Wall clock time and date at job start Sun Mar 29 2020 22:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47008 * 2 1 4 4 O 1.21288 * 119.99737 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00183 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00062 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46943 * 180.02562 * 6 5 3 8 8 C 1.29459 * 117.69855 * 94.99994 * 7 6 5 9 9 C 1.50316 * 123.65508 * 181.13441 * 8 7 6 10 10 N 1.47112 * 109.10903 * 348.54409 * 9 8 7 11 11 C 1.36938 * 121.51017 * 223.15910 * 10 9 8 12 12 H 1.07995 * 119.99619 * 156.18843 * 11 10 9 13 13 C 1.38811 * 120.00085 * 336.18389 * 11 10 9 14 14 N 1.31620 * 119.99972 * 344.47639 * 13 11 10 15 15 Si 1.86793 * 120.00126 * 164.48385 * 13 11 10 16 16 H 1.48499 * 109.47570 * 89.99770 * 15 13 11 17 17 H 1.48500 * 109.47362 * 209.99960 * 15 13 11 18 18 H 1.48506 * 109.46962 * 329.99743 * 15 13 11 19 19 C 1.47337 * 117.11209 * 43.34223 * 10 9 8 20 20 C 1.49969 * 117.69430 * 274.97585 * 7 6 5 21 21 H 1.09002 * 109.46966 * 60.00303 * 1 2 3 22 22 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47177 * 300.00557 * 1 2 3 24 24 H 1.08998 * 109.47442 * 240.00178 * 2 1 3 25 25 H 1.08993 * 109.47408 * 119.99285 * 2 1 3 26 26 H 0.97001 * 120.00055 * 0.02562 * 5 3 2 27 27 H 1.08998 * 109.46850 * 60.00101 * 6 5 3 28 28 H 1.08996 * 109.46793 * 299.99587 * 6 5 3 29 29 H 1.08004 * 118.16890 * 0.85747 * 8 7 6 30 30 H 1.09007 * 109.52102 * 108.65128 * 9 8 7 31 31 H 1.08999 * 109.52662 * 228.83517 * 9 8 7 32 32 H 0.97000 * 119.99856 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.77655 * 178.43578 * 19 10 9 34 34 H 1.08997 * 109.77795 * 57.62591 * 19 10 9 35 35 H 1.09000 * 109.31763 * 281.28924 * 20 7 6 36 36 H 1.09005 * 109.31493 * 40.72379 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0485 0.0000 7 6 5.3526 3.0485 0.0001 8 6 5.9544 3.1479 -1.1418 9 6 7.4493 3.1368 -1.2993 10 7 8.0742 3.2756 0.0252 11 6 9.1464 4.1030 0.2275 12 1 9.3500 4.4914 1.2144 13 6 9.9717 4.4423 -0.8358 14 7 9.9226 3.7497 -1.9540 15 14 11.1519 5.8817 -0.6798 16 1 12.4520 5.4005 -0.1475 17 1 11.3611 6.4973 -2.0149 18 1 10.5809 6.8918 0.2470 19 6 7.4990 2.4823 1.1255 20 6 6.0495 2.9339 1.3231 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.9877 0.9300 0.0005 27 1 3.4818 3.5628 0.8895 28 1 3.4828 3.5617 -0.8905 29 1 5.3486 3.2396 -2.0312 30 1 7.7604 2.1972 -1.7561 31 1 7.7551 3.9695 -1.9327 32 1 10.4990 3.9870 -2.6971 33 1 8.0668 2.6540 2.0400 34 1 7.5236 1.4233 0.8686 35 1 6.0387 3.9033 1.8214 36 1 5.5267 2.2065 1.9441 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718013671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:55 Heat of formation + Delta-G solvation = -11.522068 kcal Electronic energy + Delta-G solvation = -16795.812850 eV Core-core repulsion = 14087.403436 eV Total energy + Delta-G solvation = -2708.409414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68161 -37.78391 -34.95707 -33.07010 -32.63981 -30.85837 -29.74387 -27.16264 -24.85209 -23.40981 -22.70208 -21.09531 -20.27288 -17.74417 -17.23264 -15.96037 -15.79570 -15.56458 -15.05020 -14.20762 -14.03849 -13.78684 -13.45443 -13.38281 -12.80311 -12.46362 -12.25715 -12.02926 -11.87811 -11.58242 -11.38725 -11.28008 -10.93711 -10.74409 -10.42538 -10.34112 -9.87857 -9.85210 -9.60957 -8.94408 -8.70557 -8.08075 -6.78012 -5.82765 -3.21395 2.59521 2.69426 3.36349 3.43448 3.45928 3.58515 4.47213 4.71972 4.95356 4.95613 5.14305 5.33575 5.38040 5.42176 5.56361 5.63670 5.77413 5.82573 5.94457 6.04903 6.06108 6.14657 6.30913 6.45278 6.54431 6.70702 6.83710 7.13627 7.23018 7.29933 7.61455 7.70286 7.79542 8.29219 8.34840 9.16266 9.79076 10.37212 11.27783 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.061577 B = 0.004493 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.603042 B = 6231.018174 C = 6287.704941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.506 3.494 4 O -0.550 6.550 5 N -0.722 5.722 6 C 0.156 3.844 7 C -0.166 4.166 8 C -0.125 4.125 9 C 0.193 3.807 10 N -0.595 5.595 11 C -0.247 4.247 12 H 0.069 0.931 13 C -0.001 4.001 14 N -0.910 5.910 15 Si 0.905 3.095 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.143 3.857 20 C -0.090 4.090 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.402 0.598 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.254 0.746 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 -7.448 3.157 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.292 3.708 4 O -0.428 6.428 5 N -0.374 5.374 6 C 0.034 3.966 7 C -0.167 4.167 8 C -0.145 4.145 9 C 0.069 3.931 10 N -0.318 5.318 11 C -0.376 4.376 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.555 5.555 15 Si 0.735 3.265 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.017 3.983 20 C -0.129 4.129 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.236 0.764 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.914 -6.720 3.017 14.867 hybrid contribution 0.963 0.407 -0.088 1.050 sum -11.950 -6.313 2.929 13.829 Atomic orbital electron populations 1.21514 0.93214 1.01338 1.03288 1.21637 0.98512 0.94090 1.04297 1.20810 0.82297 0.91743 0.75922 1.90686 1.55429 1.46678 1.49984 1.46251 1.06815 1.09495 1.74806 1.20440 0.92182 0.82295 1.01726 1.20503 0.92476 1.07503 0.96220 1.23282 1.00094 0.95059 0.96114 1.19779 0.83918 1.01205 0.88244 1.44157 1.34061 1.49077 1.04543 1.19177 1.02543 1.20305 0.95579 0.91342 1.24984 0.97927 0.99616 0.97368 1.70004 1.41279 1.39214 1.05010 0.86254 0.80845 0.82494 0.76952 1.21421 1.21544 1.20512 1.20958 0.91221 0.93619 0.92525 1.20755 0.97768 1.00761 0.93613 0.92061 0.92249 0.92079 0.88996 0.89018 0.76426 0.91717 0.91792 0.88812 0.94099 0.88848 0.93590 0.92443 0.95940 0.91760 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 37.16 0.34 -0.89 16 2 C -0.15 -1.30 6.42 -27.88 -0.18 -1.48 16 3 C 0.51 6.70 7.83 -10.98 -0.09 6.62 16 4 O -0.55 -9.49 15.98 5.55 0.09 -9.40 16 5 N -0.72 -9.29 5.55 -61.47 -0.34 -9.63 16 6 C 0.16 2.37 5.66 -5.19 -0.03 2.34 16 7 C -0.17 -2.83 5.22 -100.99 -0.53 -3.36 16 8 C -0.12 -2.35 9.47 -35.78 -0.34 -2.69 16 9 C 0.19 4.51 5.25 -5.05 -0.03 4.49 16 10 N -0.60 -14.69 3.01 -173.59 -0.52 -15.22 16 11 C -0.25 -6.71 9.71 -15.06 -0.15 -6.85 16 12 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 13 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 14 N -0.91 -25.93 11.07 55.49 0.61 -25.31 16 15 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 C 0.14 2.90 6.57 -3.53 -0.02 2.88 16 20 C -0.09 -1.54 5.95 -28.18 -0.17 -1.71 16 21 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.40 4.41 8.46 -40.82 -0.35 4.06 16 27 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 29 H 0.09 1.60 7.73 -52.48 -0.41 1.19 16 30 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.09 2.44 6.40 -51.93 -0.33 2.11 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 298.63 15.07 4.50 4.50 Total: -1.00 -30.90 298.63 -7.63 -38.53 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.67 Total: 0.79 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.27 Total: -0.78 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.25 Total: -50.16 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.90 -7.63 -38.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718013671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.011 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds