Wall clock time and date at job start Sun Mar 29 2020 22:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47008 * 2 1 4 4 O 1.21288 * 119.99737 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00183 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00062 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46943 * 180.02562 * 6 5 3 8 8 C 1.29459 * 117.69855 * 94.99994 * 7 6 5 9 9 C 1.50316 * 123.65508 * 181.13441 * 8 7 6 10 10 N 1.47112 * 109.10903 * 348.54409 * 9 8 7 11 11 C 1.36938 * 121.51017 * 223.15910 * 10 9 8 12 12 H 1.07995 * 119.99619 * 156.18843 * 11 10 9 13 13 C 1.38811 * 120.00085 * 336.18389 * 11 10 9 14 14 N 1.31620 * 119.99972 * 344.47639 * 13 11 10 15 15 Si 1.86793 * 120.00126 * 164.48385 * 13 11 10 16 16 H 1.48499 * 109.47570 * 89.99770 * 15 13 11 17 17 H 1.48500 * 109.47362 * 209.99960 * 15 13 11 18 18 H 1.48506 * 109.46962 * 329.99743 * 15 13 11 19 19 C 1.47337 * 117.11209 * 43.34223 * 10 9 8 20 20 C 1.49969 * 117.69430 * 274.97585 * 7 6 5 21 21 H 1.09002 * 109.46966 * 60.00303 * 1 2 3 22 22 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47177 * 300.00557 * 1 2 3 24 24 H 1.08998 * 109.47442 * 240.00178 * 2 1 3 25 25 H 1.08993 * 109.47408 * 119.99285 * 2 1 3 26 26 H 0.97001 * 120.00055 * 0.02562 * 5 3 2 27 27 H 1.08998 * 109.46850 * 60.00101 * 6 5 3 28 28 H 1.08996 * 109.46793 * 299.99587 * 6 5 3 29 29 H 1.08004 * 118.16890 * 0.85747 * 8 7 6 30 30 H 1.09007 * 109.52102 * 108.65128 * 9 8 7 31 31 H 1.08999 * 109.52662 * 228.83517 * 9 8 7 32 32 H 0.97000 * 119.99856 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.77655 * 178.43578 * 19 10 9 34 34 H 1.08997 * 109.77795 * 57.62591 * 19 10 9 35 35 H 1.09000 * 109.31763 * 281.28924 * 20 7 6 36 36 H 1.09005 * 109.31493 * 40.72379 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0485 0.0000 7 6 5.3526 3.0485 0.0001 8 6 5.9544 3.1479 -1.1418 9 6 7.4493 3.1368 -1.2993 10 7 8.0742 3.2756 0.0252 11 6 9.1464 4.1030 0.2275 12 1 9.3500 4.4914 1.2144 13 6 9.9717 4.4423 -0.8358 14 7 9.9226 3.7497 -1.9540 15 14 11.1519 5.8817 -0.6798 16 1 12.4520 5.4005 -0.1475 17 1 11.3611 6.4973 -2.0149 18 1 10.5809 6.8918 0.2470 19 6 7.4990 2.4823 1.1255 20 6 6.0495 2.9339 1.3231 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.9877 0.9300 0.0005 27 1 3.4818 3.5628 0.8895 28 1 3.4828 3.5617 -0.8905 29 1 5.3486 3.2396 -2.0312 30 1 7.7604 2.1972 -1.7561 31 1 7.7551 3.9695 -1.9327 32 1 10.4990 3.9870 -2.6971 33 1 8.0668 2.6540 2.0400 34 1 7.5236 1.4233 0.8686 35 1 6.0387 3.9033 1.8214 36 1 5.5267 2.2065 1.9441 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718013671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:55 Heat of formation + Delta-G solvation = -31.722652 kcal Electronic energy + Delta-G solvation = -16796.688813 eV Core-core repulsion = 14087.403436 eV Total energy + Delta-G solvation = -2709.285377 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79369 -39.33816 -36.42384 -34.53462 -33.64938 -32.51119 -31.42576 -28.70102 -26.33079 -24.71138 -24.19894 -22.75248 -21.29502 -19.50449 -18.37944 -17.35477 -17.12258 -16.84271 -16.63637 -15.74633 -15.49846 -15.21593 -14.94092 -14.71959 -14.16818 -13.91954 -13.55122 -13.30398 -13.13980 -12.88637 -12.77746 -12.60824 -12.58136 -12.24671 -12.10469 -11.99352 -11.71244 -11.28908 -10.95004 -10.68568 -10.07577 -9.65239 -8.75827 -7.89180 -5.30117 1.18948 1.46664 1.48644 1.57827 1.68622 2.50509 2.51211 3.28340 3.61875 3.82011 3.92481 3.96129 4.27376 4.30340 4.43678 4.52529 4.62817 4.72384 4.80741 4.84327 4.91874 5.02683 5.09403 5.10255 5.20633 5.33499 5.38337 5.47310 5.47516 5.60856 5.76329 6.15827 6.33266 6.61118 7.12791 7.29121 7.82799 8.36714 9.19436 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.061577 B = 0.004493 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.603042 B = 6231.018174 C = 6287.704941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.502 3.498 4 O -0.595 6.595 5 N -0.715 5.715 6 C 0.166 3.834 7 C -0.138 4.138 8 C -0.143 4.143 9 C 0.205 3.795 10 N -0.616 5.616 11 C -0.259 4.259 12 H 0.070 0.930 13 C -0.053 4.053 14 N -0.939 5.939 15 Si 0.968 3.032 16 H -0.284 1.284 17 H -0.293 1.293 18 H -0.272 1.272 19 C 0.138 3.862 20 C -0.084 4.084 21 H 0.044 0.956 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.414 0.586 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 -8.420 4.384 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.291 3.709 4 O -0.476 6.476 5 N -0.367 5.367 6 C 0.042 3.958 7 C -0.139 4.139 8 C -0.164 4.164 9 C 0.080 3.920 10 N -0.340 5.340 11 C -0.389 4.389 12 H 0.088 0.912 13 C -0.248 4.248 14 N -0.585 5.585 15 Si 0.796 3.204 16 H -0.210 1.210 17 H -0.220 1.220 18 H -0.197 1.197 19 C 0.013 3.987 20 C -0.122 4.122 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.250 0.750 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.015 -7.727 4.271 16.564 hybrid contribution 1.266 0.656 -0.397 1.480 sum -12.749 -7.071 3.874 15.085 Atomic orbital electron populations 1.21534 0.93469 1.02622 1.01802 1.21704 0.98162 0.91174 1.06649 1.21613 0.81691 0.93156 0.74460 1.90674 1.56433 1.48464 1.51996 1.46125 1.07251 1.08774 1.74526 1.20188 0.90306 0.83814 1.01498 1.20615 0.93588 1.04245 0.95460 1.22944 0.97381 0.98207 0.97822 1.19423 0.86781 0.98542 0.87301 1.44442 1.33972 1.49667 1.05909 1.19516 1.03078 1.20619 0.95678 0.91193 1.25728 0.99882 1.01957 0.97263 1.70161 1.42222 1.40606 1.05558 0.85270 0.78900 0.79644 0.76606 1.21044 1.21957 1.19743 1.21153 0.92885 0.93492 0.91199 1.20695 0.95895 1.01571 0.94087 0.93699 0.89518 0.93503 0.86673 0.86338 0.74978 0.91687 0.92477 0.87105 0.96649 0.92542 0.94111 0.92238 0.95245 0.92008 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.20 71.98 0.66 -1.49 16 2 C -0.14 -1.98 6.42 29.85 0.19 -1.79 16 3 C 0.50 12.08 7.83 87.66 0.69 12.77 16 4 O -0.59 -19.82 15.98 -3.05 -0.05 -19.87 16 5 N -0.71 -16.31 5.55 -466.78 -2.59 -18.90 16 6 C 0.17 4.63 5.66 85.63 0.48 5.12 16 7 C -0.14 -4.43 5.22 -15.14 -0.08 -4.51 16 8 C -0.14 -5.31 9.47 27.10 0.26 -5.05 16 9 C 0.20 9.79 5.25 85.40 0.45 10.24 16 10 N -0.62 -30.59 3.01 -703.12 -2.12 -32.70 16 11 C -0.26 -14.19 9.71 84.03 0.82 -13.38 16 12 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 13 C -0.05 -2.97 5.01 84.86 0.43 -2.55 16 14 N -0.94 -55.05 11.07 21.65 0.24 -54.81 16 15 Si 0.97 44.83 29.58 68.60 2.03 46.86 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.14 5.40 6.57 86.26 0.57 5.97 16 20 C -0.08 -2.66 5.95 29.66 0.18 -2.48 16 21 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 22 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 24 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.41 7.58 8.46 -92.71 -0.78 6.79 16 27 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 28 H 0.06 1.72 7.78 -2.39 -0.02 1.70 16 29 H 0.11 3.70 7.73 -2.91 -0.02 3.68 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 3.08 6.40 -2.39 -0.02 3.07 16 32 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -68.12 298.63 2.42 -65.70 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.27 Total: 10.88 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.64 Total: 2.84 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.47 Total: -106.41 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -68.12 2.42 -65.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718013671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.972 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds