Wall clock time and date at job start Sun Mar 29 2020 22:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 119.99978 * 2 1 4 4 C 1.32990 * 120.00153 * 180.02562 * 2 1 3 5 5 C 1.47108 * 120.00050 * 359.97438 * 4 2 1 6 6 O 1.21613 * 119.99898 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99723 * 179.97438 * 5 4 2 8 8 C 1.46500 * 119.99476 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46565 * 180.02562 * 8 7 5 10 10 H 1.09003 * 112.74038 * 303.75665 * 9 8 7 11 11 C 1.53507 * 113.46378 * 172.94255 * 9 8 7 12 12 C 1.53758 * 83.25393 * 218.98249 * 11 9 8 13 13 N 1.47058 * 87.89067 * 26.23692 * 12 11 9 14 14 C 1.36945 * 136.05658 * 152.96230 * 13 12 11 15 15 H 1.07997 * 119.99756 * 179.63040 * 14 13 12 16 16 C 1.38805 * 119.99878 * 359.62946 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 H 1.09003 * 109.47090 * 239.99429 * 1 2 3 23 23 H 1.08996 * 109.47418 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47363 * 120.00019 * 1 2 3 25 25 H 1.09003 * 109.47097 * 270.00651 * 3 2 1 26 26 H 1.09003 * 109.46563 * 30.00133 * 3 2 1 27 27 H 1.09002 * 109.47304 * 150.00026 * 3 2 1 28 28 H 1.08004 * 119.99940 * 179.97438 * 4 2 1 29 29 H 0.96997 * 119.99860 * 0.02562 * 7 5 4 30 30 H 1.08998 * 109.47069 * 60.00389 * 8 7 5 31 31 H 1.08997 * 109.47266 * 300.00143 * 8 7 5 32 32 H 1.08997 * 114.20537 * 332.73818 * 11 9 8 33 33 H 1.08993 * 114.20481 * 105.36835 * 11 9 8 34 34 H 1.09004 * 113.46127 * 271.49898 * 12 11 9 35 35 H 1.09004 * 113.55107 * 140.98850 * 12 11 9 36 36 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2204 -2.4258 0.0004 7 7 2.1105 -3.5929 -0.0016 8 6 1.3780 -4.8616 -0.0010 9 6 2.3723 -6.0245 -0.0018 10 1 3.0701 -5.9817 -0.8381 11 6 1.7076 -7.3972 0.1718 12 6 2.9402 -7.6817 1.0457 13 7 3.0278 -6.2355 1.2977 14 6 3.5121 -5.4366 2.2990 15 1 3.4455 -4.3622 2.2125 16 6 4.0886 -6.0079 3.4251 17 7 4.1702 -7.3174 3.5303 18 14 4.7499 -4.9182 4.7906 19 1 6.1765 -4.6029 4.5253 20 1 3.9657 -3.6581 4.8420 21 1 4.6331 -5.6273 6.0901 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3634 1.0276 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 2.4421 1.6198 -1.0277 26 1 1.6713 2.0647 0.5139 27 1 3.2129 1.1748 0.5138 28 1 3.2520 -1.1517 -0.0009 29 1 3.0804 -3.5928 -0.0019 30 1 0.7503 -4.9192 -0.8903 31 1 0.7523 -4.9196 0.8897 32 1 0.7647 -7.3713 0.7180 33 1 1.6600 -7.9894 -0.7420 34 1 3.7876 -8.0768 0.4853 35 1 2.7158 -8.2651 1.9386 36 1 4.5734 -7.7165 4.3171 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723399330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:43 Heat of formation + Delta-G solvation = 6.998970 kcal Electronic energy + Delta-G solvation = -16988.164834 eV Core-core repulsion = 14280.558553 eV Total energy + Delta-G solvation = -2707.606282 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88439 -39.77963 -36.52265 -35.31645 -34.23944 -30.29150 -29.83062 -28.63065 -27.89479 -25.39718 -23.77903 -21.98916 -21.06630 -19.78630 -18.59539 -17.75500 -17.09404 -16.83833 -16.17941 -15.75407 -15.49251 -15.02626 -14.95731 -14.60194 -14.35550 -13.60184 -13.36505 -13.30526 -13.14796 -12.97598 -12.69945 -12.63941 -12.57186 -12.41021 -12.33896 -11.83052 -11.62963 -11.12752 -10.85440 -10.51481 -10.24763 -9.73961 -8.89403 -7.87678 -5.19542 0.45384 1.43356 1.45129 1.53004 2.31173 2.42242 2.49472 3.34374 3.44924 3.81932 3.94446 3.95005 4.15230 4.33968 4.34518 4.58395 4.64581 4.69345 4.71282 4.81413 4.89112 4.92709 5.04761 5.05496 5.10078 5.18931 5.32814 5.51079 5.56783 5.61238 5.66348 5.74186 5.97260 6.68284 6.93953 7.33849 7.63966 8.63851 9.29975 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.007132 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.798912 B = 3924.762353 C = 4992.915823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.029 4.029 3 C -0.122 4.122 4 C -0.252 4.252 5 C 0.532 3.468 6 O -0.586 6.586 7 N -0.713 5.713 8 C 0.133 3.867 9 C 0.133 3.867 10 H 0.069 0.931 11 C -0.134 4.134 12 C 0.142 3.858 13 N -0.629 5.629 14 C -0.208 4.208 15 H 0.086 0.914 16 C -0.072 4.072 17 N -0.955 5.955 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.273 1.273 21 H -0.299 1.299 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.406 0.594 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 12.594 -9.932 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.031 4.031 3 C -0.178 4.178 4 C -0.273 4.273 5 C 0.323 3.677 6 O -0.470 6.470 7 N -0.362 5.362 8 C 0.008 3.992 9 C 0.026 3.974 10 H 0.086 0.914 11 C -0.173 4.173 12 C 0.017 3.983 13 N -0.356 5.356 14 C -0.336 4.336 15 H 0.104 0.896 16 C -0.265 4.265 17 N -0.604 5.604 18 Si 0.799 3.201 19 H -0.211 1.211 20 H -0.198 1.198 21 H -0.225 1.225 22 H 0.076 0.924 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.241 0.759 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.920 12.652 -9.618 16.370 hybrid contribution 1.082 -0.157 1.115 1.562 sum -2.838 12.495 -8.504 15.378 Atomic orbital electron populations 1.20967 0.91592 1.01864 1.02499 1.22908 0.96697 0.95598 0.87932 1.21078 1.00138 0.92454 1.04153 1.22497 1.00979 0.91070 1.12719 1.19136 0.87265 0.85416 0.75875 1.90710 1.15131 1.88378 1.52752 1.45886 1.10758 1.05561 1.73974 1.21529 0.94650 0.82588 1.00463 1.22562 0.92519 0.93409 0.88869 0.91418 1.23519 0.97571 0.95843 1.00366 1.22105 0.93684 0.86743 0.95801 1.46023 1.69831 1.03508 1.16194 1.19227 1.29989 0.89583 0.94822 0.89604 1.25553 1.03014 0.97033 1.00876 1.70015 1.51108 1.09808 1.29500 0.85195 0.78318 0.77920 0.78672 1.21065 1.19769 1.22538 0.92426 0.90317 0.91618 0.88596 0.89610 0.90398 0.83890 0.75881 0.90567 0.94378 0.90364 0.88172 0.95891 0.94541 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 8.33 71.24 0.59 -2.19 16 2 C -0.03 -0.67 6.11 -17.62 -0.11 -0.78 16 3 C -0.12 -1.74 9.98 71.24 0.71 -1.03 16 4 C -0.25 -6.78 9.63 23.43 0.23 -6.55 16 5 C 0.53 18.47 7.73 86.57 0.67 19.14 16 6 O -0.59 -23.44 13.07 -4.07 -0.05 -23.49 16 7 N -0.71 -24.66 5.33 -466.71 -2.49 -27.15 16 8 C 0.13 4.83 5.52 86.38 0.48 5.31 16 9 C 0.13 4.99 4.10 41.80 0.17 5.16 16 10 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 11 C -0.13 -4.72 8.04 31.02 0.25 -4.47 16 12 C 0.14 6.61 7.41 83.27 0.62 7.23 16 13 N -0.63 -30.98 3.65 -713.35 -2.60 -33.58 16 14 C -0.21 -11.30 10.55 84.03 0.89 -10.42 16 15 H 0.09 4.45 7.50 -2.91 -0.02 4.43 16 16 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 17 N -0.95 -57.98 11.50 21.65 0.25 -57.73 16 18 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H 0.06 1.73 7.22 -2.39 -0.02 1.71 16 23 H 0.08 1.41 7.94 -2.39 -0.02 1.39 16 24 H 0.07 1.83 7.22 -2.39 -0.02 1.81 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 0.99 8.05 -2.39 -0.02 0.98 16 27 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 28 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 29 H 0.41 13.29 8.35 -92.71 -0.77 12.52 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.79 8.12 -2.39 -0.02 2.77 16 33 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.04 1.94 7.11 -2.39 -0.02 1.92 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -69.55 302.13 2.38 -67.17 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.29 Total: 18.92 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 4.96 Total: 7.75 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.84 Total: -118.47 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -69.55 2.38 -67.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723399330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.168 kcal (2) G-P(sol) polarization free energy of solvation -69.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds