Wall clock time and date at job start Sun Mar 29 2020 22:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50700 * 119.99899 * 2 1 4 4 C 1.32991 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.47107 * 120.00282 * 185.67392 * 4 2 1 6 6 O 1.21618 * 119.99219 * 5.64827 * 5 4 2 7 7 N 1.34772 * 120.00199 * 185.64069 * 5 4 2 8 8 C 1.46504 * 119.99779 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47010 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.97032 * 53.31628 * 9 8 7 11 11 C 1.53947 * 113.76872 * 185.00076 * 9 8 7 12 12 C 1.53949 * 86.28920 * 137.90507 * 11 9 8 13 13 N 1.47579 * 86.11686 * 336.39251 * 12 11 9 14 14 C 1.36942 * 134.48991 * 204.63939 * 13 12 11 15 15 H 1.08004 * 119.99514 * 174.80538 * 14 13 12 16 16 C 1.38804 * 120.00190 * 354.81177 * 14 13 12 17 17 N 1.31616 * 120.00380 * 5.00870 * 16 14 13 18 18 Si 1.86807 * 119.99877 * 185.00685 * 16 14 13 19 19 H 1.48507 * 109.46853 * 94.99882 * 18 16 14 20 20 H 1.48502 * 109.47138 * 214.99528 * 18 16 14 21 21 H 1.48496 * 109.47315 * 334.99792 * 18 16 14 22 22 H 1.08996 * 109.46977 * 89.99825 * 1 2 3 23 23 H 1.09000 * 109.46628 * 209.99352 * 1 2 3 24 24 H 1.08994 * 109.46819 * 329.99404 * 1 2 3 25 25 H 1.08997 * 109.47429 * 354.80119 * 3 2 1 26 26 H 1.09002 * 109.46612 * 114.79800 * 3 2 1 27 27 H 1.08996 * 109.47047 * 234.79352 * 3 2 1 28 28 H 1.07998 * 120.00126 * 5.68257 * 4 2 1 29 29 H 0.96994 * 120.00228 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.46802 * 300.00511 * 8 7 5 31 31 H 1.08999 * 109.46743 * 60.00258 * 8 7 5 32 32 H 1.08995 * 113.74135 * 252.24806 * 11 9 8 33 33 H 1.08998 * 113.73975 * 23.45260 * 11 9 8 34 34 H 1.09003 * 113.77131 * 90.69028 * 12 11 9 35 35 H 1.09001 * 113.76759 * 222.09407 * 12 11 9 36 36 H 0.97005 * 120.00620 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6376 -1.1550 0.1254 6 8 4.2323 -0.1146 0.3329 7 7 4.3213 -2.3108 0.0110 8 6 5.7809 -2.3140 0.1370 9 6 6.3043 -3.7416 -0.0327 10 1 5.9575 -4.2154 -0.9511 11 6 7.8195 -3.8791 0.2025 12 6 7.4818 -5.1693 0.9714 13 7 6.1429 -4.5813 1.1702 14 6 5.1497 -4.7478 2.0981 15 1 4.2711 -4.1204 2.0672 16 6 5.2722 -5.7228 3.0785 17 7 6.3839 -6.4204 3.1777 18 14 3.8592 -6.0449 4.2572 19 1 3.0328 -7.1671 3.7443 20 1 4.4005 -6.3994 5.5938 21 1 3.0210 -4.8243 4.3704 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3633 0.8899 0.5139 25 1 1.5559 2.1315 -0.0931 26 1 2.8154 1.4042 0.9329 27 1 2.9552 1.3235 -0.8397 28 1 1.6360 -2.0847 -0.0935 29 1 3.8470 -3.1405 -0.1547 30 1 6.2134 -1.6748 -0.6327 31 1 6.0614 -1.9384 1.1211 32 1 8.3915 -4.0488 -0.7096 33 1 8.2398 -3.0911 0.8274 34 1 7.4805 -6.0642 0.3490 35 1 8.0491 -5.2921 1.8941 36 1 6.4694 -7.1020 3.8625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723399331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:45 Heat of formation + Delta-G solvation = 3.113709 kcal Electronic energy + Delta-G solvation = -16950.652283 eV Core-core repulsion = 14242.877524 eV Total energy + Delta-G solvation = -2707.774759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84781 -39.62132 -36.52178 -35.33047 -34.20648 -30.29430 -29.78825 -28.63366 -27.93738 -25.29337 -23.92352 -22.00200 -20.95864 -19.77383 -18.57065 -17.73568 -17.10330 -16.86199 -16.17846 -15.75478 -15.51131 -15.00254 -14.97659 -14.62956 -14.37991 -13.57258 -13.35422 -13.30759 -13.13625 -12.93209 -12.68858 -12.65217 -12.57193 -12.40265 -12.28710 -11.84480 -11.52519 -11.30728 -10.84069 -10.57076 -10.22057 -9.74310 -8.87438 -7.87988 -5.18893 0.44624 1.43584 1.44475 1.52913 2.30726 2.41411 2.49650 3.31466 3.40592 3.83134 3.95154 3.99632 4.14142 4.33702 4.35441 4.58950 4.63973 4.70435 4.71258 4.81330 4.88875 4.92544 5.05216 5.05642 5.10759 5.19019 5.34384 5.51279 5.57846 5.62217 5.66128 5.74635 5.98008 6.68041 6.95807 7.33713 7.65285 8.60776 9.29444 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.006949 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.732684 B = 4028.356572 C = 5098.921535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.028 4.028 3 C -0.114 4.114 4 C -0.253 4.253 5 C 0.533 3.467 6 O -0.586 6.586 7 N -0.713 5.713 8 C 0.135 3.865 9 C 0.132 3.868 10 H 0.070 0.930 11 C -0.131 4.131 12 C 0.152 3.848 13 N -0.630 5.630 14 C -0.215 4.215 15 H 0.084 0.916 16 C -0.071 4.071 17 N -0.954 5.954 18 Si 0.967 3.033 19 H -0.286 1.286 20 H -0.299 1.299 21 H -0.271 1.271 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.143 0.857 29 H 0.407 0.593 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 10.426 -9.704 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.030 4.030 3 C -0.170 4.170 4 C -0.274 4.274 5 C 0.324 3.676 6 O -0.470 6.470 7 N -0.362 5.362 8 C 0.009 3.991 9 C 0.026 3.974 10 H 0.088 0.912 11 C -0.169 4.169 12 C 0.027 3.973 13 N -0.356 5.356 14 C -0.343 4.343 15 H 0.101 0.899 16 C -0.264 4.264 17 N -0.603 5.603 18 Si 0.796 3.204 19 H -0.213 1.213 20 H -0.226 1.226 21 H -0.196 1.196 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.242 0.758 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.555 11.006 -9.292 16.753 hybrid contribution -0.510 -1.207 0.947 1.617 sum -9.065 9.799 -8.345 15.742 Atomic orbital electron populations 1.21076 0.88331 1.04285 1.04176 1.22902 0.97734 0.94528 0.87852 1.20969 0.99273 0.94269 1.02525 1.22487 0.91710 1.00520 1.12663 1.19127 0.89282 0.82989 0.76185 1.90711 1.72068 1.32592 1.51633 1.45889 1.08012 1.10166 1.72128 1.21479 0.79924 0.97351 1.00304 1.22670 0.94737 0.89658 0.90348 0.91232 1.23575 0.94673 0.98109 1.00592 1.22130 0.85519 0.93481 0.96213 1.46408 1.16778 1.47108 1.25344 1.19312 0.97735 1.12725 1.04552 0.89876 1.25545 0.99790 0.99240 1.01777 1.70014 1.26592 1.27013 1.36707 0.85218 0.79117 0.78033 0.78001 1.21296 1.22624 1.19593 0.88585 0.90513 0.89534 0.90201 0.91953 0.92029 0.83919 0.75824 0.90437 0.94365 0.88724 0.90411 0.95906 0.94578 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.97 71.24 0.71 -1.02 16 2 C -0.03 -0.63 6.11 -17.62 -0.11 -0.74 16 3 C -0.11 -2.74 8.33 71.24 0.59 -2.15 16 4 C -0.25 -6.74 9.62 23.43 0.23 -6.51 16 5 C 0.53 18.35 7.69 86.57 0.67 19.02 16 6 O -0.59 -23.37 13.20 -4.09 -0.05 -23.42 16 7 N -0.71 -24.38 5.51 -466.70 -2.57 -26.95 16 8 C 0.13 4.87 5.54 86.38 0.48 5.35 16 9 C 0.13 4.95 4.33 45.09 0.20 5.14 16 10 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 11 C -0.13 -4.60 7.86 31.26 0.25 -4.36 16 12 C 0.15 7.08 7.45 86.48 0.64 7.73 16 13 N -0.63 -31.02 3.57 -694.10 -2.48 -33.50 16 14 C -0.21 -11.72 10.50 84.03 0.88 -10.83 16 15 H 0.08 4.36 7.79 -2.91 -0.02 4.34 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 17 N -0.95 -57.91 11.47 21.65 0.25 -57.66 16 18 Si 0.97 46.13 29.56 68.60 2.03 48.16 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 22 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 24 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 25 H 0.08 1.38 7.98 -2.39 -0.02 1.36 16 26 H 0.06 1.83 7.09 -2.39 -0.02 1.81 16 27 H 0.06 1.66 7.41 -2.39 -0.02 1.65 16 28 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.41 13.04 8.46 -92.71 -0.78 12.25 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.04 1.91 7.29 -2.39 -0.02 1.90 16 36 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -69.69 303.03 2.45 -67.25 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.27 Total: 18.06 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.00 Total: 8.05 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.80 Total: -118.11 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -69.69 2.45 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723399331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.361 kcal (2) G-P(sol) polarization free energy of solvation -69.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds