Wall clock time and date at job start Sun Mar 29 2020 22:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47699 * 2 1 4 4 C 1.50704 * 119.99756 * 275.00232 * 3 2 1 5 5 C 1.32992 * 120.00098 * 94.99568 * 3 2 1 6 6 C 1.47103 * 119.99976 * 188.34034 * 5 3 2 7 7 O 1.21609 * 120.00098 * 3.24794 * 6 5 3 8 8 N 1.34776 * 119.99592 * 183.24383 * 6 5 3 9 9 C 1.46503 * 119.99551 * 180.02562 * 8 6 5 10 10 C 1.53943 * 113.74321 * 253.73776 * 9 8 6 11 11 N 1.47812 * 86.04038 * 222.08752 * 10 9 8 12 12 C 1.36933 * 134.45667 * 204.64579 * 11 10 9 13 13 H 1.07998 * 119.99915 * 174.42531 * 12 11 10 14 14 C 1.38810 * 120.00346 * 354.43297 * 12 11 10 15 15 N 1.31620 * 119.99535 * 5.01524 * 14 12 11 16 16 Si 1.86797 * 120.00253 * 185.01809 * 14 12 11 17 17 H 1.48493 * 109.47083 * 94.99649 * 16 14 12 18 18 H 1.48505 * 109.46920 * 214.99453 * 16 14 12 19 19 H 1.48498 * 109.47259 * 334.99235 * 16 14 12 20 20 C 1.47581 * 91.04871 * 24.54799 * 11 10 9 21 21 H 1.09004 * 109.46415 * 59.99624 * 1 2 3 22 22 H 1.08993 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46524 * 300.00342 * 1 2 3 24 24 H 1.09007 * 109.46934 * 240.00058 * 2 1 3 25 25 H 1.08998 * 109.47097 * 120.00476 * 2 1 3 26 26 H 1.09006 * 109.47053 * 95.88367 * 4 3 2 27 27 H 1.09002 * 109.46991 * 215.88082 * 4 3 2 28 28 H 1.08999 * 109.47379 * 335.87904 * 4 3 2 29 29 H 1.08003 * 119.99605 * 8.34212 * 5 3 2 30 30 H 0.96991 * 120.00607 * 359.97438 * 8 6 5 31 31 H 1.08999 * 112.94725 * 25.34067 * 9 8 6 32 32 H 1.08997 * 113.77023 * 336.35897 * 10 9 8 33 33 H 1.09009 * 113.76780 * 107.74789 * 10 9 8 34 34 H 0.97001 * 119.99705 * 180.02562 * 15 14 12 35 35 H 1.09006 * 113.76982 * 221.15183 * 20 11 10 36 36 H 1.09004 * 113.76898 * 89.75926 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3488 2.0142 1.1474 6 6 2.6623 3.4513 1.1701 7 8 2.5750 4.1089 0.1509 8 7 3.0463 4.0390 2.3206 9 6 3.3581 5.4703 2.3434 10 6 4.8633 5.7752 2.4486 11 7 4.4785 6.8269 3.4133 12 6 5.0506 7.9974 3.8349 13 1 4.5119 8.6510 4.5049 14 6 6.3228 8.3439 3.4011 15 7 6.9394 7.5985 2.5086 16 14 7.1596 9.8680 4.0838 17 1 8.0366 9.4845 5.2192 18 1 7.9775 10.5025 3.0191 19 1 6.1302 10.8285 4.5559 20 6 3.2296 6.1105 3.7376 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.2857 2.7735 -1.4721 27 1 3.0515 2.8171 -1.2514 28 1 2.2961 1.4578 -2.1175 29 1 2.3754 1.4411 2.0624 30 1 3.1155 3.5146 3.1336 31 1 2.8512 6.0282 1.5561 32 1 5.4457 4.9662 2.8897 33 1 5.2990 6.1610 1.5268 34 1 7.8286 7.8404 2.2056 35 1 2.3632 6.7634 3.8431 36 1 3.3310 5.4002 4.5582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732099549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:21 Heat of formation + Delta-G solvation = 25.122518 kcal Electronic energy + Delta-G solvation = -16606.213924 eV Core-core repulsion = 13899.393539 eV Total energy + Delta-G solvation = -2706.820386 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.61753 -37.74861 -35.99219 -33.43497 -31.81440 -30.95167 -28.10336 -26.98805 -24.79785 -24.38759 -22.96230 -20.68845 -19.68404 -18.25903 -16.82193 -16.67603 -15.63224 -14.97131 -14.75617 -14.62816 -14.17390 -13.75734 -13.71488 -13.16720 -12.67632 -12.52629 -12.22614 -11.82198 -11.57053 -11.52091 -11.41688 -11.39796 -11.07637 -10.85958 -10.75041 -10.39156 -10.00820 -9.51887 -9.20048 -9.09598 -8.79570 -8.29305 -6.89627 -5.77401 -3.10528 1.48411 3.39937 3.44169 3.47432 3.60713 3.67270 4.46959 4.66007 4.74154 5.06080 5.12113 5.13887 5.31956 5.43809 5.48620 5.55961 5.62887 5.69310 5.76877 5.89079 5.97672 6.04008 6.15691 6.26750 6.45629 6.54876 6.56572 6.66173 6.86580 7.25946 7.40782 7.58314 7.96736 8.01786 8.68348 9.03543 9.69843 10.57755 11.39761 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064158 B = 0.004244 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.314843 B = 6596.255673 C = 6796.749860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.039 4.039 4 C -0.122 4.122 5 C -0.226 4.226 6 C 0.540 3.460 7 O -0.544 6.544 8 N -0.713 5.713 9 C 0.092 3.908 10 C 0.156 3.844 11 N -0.608 5.608 12 C -0.226 4.226 13 H 0.082 0.918 14 C -0.006 4.006 15 N -0.917 5.917 16 Si 0.913 3.087 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.112 3.888 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.396 0.604 31 H 0.109 0.891 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.048 0.952 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 -15.190 -2.956 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.041 4.041 4 C -0.178 4.178 5 C -0.247 4.247 6 C 0.329 3.671 7 O -0.425 6.425 8 N -0.363 5.363 9 C -0.013 4.013 10 C 0.030 3.970 11 N -0.334 5.334 12 C -0.354 4.354 13 H 0.100 0.900 14 C -0.203 4.203 15 N -0.563 5.563 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.015 4.015 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.229 0.771 31 H 0.127 0.873 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.724 -14.427 -3.656 18.344 hybrid contribution 0.701 0.436 1.037 1.326 sum -10.023 -13.991 -2.618 17.409 Atomic orbital electron populations 1.21705 0.94236 1.01805 1.02531 1.20739 0.96486 0.92970 1.03049 1.22498 0.90758 0.95230 0.95577 1.21127 1.04686 0.99317 0.92674 1.22479 1.08727 0.94592 0.98885 1.18543 0.77034 0.87872 0.83641 1.90743 1.53514 1.65784 1.32428 1.46049 1.68115 1.11116 1.10994 1.23857 0.99606 0.78754 0.99076 1.22664 0.90546 0.89232 0.94573 1.45715 1.20584 1.20138 1.47010 1.18995 0.97647 0.94377 1.24367 0.90027 1.24845 0.96833 0.99187 0.99437 1.69855 1.14439 1.39619 1.32393 0.86091 0.79480 0.82027 0.78125 1.21599 1.21635 1.20483 1.22877 0.91312 0.93728 0.93608 0.92339 0.92243 0.92348 0.90756 0.90916 0.90582 0.88909 0.93114 0.85987 0.77077 0.87276 0.95284 0.90866 0.93548 0.93349 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 37.16 0.37 -0.71 16 2 C -0.10 -0.78 6.10 -27.88 -0.17 -0.95 16 3 C -0.04 -0.44 5.36 -101.17 -0.54 -0.98 16 4 C -0.12 -1.53 8.47 36.01 0.30 -1.22 16 5 C -0.23 -2.81 9.62 -37.81 -0.36 -3.18 16 6 C 0.54 8.88 7.64 -12.66 -0.10 8.78 16 7 O -0.54 -10.75 12.87 5.27 0.07 -10.69 16 8 N -0.71 -11.52 5.37 -56.52 -0.30 -11.82 16 9 C 0.09 1.85 4.40 -70.13 -0.31 1.54 16 10 C 0.16 3.84 7.26 -2.84 -0.02 3.82 16 11 N -0.61 -15.96 3.70 -177.85 -0.66 -16.62 16 12 C -0.23 -6.47 10.70 -15.06 -0.16 -6.63 16 13 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 15 N -0.92 -27.84 11.48 55.49 0.64 -27.20 16 16 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.11 2.29 8.69 -2.97 -0.03 2.27 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.54 8.07 -51.92 -0.42 0.12 16 25 H 0.07 0.53 7.99 -51.93 -0.41 0.11 16 26 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 27 H 0.09 1.43 6.16 -51.93 -0.32 1.11 16 28 H 0.05 0.51 8.03 -51.93 -0.42 0.10 16 29 H 0.12 1.19 7.99 -52.48 -0.42 0.77 16 30 H 0.40 5.22 8.69 -40.82 -0.35 4.86 16 31 H 0.11 2.38 7.51 -51.93 -0.39 1.99 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 2.04 7.31 -51.92 -0.38 1.66 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -32.85 302.67 -7.44 -40.29 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.61 Total: 1.64 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.11 Total: 2.46 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.32 Total: -55.64 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.85 -7.44 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732099549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.417 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds