Wall clock time and date at job start Sun Mar 29 2020 22:27:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50699 * 109.47699 * 2 1
4 4 C 1.50704 * 119.99756 * 275.00232 * 3 2 1
5 5 C 1.32992 * 120.00098 * 94.99568 * 3 2 1
6 6 C 1.47103 * 119.99976 * 188.34034 * 5 3 2
7 7 O 1.21609 * 120.00098 * 3.24794 * 6 5 3
8 8 N 1.34776 * 119.99592 * 183.24383 * 6 5 3
9 9 C 1.46503 * 119.99551 * 180.02562 * 8 6 5
10 10 C 1.53943 * 113.74321 * 253.73776 * 9 8 6
11 11 N 1.47812 * 86.04038 * 222.08752 * 10 9 8
12 12 C 1.36933 * 134.45667 * 204.64579 * 11 10 9
13 13 H 1.07998 * 119.99915 * 174.42531 * 12 11 10
14 14 C 1.38810 * 120.00346 * 354.43297 * 12 11 10
15 15 N 1.31620 * 119.99535 * 5.01524 * 14 12 11
16 16 Si 1.86797 * 120.00253 * 185.01809 * 14 12 11
17 17 H 1.48493 * 109.47083 * 94.99649 * 16 14 12
18 18 H 1.48505 * 109.46920 * 214.99453 * 16 14 12
19 19 H 1.48498 * 109.47259 * 334.99235 * 16 14 12
20 20 C 1.47581 * 91.04871 * 24.54799 * 11 10 9
21 21 H 1.09004 * 109.46415 * 59.99624 * 1 2 3
22 22 H 1.08993 * 109.47370 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.46524 * 300.00342 * 1 2 3
24 24 H 1.09007 * 109.46934 * 240.00058 * 2 1 3
25 25 H 1.08998 * 109.47097 * 120.00476 * 2 1 3
26 26 H 1.09006 * 109.47053 * 95.88367 * 4 3 2
27 27 H 1.09002 * 109.46991 * 215.88082 * 4 3 2
28 28 H 1.08999 * 109.47379 * 335.87904 * 4 3 2
29 29 H 1.08003 * 119.99605 * 8.34212 * 5 3 2
30 30 H 0.96991 * 120.00607 * 359.97438 * 8 6 5
31 31 H 1.08999 * 112.94725 * 25.34067 * 9 8 6
32 32 H 1.08997 * 113.77023 * 336.35897 * 10 9 8
33 33 H 1.09009 * 113.76780 * 107.74789 * 10 9 8
34 34 H 0.97001 * 119.99705 * 180.02562 * 15 14 12
35 35 H 1.09006 * 113.76982 * 221.15183 * 20 11 10
36 36 H 1.09004 * 113.76898 * 89.75926 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0325 1.4208 0.0000
4 6 2.1764 2.1690 -1.3002
5 6 2.3488 2.0142 1.1474
6 6 2.6623 3.4513 1.1701
7 8 2.5750 4.1089 0.1509
8 7 3.0463 4.0390 2.3206
9 6 3.3581 5.4703 2.3434
10 6 4.8633 5.7752 2.4486
11 7 4.4785 6.8269 3.4133
12 6 5.0506 7.9974 3.8349
13 1 4.5119 8.6510 4.5049
14 6 6.3228 8.3439 3.4011
15 7 6.9394 7.5985 2.5086
16 14 7.1596 9.8680 4.0838
17 1 8.0366 9.4845 5.2192
18 1 7.9775 10.5025 3.0191
19 1 6.1302 10.8285 4.5559
20 6 3.2296 6.1105 3.7376
21 1 -0.3632 0.5139 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3632 0.5139 0.8900
24 1 1.8933 -0.5139 -0.8901
25 1 1.8933 -0.5139 0.8899
26 1 1.2857 2.7735 -1.4721
27 1 3.0515 2.8171 -1.2514
28 1 2.2961 1.4578 -2.1175
29 1 2.3754 1.4411 2.0624
30 1 3.1155 3.5146 3.1336
31 1 2.8512 6.0282 1.5561
32 1 5.4457 4.9662 2.8897
33 1 5.2990 6.1610 1.5268
34 1 7.8286 7.8404 2.2056
35 1 2.3632 6.7634 3.8431
36 1 3.3310 5.4002 4.5582
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732099549.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:27:21
Heat of formation + Delta-G solvation = 25.122518 kcal
Electronic energy + Delta-G solvation = -16606.213924 eV
Core-core repulsion = 13899.393539 eV
Total energy + Delta-G solvation = -2706.820386 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.61753 -37.74861 -35.99219 -33.43497 -31.81440 -30.95167 -28.10336 -26.98805
-24.79785 -24.38759 -22.96230 -20.68845 -19.68404 -18.25903 -16.82193 -16.67603
-15.63224 -14.97131 -14.75617 -14.62816 -14.17390 -13.75734 -13.71488 -13.16720
-12.67632 -12.52629 -12.22614 -11.82198 -11.57053 -11.52091 -11.41688 -11.39796
-11.07637 -10.85958 -10.75041 -10.39156 -10.00820 -9.51887 -9.20048 -9.09598
-8.79570 -8.29305 -6.89627 -5.77401 -3.10528 1.48411 3.39937 3.44169
3.47432 3.60713 3.67270 4.46959 4.66007 4.74154 5.06080 5.12113
5.13887 5.31956 5.43809 5.48620 5.55961 5.62887 5.69310 5.76877
5.89079 5.97672 6.04008 6.15691 6.26750 6.45629 6.54876 6.56572
6.66173 6.86580 7.25946 7.40782 7.58314 7.96736 8.01786 8.68348
9.03543 9.69843 10.57755 11.39761
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.064158 B = 0.004244 C = 0.004119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 436.314843 B = 6596.255673 C = 6796.749860
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.095 4.095
3 C -0.039 4.039
4 C -0.122 4.122
5 C -0.226 4.226
6 C 0.540 3.460
7 O -0.544 6.544
8 N -0.713 5.713
9 C 0.092 3.908
10 C 0.156 3.844
11 N -0.608 5.608
12 C -0.226 4.226
13 H 0.082 0.918
14 C -0.006 4.006
15 N -0.917 5.917
16 Si 0.913 3.087
17 H -0.289 1.289
18 H -0.290 1.290
19 H -0.279 1.279
20 C 0.112 3.888
21 H 0.057 0.943
22 H 0.059 0.941
23 H 0.057 0.943
24 H 0.074 0.926
25 H 0.072 0.928
26 H 0.076 0.924
27 H 0.092 0.908
28 H 0.050 0.950
29 H 0.122 0.878
30 H 0.396 0.604
31 H 0.109 0.891
32 H 0.029 0.971
33 H 0.073 0.927
34 H 0.254 0.746
35 H 0.048 0.952
36 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.924 -15.190 -2.956 18.942
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.132 4.132
3 C -0.041 4.041
4 C -0.178 4.178
5 C -0.247 4.247
6 C 0.329 3.671
7 O -0.425 6.425
8 N -0.363 5.363
9 C -0.013 4.013
10 C 0.030 3.970
11 N -0.334 5.334
12 C -0.354 4.354
13 H 0.100 0.900
14 C -0.203 4.203
15 N -0.563 5.563
16 Si 0.743 3.257
17 H -0.216 1.216
18 H -0.216 1.216
19 H -0.205 1.205
20 C -0.015 4.015
21 H 0.077 0.923
22 H 0.078 0.922
23 H 0.077 0.923
24 H 0.092 0.908
25 H 0.091 0.909
26 H 0.094 0.906
27 H 0.111 0.889
28 H 0.069 0.931
29 H 0.140 0.860
30 H 0.229 0.771
31 H 0.127 0.873
32 H 0.047 0.953
33 H 0.091 0.909
34 H 0.065 0.935
35 H 0.067 0.933
36 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -10.724 -14.427 -3.656 18.344
hybrid contribution 0.701 0.436 1.037 1.326
sum -10.023 -13.991 -2.618 17.409
Atomic orbital electron populations
1.21705 0.94236 1.01805 1.02531 1.20739 0.96486 0.92970 1.03049
1.22498 0.90758 0.95230 0.95577 1.21127 1.04686 0.99317 0.92674
1.22479 1.08727 0.94592 0.98885 1.18543 0.77034 0.87872 0.83641
1.90743 1.53514 1.65784 1.32428 1.46049 1.68115 1.11116 1.10994
1.23857 0.99606 0.78754 0.99076 1.22664 0.90546 0.89232 0.94573
1.45715 1.20584 1.20138 1.47010 1.18995 0.97647 0.94377 1.24367
0.90027 1.24845 0.96833 0.99187 0.99437 1.69855 1.14439 1.39619
1.32393 0.86091 0.79480 0.82027 0.78125 1.21599 1.21635 1.20483
1.22877 0.91312 0.93728 0.93608 0.92339 0.92243 0.92348 0.90756
0.90916 0.90582 0.88909 0.93114 0.85987 0.77077 0.87276 0.95284
0.90866 0.93548 0.93349 0.94758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.08 9.90 37.16 0.37 -0.71 16
2 C -0.10 -0.78 6.10 -27.88 -0.17 -0.95 16
3 C -0.04 -0.44 5.36 -101.17 -0.54 -0.98 16
4 C -0.12 -1.53 8.47 36.01 0.30 -1.22 16
5 C -0.23 -2.81 9.62 -37.81 -0.36 -3.18 16
6 C 0.54 8.88 7.64 -12.66 -0.10 8.78 16
7 O -0.54 -10.75 12.87 5.27 0.07 -10.69 16
8 N -0.71 -11.52 5.37 -56.52 -0.30 -11.82 16
9 C 0.09 1.85 4.40 -70.13 -0.31 1.54 16
10 C 0.16 3.84 7.26 -2.84 -0.02 3.82 16
11 N -0.61 -15.96 3.70 -177.85 -0.66 -16.62 16
12 C -0.23 -6.47 10.70 -15.06 -0.16 -6.63 16
13 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16
14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16
15 N -0.92 -27.84 11.48 55.49 0.64 -27.20 16
16 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16
17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
20 C 0.11 2.29 8.69 -2.97 -0.03 2.27 16
21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
24 H 0.07 0.54 8.07 -51.92 -0.42 0.12 16
25 H 0.07 0.53 7.99 -51.93 -0.41 0.11 16
26 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16
27 H 0.09 1.43 6.16 -51.93 -0.32 1.11 16
28 H 0.05 0.51 8.03 -51.93 -0.42 0.10 16
29 H 0.12 1.19 7.99 -52.48 -0.42 0.77 16
30 H 0.40 5.22 8.69 -40.82 -0.35 4.86 16
31 H 0.11 2.38 7.51 -51.93 -0.39 1.99 16
32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.07 2.04 7.31 -51.92 -0.38 1.66 16
34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16
35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16
LS Contribution 302.67 15.07 4.56 4.56
Total: -1.00 -32.85 302.67 -7.44 -40.29
By element:
Atomic # 1 Polarization: 7.25 SS G_CDS: -5.61 Total: 1.64 kcal
Atomic # 6 Polarization: 3.57 SS G_CDS: -1.11 Total: 2.46 kcal
Atomic # 7 Polarization: -55.31 SS G_CDS: -0.32 Total: -55.64 kcal
Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.69 kcal
Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -32.85 -7.44 -40.29 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732099549.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.417 kcal
(2) G-P(sol) polarization free energy of solvation -32.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds