Wall clock time and date at job start Sun Mar 29 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32994 * 119.99548 * 2 1 4 4 C 1.50704 * 119.99548 * 180.02562 * 3 2 1 5 5 C 1.47100 * 120.00300 * 359.97438 * 3 2 1 6 6 O 1.21609 * 120.00060 * 0.02562 * 5 3 2 7 7 N 1.34779 * 119.99888 * 180.02562 * 5 3 2 8 8 C 1.46501 * 119.99823 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74237 * 86.25986 * 9 8 7 11 11 N 1.47805 * 86.03824 * 90.88049 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47017 * 89.99413 * 16 14 12 18 18 H 1.48498 * 109.47093 * 210.00245 * 16 14 12 19 19 H 1.48508 * 109.46865 * 329.99904 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08998 * 109.47486 * 59.99795 * 1 2 3 22 22 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47130 * 299.99961 * 1 2 3 24 24 H 1.07996 * 120.00077 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47483 * 269.99813 * 4 3 2 26 26 H 1.08997 * 109.47127 * 30.00062 * 4 3 2 27 27 H 1.09002 * 109.46999 * 149.99728 * 4 3 2 28 28 H 0.97000 * 120.00410 * 0.02562 * 7 5 3 29 29 H 1.08998 * 109.47568 * 60.00247 * 8 7 5 30 30 H 1.08998 * 109.47248 * 299.99470 * 8 7 5 31 31 H 1.09002 * 112.94408 * 314.66403 * 9 8 7 32 32 H 1.08999 * 113.76704 * 205.14826 * 10 9 8 33 33 H 1.09002 * 113.76463 * 336.53620 * 10 9 8 34 34 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 36 36 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.2203 2.4257 -0.0006 7 7 2.1103 3.5929 -0.0011 8 6 1.3777 4.8617 -0.0011 9 6 2.3720 6.0246 -0.0024 10 6 2.8436 6.4354 -1.4091 11 7 1.7070 7.3803 -1.4025 12 6 0.9558 7.9838 -2.3755 13 1 0.1540 8.6533 -2.1011 14 6 1.2249 7.7350 -3.7143 15 7 2.2017 6.9187 -4.0486 16 14 0.2007 8.5589 -5.0416 17 1 0.8228 9.8549 -5.4139 18 1 0.1377 7.6787 -6.2360 19 1 -1.1728 8.7980 -4.5300 20 6 1.7052 7.4102 0.0730 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 2.0470 -0.9353 -0.0004 25 1 4.0428 1.1516 1.0269 26 1 4.0421 0.2620 -0.5147 27 1 4.0421 2.0419 -0.5144 28 1 3.0803 3.5930 -0.0015 29 1 0.7514 4.9197 0.8891 30 1 0.7508 4.9192 -0.8909 31 1 3.1850 5.8894 0.7110 32 1 3.8191 6.9215 -1.4209 33 1 2.7531 5.6425 -2.1517 34 1 2.3900 6.7451 -4.9842 35 1 0.7075 7.3943 0.5116 36 1 2.3457 8.1833 0.4975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714963969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:38 Heat of formation + Delta-G solvation = 5.107766 kcal Electronic energy + Delta-G solvation = -16964.007253 eV Core-core repulsion = 14256.318963 eV Total energy + Delta-G solvation = -2707.688290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02437 -39.72786 -36.02253 -35.67690 -34.18657 -31.25595 -30.07691 -27.71964 -26.54007 -25.72320 -24.39193 -22.84660 -20.97235 -19.60815 -18.72785 -17.31819 -17.10085 -16.95374 -16.36669 -15.76095 -15.55965 -15.07493 -14.78078 -14.41781 -14.20789 -13.71344 -13.59058 -13.44572 -13.32252 -12.94317 -12.84648 -12.77329 -12.50497 -12.33659 -12.25487 -11.81839 -11.49474 -11.28606 -10.87956 -10.54287 -10.19385 -9.74852 -8.89492 -7.90695 -5.22201 0.48417 1.42611 1.44768 1.52936 2.27030 2.34815 2.46973 3.30447 3.44392 3.70037 3.86046 3.98480 4.00327 4.40895 4.50918 4.54576 4.63384 4.77383 4.81814 4.86384 4.89170 4.92843 5.01201 5.05472 5.09298 5.25484 5.28974 5.45465 5.54578 5.57374 5.64705 5.71518 5.96298 6.66040 6.93287 7.31547 7.61936 8.57788 9.26254 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.005702 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.806558 B = 4909.279651 C = 5247.541045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.207 4.207 4 C -0.110 4.110 5 C 0.533 3.467 6 O -0.584 6.584 7 N -0.711 5.711 8 C 0.160 3.840 9 C -0.121 4.121 10 C 0.162 3.838 11 N -0.644 5.644 12 C -0.233 4.233 13 H 0.080 0.920 14 C -0.068 4.068 15 N -0.953 5.953 16 Si 0.974 3.026 17 H -0.284 1.284 18 H -0.296 1.296 19 H -0.271 1.271 20 C 0.125 3.875 21 H 0.051 0.949 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.163 0.837 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.412 0.588 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.114 0.886 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.247 0.753 35 H 0.053 0.947 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -12.732 11.170 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.084 4.084 3 C -0.210 4.210 4 C -0.167 4.167 5 C 0.324 3.676 6 O -0.467 6.467 7 N -0.363 5.363 8 C 0.036 3.964 9 C -0.140 4.140 10 C 0.037 3.963 11 N -0.372 5.372 12 C -0.361 4.361 13 H 0.098 0.902 14 C -0.261 4.261 15 N -0.602 5.602 16 Si 0.802 3.198 17 H -0.211 1.211 18 H -0.222 1.222 19 H -0.196 1.196 20 C 0.000 4.000 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.180 0.820 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.250 0.750 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.568 -12.611 10.874 17.030 hybrid contribution -0.153 0.908 -1.221 1.529 sum 3.415 -11.703 9.654 15.551 Atomic orbital electron populations 1.20958 0.93199 1.01629 1.02009 1.23924 0.96464 0.97788 0.90269 1.21658 0.98130 0.91612 1.09627 1.20813 0.88317 1.03877 1.03672 1.19156 0.87155 0.85476 0.75860 1.90753 1.15570 1.88306 1.52080 1.45877 1.11027 1.05112 1.74319 1.20718 0.93744 0.81741 1.00183 1.23154 0.98482 0.93902 0.98447 1.22291 0.89475 0.91443 0.93093 1.46437 1.35676 1.53565 1.01476 1.19415 1.09590 1.20709 0.86406 0.90195 1.25565 1.00279 1.01312 0.98957 1.69988 1.33548 1.40709 1.15967 0.85141 0.78541 0.77447 0.78635 1.21055 1.22227 1.19578 1.22766 0.98804 0.94140 0.84301 0.93017 0.90432 0.92105 0.81963 0.89400 0.89329 0.91848 0.75047 0.91486 0.95282 0.86843 0.95805 0.94186 0.94442 0.92865 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 8.45 71.24 0.60 -2.35 16 2 C -0.07 -1.33 9.95 24.52 0.24 -1.08 16 3 C -0.21 -4.88 6.00 -18.70 -0.11 -5.00 16 4 C -0.11 -1.72 9.61 71.24 0.68 -1.04 16 5 C 0.53 17.52 7.72 86.57 0.67 18.19 16 6 O -0.58 -23.75 13.07 -4.06 -0.05 -23.80 16 7 N -0.71 -22.00 5.50 -466.71 -2.57 -24.57 16 8 C 0.16 5.88 5.42 86.38 0.47 6.34 16 9 C -0.12 -4.19 3.99 -10.13 -0.04 -4.23 16 10 C 0.16 7.54 7.03 86.44 0.61 8.15 16 11 N -0.64 -33.36 3.59 -716.10 -2.57 -35.93 16 12 C -0.23 -13.46 10.70 84.03 0.90 -12.56 16 13 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 14 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 15 N -0.95 -58.86 11.39 21.65 0.25 -58.62 16 16 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 17 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.12 4.88 8.51 86.49 0.74 5.61 16 21 H 0.05 1.58 7.22 -2.39 -0.02 1.56 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.70 7.22 -2.38 -0.02 1.69 16 24 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 27 H 0.06 1.05 6.70 -2.39 -0.02 1.03 16 28 H 0.41 10.16 6.57 -92.71 -0.61 9.55 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16 31 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 34 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 35 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -74.55 299.33 2.76 -71.79 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.45 Total: 13.21 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.22 Total: 8.50 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.89 Total: -119.11 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -74.55 2.76 -71.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714963969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.895 kcal (2) G-P(sol) polarization free energy of solvation -74.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds