Wall clock time and date at job start Sun Mar 29 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 119.99978 * 2 1 4 4 C 1.32990 * 120.00153 * 180.02562 * 2 1 3 5 5 C 1.47108 * 120.00050 * 359.97438 * 4 2 1 6 6 O 1.21613 * 119.99898 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99723 * 179.97438 * 5 4 2 8 8 C 1.46500 * 119.99476 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46565 * 180.02562 * 8 7 5 10 10 H 1.09003 * 112.74038 * 303.75665 * 9 8 7 11 11 C 1.53507 * 113.46378 * 172.94255 * 9 8 7 12 12 C 1.53758 * 83.25393 * 218.98249 * 11 9 8 13 13 N 1.47058 * 87.89067 * 26.23692 * 12 11 9 14 14 C 1.36945 * 136.05658 * 152.96230 * 13 12 11 15 15 H 1.07997 * 119.99756 * 179.63040 * 14 13 12 16 16 C 1.38805 * 119.99878 * 359.62946 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 H 1.09003 * 109.47090 * 239.99429 * 1 2 3 23 23 H 1.08996 * 109.47418 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47363 * 120.00019 * 1 2 3 25 25 H 1.09003 * 109.47097 * 270.00651 * 3 2 1 26 26 H 1.09003 * 109.46563 * 30.00133 * 3 2 1 27 27 H 1.09002 * 109.47304 * 150.00026 * 3 2 1 28 28 H 1.08004 * 119.99940 * 179.97438 * 4 2 1 29 29 H 0.96997 * 119.99860 * 0.02562 * 7 5 4 30 30 H 1.08998 * 109.47069 * 60.00389 * 8 7 5 31 31 H 1.08997 * 109.47266 * 300.00143 * 8 7 5 32 32 H 1.08997 * 114.20537 * 332.73818 * 11 9 8 33 33 H 1.08993 * 114.20481 * 105.36835 * 11 9 8 34 34 H 1.09004 * 113.46127 * 271.49898 * 12 11 9 35 35 H 1.09004 * 113.55107 * 140.98850 * 12 11 9 36 36 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2204 -2.4258 0.0004 7 7 2.1105 -3.5929 -0.0016 8 6 1.3780 -4.8616 -0.0010 9 6 2.3723 -6.0245 -0.0018 10 1 3.0701 -5.9817 -0.8381 11 6 1.7076 -7.3972 0.1718 12 6 2.9402 -7.6817 1.0457 13 7 3.0278 -6.2355 1.2977 14 6 3.5121 -5.4366 2.2990 15 1 3.4455 -4.3622 2.2125 16 6 4.0886 -6.0079 3.4251 17 7 4.1702 -7.3174 3.5303 18 14 4.7499 -4.9182 4.7906 19 1 6.1765 -4.6029 4.5253 20 1 3.9657 -3.6581 4.8420 21 1 4.6331 -5.6273 6.0901 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3634 1.0276 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 2.4421 1.6198 -1.0277 26 1 1.6713 2.0647 0.5139 27 1 3.2129 1.1748 0.5138 28 1 3.2520 -1.1517 -0.0009 29 1 3.0804 -3.5928 -0.0019 30 1 0.7503 -4.9192 -0.8903 31 1 0.7523 -4.9196 0.8897 32 1 0.7647 -7.3713 0.7180 33 1 1.6600 -7.9894 -0.7420 34 1 3.7876 -8.0768 0.4853 35 1 2.7158 -8.2651 1.9386 36 1 4.5734 -7.7165 4.3171 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723399330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:44 Heat of formation + Delta-G solvation = 27.852012 kcal Electronic energy + Delta-G solvation = -16987.260579 eV Core-core repulsion = 14280.558553 eV Total energy + Delta-G solvation = -2706.702026 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.47903 -38.12899 -35.43390 -33.86181 -32.20917 -28.90804 -27.94909 -27.74182 -26.58280 -23.46542 -22.20641 -20.62947 -19.35677 -18.49724 -16.92369 -16.31956 -15.45840 -15.26495 -14.63330 -14.17575 -14.07995 -13.76788 -13.62135 -13.20426 -12.88580 -12.35111 -12.28754 -11.81367 -11.68129 -11.51071 -11.49265 -11.10238 -10.95993 -10.75948 -10.56476 -9.95202 -9.82264 -9.42608 -9.10770 -9.05935 -8.81105 -8.37849 -6.89726 -5.76939 -3.09492 1.55808 3.37429 3.43046 3.44883 3.63499 3.76147 4.43536 4.84238 4.89447 5.20381 5.32322 5.40307 5.40922 5.51337 5.58285 5.69917 5.74528 5.80045 5.93833 5.96035 6.14129 6.19623 6.34880 6.41321 6.57468 6.61217 6.63855 6.75795 7.00151 7.23437 7.40076 7.58157 7.97761 8.04648 8.69902 9.03160 9.70226 10.63170 11.40297 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.007132 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.798912 B = 3924.762353 C = 4992.915823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.046 4.046 3 C -0.124 4.124 4 C -0.226 4.226 5 C 0.539 3.461 6 O -0.555 6.555 7 N -0.711 5.711 8 C 0.123 3.877 9 C 0.127 3.873 10 H 0.047 0.953 11 C -0.161 4.161 12 C 0.151 3.849 13 N -0.601 5.601 14 C -0.213 4.213 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.290 1.290 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.402 0.598 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 10.457 -8.625 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.048 4.048 3 C -0.181 4.181 4 C -0.247 4.247 5 C 0.329 3.671 6 O -0.436 6.436 7 N -0.360 5.360 8 C -0.002 4.002 9 C 0.019 3.981 10 H 0.065 0.935 11 C -0.200 4.200 12 C 0.025 3.975 13 N -0.327 5.327 14 C -0.340 4.340 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.206 1.206 21 H -0.216 1.216 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.237 0.763 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.070 10.492 -8.275 13.969 hybrid contribution 1.213 0.457 0.788 1.517 sum -2.858 10.950 -7.486 13.569 Atomic orbital electron populations 1.20997 0.90916 1.00493 1.04429 1.22493 0.96852 0.94349 0.91147 1.20988 1.00109 0.94422 1.02559 1.22474 1.00096 0.92309 1.09836 1.18518 0.87381 0.84450 0.76790 1.90726 1.13769 1.87896 1.51255 1.45878 1.10611 1.05707 1.73789 1.21755 0.95096 0.82200 1.01123 1.22419 0.92591 0.92440 0.90667 0.93529 1.23699 0.99916 0.96485 0.99897 1.22085 0.91427 0.87687 0.96256 1.45703 1.69717 1.02740 1.14565 1.18876 1.31925 0.88914 0.94329 0.90154 1.24775 1.01455 0.95863 0.98367 1.69830 1.49325 1.08286 1.29160 0.86173 0.78763 0.79429 0.81760 1.21660 1.20625 1.21624 0.89955 0.93417 0.90143 0.90638 0.91204 0.91205 0.85875 0.76337 0.92440 0.91234 0.90218 0.92394 0.95780 0.90933 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.33 36.01 0.30 -1.16 16 2 C -0.05 -0.59 6.11 -101.17 -0.62 -1.20 16 3 C -0.12 -1.13 9.98 36.01 0.36 -0.77 16 4 C -0.23 -3.23 9.63 -37.80 -0.36 -3.60 16 5 C 0.54 9.53 7.73 -12.66 -0.10 9.43 16 6 O -0.55 -11.07 13.07 5.27 0.07 -11.00 16 7 N -0.71 -12.62 5.33 -61.49 -0.33 -12.95 16 8 C 0.12 2.30 5.52 -4.04 -0.02 2.28 16 9 C 0.13 2.48 4.10 -72.39 -0.30 2.18 16 10 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.16 -2.98 8.04 -26.07 -0.21 -3.19 16 12 C 0.15 3.49 7.41 -8.37 -0.06 3.43 16 13 N -0.60 -14.83 3.65 -176.82 -0.65 -15.48 16 14 C -0.21 -5.78 10.55 -15.06 -0.16 -5.94 16 15 H 0.08 2.10 7.50 -52.49 -0.39 1.70 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -27.16 11.50 55.49 0.64 -26.53 16 18 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H 0.08 1.24 7.22 -51.93 -0.37 0.87 16 23 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 24 H 0.08 1.14 7.22 -51.93 -0.37 0.77 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 27 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 29 H 0.40 6.82 8.35 -40.82 -0.34 6.48 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.87 7.11 -51.93 -0.37 1.50 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -31.50 302.13 -7.62 -39.12 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.62 Total: 4.00 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.27 Total: 1.16 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.33 Total: -54.95 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.50 -7.62 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723399330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.972 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds