5.09044 5.12453 5.15034 5.18703 5.20988 5.37547 5.44789 5.56753 5.62438 5.72881 5.86607 6.62489 6.85576 7.28052 7.55837 8.48700 9.23207 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064627 B = 0.004253 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.154667 B = 6581.438881 C = 6697.157627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.069 4.069 4 C -0.197 4.197 5 C -0.110 4.110 6 C 0.541 3.459 7 O -0.599 6.599 8 N -0.698 5.698 9 C 0.117 3.883 10 C 0.152 3.848 11 N -0.638 5.638 12 C -0.237 4.237 13 H 0.092 0.908 14 C -0.071 4.071 15 N -0.956 5.956 16 Si 0.986 3.014 17 H -0.283 1.283 18 H -0.296 1.296 19 H -0.265 1.265 20 C 0.124 3.876 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.414 0.586 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.249 0.751 35 H 0.066 0.934 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 -17.312 3.176 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.089 4.089 4 C -0.200 4.200 5 C -0.166 4.166 6 C 0.331 3.669 7 O -0.482 6.482 8 N -0.351 5.351 9 C 0.010 3.990 10 C 0.025 3.975 11 N -0.366 5.366 12 C -0.365 4.365 13 H 0.110 0.890 14 C -0.263 4.263 15 N -0.605 5.605 16 Si 0.813 3.187 17 H -0.210 1.210 18 H -0.223 1.223 19 H -0.189 1.189 20 C -0.002 4.002 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.069 -16.501 2.623 20.611 hybrid contribution 1.103 0.973 -0.083 1.473 sum -10.966 -15.527 2.539 19.178 Atomic orbital electron populations 1.21707 0.93993 1.02886 1.01910 1.20877 0.96821 0.91297 1.04675 1.23780 0.91936 0.98768 0.94445 1.21528 1.03609 0.92002 1.02837 1.20856 1.01408 0.97191 0.97167 1.19190 0.77913 0.89844 0.79930 1.90750 1.57604 1.57251 1.42558 1.45881 1.45438 1.10015 1.33718 1.23179 0.95364 0.82216 0.98212 1.22589 0.91502 0.91018 0.92356 1.46049 1.43471 1.30164 1.16878 1.19462 1.12821 1.03023 1.01192 0.89032 1.25761 1.01393 1.02810 0.96381 1.70055 1.38626 1.43515 1.08275 0.84976 0.78537 0.78508 0.76669 1.20954 1.22285 1.18922 1.23006 0.89202 0.94791 0.93179 0.92989 0.92964 0.90366 0.88985 0.88733 0.87997 0.91615 0.88938 0.89358 0.74661 0.89344 0.95560 0.95005 0.94260 0.91613 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.89 71.98 0.71 -1.07 16 2 C -0.10 -1.31 6.15 29.85 0.18 -1.13 16 3 C -0.07 -1.51 9.08 24.52 0.22 -1.28 16 4 C -0.20 -4.69 5.99 -18.70 -0.11 -4.80 16 5 C -0.11 -1.63 8.51 71.24 0.61 -1.02 16 6 C 0.54 18.44 7.75 86.57 0.67 19.11 16 7 O -0.60 -26.27 15.85 -4.08 -0.06 -26.33 16 8 N -0.70 -22.44 5.33 -451.01 -2.41 -24.84 16 9 C 0.12 4.78 4.40 46.75 0.21 4.99 16 10 C 0.15 7.75 7.33 86.44 0.63 8.39 16 11 N -0.64 -33.68 3.70 -716.72 -2.65 -36.34 16 12 C -0.24 -13.55 10.70 84.03 0.90 -12.65 16 13 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 14 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 15 N -0.96 -60.06 11.39 21.65 0.25 -59.81 16 16 Si 0.99 46.58 29.55 68.60 2.03 48.61 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.12 4.87 8.69 86.49 0.75 5.63 16 21 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.09 0.93 5.94 -2.38 -0.01 0.92 16 26 H 0.10 2.69 7.50 -2.91 -0.02 2.67 16 27 H 0.06 0.94 5.87 -2.39 -0.01 0.93 16 28 H 0.09 1.00 7.72 -2.39 -0.02 0.98 16 29 H 0.09 1.04 7.85 -2.39 -0.02 1.02 16 30 H 0.41 10.24 6.45 -92.71 -0.60 9.64 16 31 H 0.09 4.05 7.50 -2.39 -0.02 4.03 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.03 1.89 7.16 -2.39 -0.02 1.87 16 34 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 Total: -1.00 -75.58 300.24 2.86 -72.72 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.47 Total: 13.51 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.24 Total: 12.48 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -4.81 Total: -120.99 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -75.58 2.86 -72.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714937998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.097 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds