Wall clock time and date at job start Sun Mar 29 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50700 * 119.99899 * 2 1 4 4 C 1.32991 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.47107 * 120.00282 * 185.67392 * 4 2 1 6 6 O 1.21618 * 119.99219 * 5.64827 * 5 4 2 7 7 N 1.34772 * 120.00199 * 185.64069 * 5 4 2 8 8 C 1.46504 * 119.99779 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47010 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.97032 * 53.31628 * 9 8 7 11 11 C 1.53947 * 113.76872 * 185.00076 * 9 8 7 12 12 C 1.53949 * 86.28920 * 137.90507 * 11 9 8 13 13 N 1.47579 * 86.11686 * 336.39251 * 12 11 9 14 14 C 1.36942 * 134.48991 * 204.63939 * 13 12 11 15 15 H 1.08004 * 119.99514 * 174.80538 * 14 13 12 16 16 C 1.38804 * 120.00190 * 354.81177 * 14 13 12 17 17 N 1.31616 * 120.00380 * 5.00870 * 16 14 13 18 18 Si 1.86807 * 119.99877 * 185.00685 * 16 14 13 19 19 H 1.48507 * 109.46853 * 94.99882 * 18 16 14 20 20 H 1.48502 * 109.47138 * 214.99528 * 18 16 14 21 21 H 1.48496 * 109.47315 * 334.99792 * 18 16 14 22 22 H 1.08996 * 109.46977 * 89.99825 * 1 2 3 23 23 H 1.09000 * 109.46628 * 209.99352 * 1 2 3 24 24 H 1.08994 * 109.46819 * 329.99404 * 1 2 3 25 25 H 1.08997 * 109.47429 * 354.80119 * 3 2 1 26 26 H 1.09002 * 109.46612 * 114.79800 * 3 2 1 27 27 H 1.08996 * 109.47047 * 234.79352 * 3 2 1 28 28 H 1.07998 * 120.00126 * 5.68257 * 4 2 1 29 29 H 0.96994 * 120.00228 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.46802 * 300.00511 * 8 7 5 31 31 H 1.08999 * 109.46743 * 60.00258 * 8 7 5 32 32 H 1.08995 * 113.74135 * 252.24806 * 11 9 8 33 33 H 1.08998 * 113.73975 * 23.45260 * 11 9 8 34 34 H 1.09003 * 113.77131 * 90.69028 * 12 11 9 35 35 H 1.09001 * 113.76759 * 222.09407 * 12 11 9 36 36 H 0.97005 * 120.00620 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6376 -1.1550 0.1254 6 8 4.2323 -0.1146 0.3329 7 7 4.3213 -2.3108 0.0110 8 6 5.7809 -2.3140 0.1370 9 6 6.3043 -3.7416 -0.0327 10 1 5.9575 -4.2154 -0.9511 11 6 7.8195 -3.8791 0.2025 12 6 7.4818 -5.1693 0.9714 13 7 6.1429 -4.5813 1.1702 14 6 5.1497 -4.7478 2.0981 15 1 4.2711 -4.1204 2.0672 16 6 5.2722 -5.7228 3.0785 17 7 6.3839 -6.4204 3.1777 18 14 3.8592 -6.0449 4.2572 19 1 3.0328 -7.1671 3.7443 20 1 4.4005 -6.3994 5.5938 21 1 3.0210 -4.8243 4.3704 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3633 0.8899 0.5139 25 1 1.5559 2.1315 -0.0931 26 1 2.8154 1.4042 0.9329 27 1 2.9552 1.3235 -0.8397 28 1 1.6360 -2.0847 -0.0935 29 1 3.8470 -3.1405 -0.1547 30 1 6.2134 -1.6748 -0.6327 31 1 6.0614 -1.9384 1.1211 32 1 8.3915 -4.0488 -0.7096 33 1 8.2398 -3.0911 0.8274 34 1 7.4805 -6.0642 0.3490 35 1 8.0491 -5.2921 1.8941 36 1 6.4694 -7.1020 3.8625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723399331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:46 Heat of formation + Delta-G solvation = 24.038956 kcal Electronic energy + Delta-G solvation = -16949.744896 eV Core-core repulsion = 14242.877524 eV Total energy + Delta-G solvation = -2706.867372 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.46515 -37.95678 -35.44325 -33.87903 -32.17488 -28.92654 -27.88778 -27.75706 -26.63621 -23.35233 -22.35364 -20.65646 -19.27576 -18.47156 -16.91700 -16.28773 -15.49756 -15.26831 -14.64828 -14.19123 -14.07141 -13.78274 -13.60955 -13.24143 -12.90805 -12.43747 -12.22293 -11.83362 -11.67178 -11.50373 -11.43507 -11.06565 -10.99439 -10.73991 -10.51445 -9.97690 -9.74194 -9.53190 -9.18442 -9.04288 -8.79432 -8.40112 -6.87318 -5.76749 -3.08219 1.53754 3.38082 3.43675 3.45689 3.62080 3.74102 4.44442 4.83072 4.88480 5.13939 5.30837 5.39814 5.40488 5.51407 5.63374 5.68294 5.73324 5.78962 5.93224 5.94559 6.12624 6.17927 6.33650 6.42071 6.56312 6.62061 6.64109 6.76241 6.99175 7.26934 7.41623 7.60914 7.99102 8.03056 8.68561 9.05389 9.71902 10.61060 11.40470 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.006949 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.732684 B = 4028.356572 C = 5098.921535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.046 4.046 3 C -0.113 4.113 4 C -0.227 4.227 5 C 0.540 3.460 6 O -0.555 6.555 7 N -0.711 5.711 8 C 0.124 3.876 9 C 0.125 3.875 10 H 0.049 0.951 11 C -0.156 4.156 12 C 0.160 3.840 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.402 0.598 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 9.341 -8.350 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.048 4.048 3 C -0.169 4.169 4 C -0.248 4.248 5 C 0.329 3.671 6 O -0.436 6.436 7 N -0.360 5.360 8 C 0.000 4.000 9 C 0.018 3.982 10 H 0.066 0.934 11 C -0.195 4.195 12 C 0.035 3.965 13 N -0.329 5.329 14 C -0.347 4.347 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.236 0.764 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.658 9.904 -7.901 14.313 hybrid contribution -1.094 -0.984 0.591 1.586 sum -7.752 8.920 -7.311 13.896 Atomic orbital electron populations 1.20985 0.91413 1.03147 1.02551 1.22486 0.95671 0.95492 0.91136 1.20992 0.98905 0.92632 1.04415 1.22476 0.93770 0.98832 1.09719 1.18513 0.87793 0.83668 0.77093 1.90727 1.71091 1.31675 1.50109 1.45885 1.08456 1.09714 1.71978 1.21713 0.78881 0.97946 1.01496 1.22506 0.94005 0.90074 0.91642 0.93365 1.23782 0.94760 1.01209 0.99776 1.22157 0.85951 0.91357 0.97011 1.46063 1.16747 1.46221 1.23857 1.18980 0.97498 1.13733 1.04470 0.90257 1.24782 0.97559 0.98499 0.99538 1.69835 1.24813 1.26092 1.35814 0.86198 0.81744 0.78018 0.80465 1.21704 1.21725 1.20607 0.90711 0.91170 0.91120 0.93311 0.89578 0.90602 0.85835 0.76360 0.92329 0.91140 0.92835 0.90535 0.95477 0.91110 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.97 36.01 0.36 -0.76 16 2 C -0.05 -0.57 6.11 -101.17 -0.62 -1.19 16 3 C -0.11 -1.44 8.33 36.01 0.30 -1.14 16 4 C -0.23 -3.21 9.62 -37.80 -0.36 -3.58 16 5 C 0.54 9.47 7.69 -12.66 -0.10 9.37 16 6 O -0.55 -11.02 13.20 5.26 0.07 -10.95 16 7 N -0.71 -12.50 5.51 -61.49 -0.34 -12.83 16 8 C 0.12 2.31 5.54 -4.04 -0.02 2.29 16 9 C 0.13 2.45 4.33 -66.86 -0.29 2.16 16 10 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.16 -2.89 7.86 -25.80 -0.20 -3.10 16 12 C 0.16 3.72 7.45 -2.97 -0.02 3.70 16 13 N -0.60 -14.87 3.57 -170.74 -0.61 -15.48 16 14 C -0.22 -5.96 10.50 -15.06 -0.16 -6.12 16 15 H 0.08 2.09 7.79 -52.48 -0.41 1.68 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -27.15 11.47 55.49 0.64 -26.52 16 18 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.05 0.49 7.98 -51.93 -0.41 0.07 16 26 H 0.09 1.27 7.09 -51.93 -0.37 0.91 16 27 H 0.08 1.05 7.41 -51.93 -0.38 0.67 16 28 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.40 6.69 8.46 -40.82 -0.35 6.35 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.82 7.29 -51.93 -0.38 1.44 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -31.60 303.03 -7.57 -39.17 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.65 Total: 3.57 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.21 Total: 1.34 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.31 Total: -54.83 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.60 -7.57 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723399331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.204 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds