Wall clock time and date at job start Sun Mar 29 2020 22:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47699 * 2 1 4 4 C 1.50704 * 119.99756 * 275.00232 * 3 2 1 5 5 C 1.32992 * 120.00098 * 94.99568 * 3 2 1 6 6 C 1.47103 * 119.99976 * 188.34034 * 5 3 2 7 7 O 1.21609 * 120.00098 * 3.24794 * 6 5 3 8 8 N 1.34776 * 119.99592 * 183.24383 * 6 5 3 9 9 C 1.46503 * 119.99551 * 180.02562 * 8 6 5 10 10 C 1.53943 * 113.74321 * 253.73776 * 9 8 6 11 11 N 1.47812 * 86.04038 * 222.08752 * 10 9 8 12 12 C 1.36933 * 134.45667 * 204.64579 * 11 10 9 13 13 H 1.07998 * 119.99915 * 174.42531 * 12 11 10 14 14 C 1.38810 * 120.00346 * 354.43297 * 12 11 10 15 15 N 1.31620 * 119.99535 * 5.01524 * 14 12 11 16 16 Si 1.86797 * 120.00253 * 185.01809 * 14 12 11 17 17 H 1.48493 * 109.47083 * 94.99649 * 16 14 12 18 18 H 1.48505 * 109.46920 * 214.99453 * 16 14 12 19 19 H 1.48498 * 109.47259 * 334.99235 * 16 14 12 20 20 C 1.47581 * 91.04871 * 24.54799 * 11 10 9 21 21 H 1.09004 * 109.46415 * 59.99624 * 1 2 3 22 22 H 1.08993 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46524 * 300.00342 * 1 2 3 24 24 H 1.09007 * 109.46934 * 240.00058 * 2 1 3 25 25 H 1.08998 * 109.47097 * 120.00476 * 2 1 3 26 26 H 1.09006 * 109.47053 * 95.88367 * 4 3 2 27 27 H 1.09002 * 109.46991 * 215.88082 * 4 3 2 28 28 H 1.08999 * 109.47379 * 335.87904 * 4 3 2 29 29 H 1.08003 * 119.99605 * 8.34212 * 5 3 2 30 30 H 0.96991 * 120.00607 * 359.97438 * 8 6 5 31 31 H 1.08999 * 112.94725 * 25.34067 * 9 8 6 32 32 H 1.08997 * 113.77023 * 336.35897 * 10 9 8 33 33 H 1.09009 * 113.76780 * 107.74789 * 10 9 8 34 34 H 0.97001 * 119.99705 * 180.02562 * 15 14 12 35 35 H 1.09006 * 113.76982 * 221.15183 * 20 11 10 36 36 H 1.09004 * 113.76898 * 89.75926 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3488 2.0142 1.1474 6 6 2.6623 3.4513 1.1701 7 8 2.5750 4.1089 0.1509 8 7 3.0463 4.0390 2.3206 9 6 3.3581 5.4703 2.3434 10 6 4.8633 5.7752 2.4486 11 7 4.4785 6.8269 3.4133 12 6 5.0506 7.9974 3.8349 13 1 4.5119 8.6510 4.5049 14 6 6.3228 8.3439 3.4011 15 7 6.9394 7.5985 2.5086 16 14 7.1596 9.8680 4.0838 17 1 8.0366 9.4845 5.2192 18 1 7.9775 10.5025 3.0191 19 1 6.1302 10.8285 4.5559 20 6 3.2296 6.1105 3.7376 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.2857 2.7735 -1.4721 27 1 3.0515 2.8171 -1.2514 28 1 2.2961 1.4578 -2.1175 29 1 2.3754 1.4411 2.0624 30 1 3.1155 3.5146 3.1336 31 1 2.8512 6.0282 1.5561 32 1 5.4457 4.9662 2.8897 33 1 5.2990 6.1610 1.5268 34 1 7.8286 7.8404 2.2056 35 1 2.3632 6.7634 3.8431 36 1 3.3310 5.4002 4.5582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732099549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:21 Heat of formation + Delta-G solvation = 2.773182 kcal Electronic energy + Delta-G solvation = -16607.183064 eV Core-core repulsion = 13899.393539 eV Total energy + Delta-G solvation = -2707.789525 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02613 -39.39476 -36.97607 -35.09818 -33.75674 -31.75412 -29.72409 -28.44227 -26.63767 -25.53307 -24.44858 -22.00681 -21.37080 -19.38839 -18.79036 -17.98552 -17.09160 -16.92655 -15.99544 -15.81233 -15.51537 -15.20350 -14.79477 -14.57952 -14.09068 -13.70904 -13.37646 -13.29955 -13.20928 -12.97769 -12.81248 -12.64041 -12.54336 -12.24928 -12.21871 -11.94367 -11.70222 -11.52298 -10.91538 -10.50226 -10.18499 -9.72695 -8.98670 -7.94611 -5.29706 0.45980 1.44634 1.47281 1.56533 2.27786 2.37057 2.52366 3.22934 3.39434 3.79956 3.86101 3.94271 4.21779 4.35599 4.41777 4.49505 4.52667 4.69143 4.73502 4.81108 4.86928 4.89319 5.08388 5.13033 5.16783 5.19981 5.25280 5.40560 5.45758 5.60931 5.69068 5.75436 5.87281 6.73959 6.85958 7.40268 7.55905 8.49850 9.22810 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064158 B = 0.004244 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.314843 B = 6596.255673 C = 6796.749860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.026 4.026 4 C -0.124 4.124 5 C -0.237 4.237 6 C 0.532 3.468 7 O -0.586 6.586 8 N -0.703 5.703 9 C 0.121 3.879 10 C 0.154 3.846 11 N -0.640 5.640 12 C -0.238 4.238 13 H 0.091 0.909 14 C -0.069 4.069 15 N -0.955 5.955 16 Si 0.984 3.016 17 H -0.285 1.285 18 H -0.296 1.296 19 H -0.263 1.263 20 C 0.122 3.878 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.414 0.586 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.028 0.972 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 -16.873 -1.717 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.028 4.028 4 C -0.180 4.180 5 C -0.258 4.258 6 C 0.324 3.676 7 O -0.468 6.468 8 N -0.354 5.354 9 C 0.014 3.986 10 C 0.028 3.972 11 N -0.367 5.367 12 C -0.366 4.366 13 H 0.109 0.891 14 C -0.262 4.262 15 N -0.603 5.603 16 Si 0.812 3.188 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.188 1.188 20 C -0.003 4.003 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.174 0.826 30 H 0.251 0.749 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.147 -16.150 -2.376 20.347 hybrid contribution 1.061 0.895 0.569 1.500 sum -11.086 -15.255 -1.807 18.944 Atomic orbital electron populations 1.21715 0.93507 1.02953 1.02057 1.20812 0.96870 0.90484 1.04651 1.22834 0.88781 0.96807 0.94419 1.21073 1.02679 0.99511 0.94725 1.22489 1.10287 0.92127 1.00880 1.19299 0.75987 0.89564 0.82726 1.90741 1.55174 1.67125 1.33809 1.45803 1.67992 1.09453 1.12131 1.23104 0.95807 0.81100 0.98559 1.22547 0.93260 0.88886 0.92550 1.46051 1.22464 1.20254 1.47915 1.19459 0.97964 0.95516 1.23672 0.89129 1.25766 0.97763 1.02681 1.00034 1.70065 1.14437 1.41730 1.34089 0.84979 0.78342 0.78488 0.77037 1.21153 1.22264 1.18773 1.23012 0.89401 0.93719 0.94204 0.92950 0.90296 0.92780 0.89399 0.89130 0.91571 0.92247 0.90562 0.82557 0.74907 0.89252 0.95704 0.95352 0.94233 0.91781 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.90 71.98 0.71 -0.99 16 2 C -0.09 -1.17 6.10 29.85 0.18 -0.99 16 3 C -0.03 -0.55 5.36 -17.62 -0.09 -0.64 16 4 C -0.12 -3.04 8.47 71.24 0.60 -2.44 16 5 C -0.24 -5.42 9.62 23.43 0.23 -5.19 16 6 C 0.53 17.28 7.64 86.57 0.66 17.94 16 7 O -0.59 -23.83 12.87 -4.06 -0.05 -23.88 16 8 N -0.70 -22.00 5.37 -450.98 -2.42 -24.42 16 9 C 0.12 4.88 4.40 46.74 0.21 5.09 16 10 C 0.15 7.84 7.26 86.44 0.63 8.47 16 11 N -0.64 -33.82 3.70 -716.61 -2.65 -36.47 16 12 C -0.24 -13.66 10.70 84.03 0.90 -12.76 16 13 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 14 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 15 N -0.95 -59.96 11.48 21.65 0.25 -59.72 16 16 Si 0.98 46.58 29.56 68.60 2.03 48.60 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 C 0.12 4.82 8.69 86.49 0.75 5.57 16 21 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 0.94 8.07 -2.38 -0.02 0.93 16 25 H 0.09 0.91 7.99 -2.39 -0.02 0.89 16 26 H 0.07 1.75 8.03 -2.38 -0.02 1.73 16 27 H 0.06 1.89 6.16 -2.39 -0.01 1.88 16 28 H 0.08 1.43 8.03 -2.39 -0.02 1.42 16 29 H 0.16 2.45 7.99 -2.91 -0.02 2.43 16 30 H 0.41 9.93 8.69 -92.71 -0.81 9.12 16 31 H 0.09 4.00 7.51 -2.39 -0.02 3.99 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.03 1.67 7.31 -2.38 -0.02 1.65 16 34 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.07 2.25 8.11 -2.38 -0.02 2.23 16 Total: -1.00 -73.85 302.67 2.65 -71.21 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.25 Total: 14.21 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 5.24 Total: 10.46 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -4.83 Total: -120.60 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.85 2.65 -71.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732099549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.983 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds