Wall clock time and date at job start Sun Mar 29 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32994 * 119.99548 * 2 1 4 4 C 1.50704 * 119.99548 * 180.02562 * 3 2 1 5 5 C 1.47100 * 120.00300 * 359.97438 * 3 2 1 6 6 O 1.21609 * 120.00060 * 0.02562 * 5 3 2 7 7 N 1.34779 * 119.99888 * 180.02562 * 5 3 2 8 8 C 1.46501 * 119.99823 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74237 * 86.25986 * 9 8 7 11 11 N 1.47805 * 86.03824 * 90.88049 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47017 * 89.99413 * 16 14 12 18 18 H 1.48498 * 109.47093 * 210.00245 * 16 14 12 19 19 H 1.48508 * 109.46865 * 329.99904 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08998 * 109.47486 * 59.99795 * 1 2 3 22 22 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47130 * 299.99961 * 1 2 3 24 24 H 1.07996 * 120.00077 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47483 * 269.99813 * 4 3 2 26 26 H 1.08997 * 109.47127 * 30.00062 * 4 3 2 27 27 H 1.09002 * 109.46999 * 149.99728 * 4 3 2 28 28 H 0.97000 * 120.00410 * 0.02562 * 7 5 3 29 29 H 1.08998 * 109.47568 * 60.00247 * 8 7 5 30 30 H 1.08998 * 109.47248 * 299.99470 * 8 7 5 31 31 H 1.09002 * 112.94408 * 314.66403 * 9 8 7 32 32 H 1.08999 * 113.76704 * 205.14826 * 10 9 8 33 33 H 1.09002 * 113.76463 * 336.53620 * 10 9 8 34 34 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 36 36 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.2203 2.4257 -0.0006 7 7 2.1103 3.5929 -0.0011 8 6 1.3777 4.8617 -0.0011 9 6 2.3720 6.0246 -0.0024 10 6 2.8436 6.4354 -1.4091 11 7 1.7070 7.3803 -1.4025 12 6 0.9558 7.9838 -2.3755 13 1 0.1540 8.6533 -2.1011 14 6 1.2249 7.7350 -3.7143 15 7 2.2017 6.9187 -4.0486 16 14 0.2007 8.5589 -5.0416 17 1 0.8228 9.8549 -5.4139 18 1 0.1377 7.6787 -6.2360 19 1 -1.1728 8.7980 -4.5300 20 6 1.7052 7.4102 0.0730 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 2.0470 -0.9353 -0.0004 25 1 4.0428 1.1516 1.0269 26 1 4.0421 0.2620 -0.5147 27 1 4.0421 2.0419 -0.5144 28 1 3.0803 3.5930 -0.0015 29 1 0.7514 4.9197 0.8891 30 1 0.7508 4.9192 -0.8909 31 1 3.1850 5.8894 0.7110 32 1 3.8191 6.9215 -1.4209 33 1 2.7531 5.6425 -2.1517 34 1 2.3900 6.7451 -4.9842 35 1 0.7075 7.3943 0.5116 36 1 2.3457 8.1833 0.4975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714963969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:38 Heat of formation + Delta-G solvation = 27.527701 kcal Electronic energy + Delta-G solvation = -16963.035052 eV Core-core repulsion = 14256.318963 eV Total energy + Delta-G solvation = -2706.716089 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70472 -38.05459 -34.94157 -34.27390 -32.14078 -30.16378 -28.39221 -26.03502 -24.84340 -24.69229 -22.64207 -21.52814 -19.51494 -18.12470 -16.75927 -16.04638 -15.78054 -15.18420 -14.76310 -14.24149 -14.16079 -13.70918 -13.47266 -12.96528 -12.77444 -12.54084 -12.49932 -12.20450 -11.91726 -11.45576 -11.40096 -11.07959 -10.97811 -10.66708 -10.48040 -9.87850 -9.72168 -9.44418 -9.26367 -9.07614 -8.76486 -8.51285 -6.84419 -5.73226 -3.05005 1.49875 3.42104 3.47035 3.49063 3.50599 3.58104 4.49492 4.80931 4.89079 5.20952 5.22968 5.35886 5.38391 5.45436 5.52132 5.65058 5.67592 5.86581 5.93459 6.02120 6.13626 6.19549 6.35981 6.48993 6.53137 6.62845 6.66445 6.74350 6.89027 7.21737 7.34160 7.59557 7.89009 8.01865 8.56685 9.08362 9.74892 10.63533 11.44019 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.005702 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.806558 B = 4909.279651 C = 5247.541045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.191 4.191 4 C -0.115 4.115 5 C 0.545 3.455 6 O -0.542 6.542 7 N -0.719 5.719 8 C 0.149 3.851 9 C -0.156 4.156 10 C 0.166 3.834 11 N -0.611 5.611 12 C -0.222 4.222 13 H 0.079 0.921 14 C -0.008 4.008 15 N -0.922 5.922 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.127 3.873 21 H 0.081 0.919 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.397 0.603 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.045 0.955 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -11.774 9.754 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.172 4.172 5 C 0.333 3.667 6 O -0.422 6.422 7 N -0.370 5.370 8 C 0.026 3.974 9 C -0.175 4.175 10 C 0.040 3.960 11 N -0.338 5.338 12 C -0.349 4.349 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.741 3.259 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.000 4.000 21 H 0.100 0.900 22 H 0.066 0.934 23 H 0.098 0.902 24 H 0.139 0.861 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.232 0.768 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.506 -11.662 9.417 15.197 hybrid contribution 0.220 0.639 -0.840 1.078 sum 2.726 -11.023 8.576 14.230 Atomic orbital electron populations 1.21006 0.91824 1.00526 1.04319 1.23559 0.97205 0.96493 0.92534 1.21543 0.96355 0.93462 1.08088 1.20776 0.91081 1.03100 1.02244 1.18353 0.87302 0.84108 0.76910 1.90770 1.13602 1.87625 1.50210 1.45991 1.10361 1.06036 1.74579 1.21051 0.93846 0.80200 1.02324 1.23452 0.98087 0.95152 1.00844 1.22351 0.90052 0.92629 0.90952 1.46043 1.35153 1.53209 0.99353 1.19032 1.09330 1.21334 0.85253 0.90308 1.24755 0.98720 1.00137 0.96818 1.69806 1.31842 1.39082 1.16216 0.86141 0.79597 0.78549 0.81637 1.21685 1.21665 1.20596 1.22520 0.97617 0.92471 0.87364 0.90011 0.93385 0.90250 0.86149 0.91238 0.91342 0.91362 0.76778 0.92381 0.90045 0.91639 0.95619 0.90698 0.93740 0.93652 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.45 36.01 0.30 -1.20 16 2 C -0.08 -0.89 9.95 -36.12 -0.36 -1.25 16 3 C -0.19 -2.43 6.00 -102.84 -0.62 -3.04 16 4 C -0.12 -1.08 9.61 36.01 0.35 -0.73 16 5 C 0.54 8.97 7.72 -12.66 -0.10 8.87 16 6 O -0.54 -10.65 13.07 5.27 0.07 -10.58 16 7 N -0.72 -11.32 5.50 -61.49 -0.34 -11.66 16 8 C 0.15 2.73 5.42 -4.04 -0.02 2.71 16 9 C -0.16 -2.83 3.99 -89.69 -0.36 -3.19 16 10 C 0.17 3.83 7.03 -2.84 -0.02 3.81 16 11 N -0.61 -15.71 3.59 -177.69 -0.64 -16.35 16 12 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 13 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 15 N -0.92 -27.67 11.39 55.49 0.63 -27.03 16 16 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.13 2.58 8.51 -2.96 -0.03 2.55 16 21 H 0.08 1.20 7.22 -51.93 -0.37 0.83 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 1.10 7.22 -51.93 -0.37 0.72 16 24 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 27 H 0.07 0.65 6.70 -51.93 -0.35 0.30 16 28 H 0.40 5.22 6.57 -40.82 -0.27 4.95 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.85 7.98 -51.93 -0.41 1.44 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.93 7.12 -51.93 -0.37 1.56 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -32.85 299.33 -7.39 -40.24 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.49 Total: 1.55 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.11 Total: 1.71 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.34 Total: -55.04 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.85 -7.39 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714963969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.766 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds