Wall clock time and date at job start Sun Mar 29 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.47065 * 2 1 4 4 C 1.50699 * 119.99947 * 265.32344 * 3 2 1 5 5 C 1.33000 * 119.99893 * 85.32052 * 3 2 1 6 6 C 1.47101 * 120.00050 * 353.24186 * 5 3 2 7 7 O 1.21617 * 119.99815 * 353.44957 * 6 5 3 8 8 N 1.34774 * 119.99850 * 173.44985 * 6 5 3 9 9 C 1.46504 * 119.99675 * 180.02562 * 8 6 5 10 10 C 1.53949 * 113.73786 * 253.73732 * 9 8 6 11 11 N 1.47819 * 86.03446 * 222.08626 * 10 9 8 12 12 C 1.36935 * 134.45298 * 204.64191 * 11 10 9 13 13 H 1.08002 * 119.99880 * 179.86886 * 12 11 10 14 14 C 1.38814 * 120.00015 * 359.87583 * 12 11 10 15 15 N 1.31609 * 120.00090 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99585 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 59.99937 * 16 14 12 18 18 H 1.48503 * 109.46898 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47526 * 299.99472 * 16 14 12 20 20 C 1.47580 * 91.05198 * 24.55063 * 11 10 9 21 21 H 1.08998 * 109.46959 * 299.99774 * 1 2 3 22 22 H 1.08998 * 109.47229 * 60.00170 * 1 2 3 23 23 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46959 * 240.00226 * 2 1 3 25 25 H 1.08998 * 109.47229 * 119.99830 * 2 1 3 26 26 H 1.09002 * 109.47435 * 89.99773 * 4 3 2 27 27 H 1.08998 * 109.46880 * 210.00011 * 4 3 2 28 28 H 1.08999 * 109.46885 * 329.99365 * 4 3 2 29 29 H 1.07994 * 119.99547 * 173.24143 * 5 3 2 30 30 H 0.96993 * 119.99916 * 359.97438 * 8 6 5 31 31 H 1.09001 * 112.94592 * 25.33089 * 9 8 6 32 32 H 1.09001 * 113.77203 * 336.34954 * 10 9 8 33 33 H 1.09001 * 113.76714 * 107.74707 * 10 9 8 34 34 H 0.97011 * 120.00000 * 180.02562 * 15 14 12 35 35 H 1.08993 * 113.76776 * 221.15172 * 20 11 10 36 36 H 1.08996 * 113.76890 * 89.75158 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3838 2.0958 -1.3008 5 6 2.1654 2.0791 1.1480 6 6 1.6843 1.4772 2.4010 7 8 1.0595 0.4342 2.3739 8 7 1.9360 2.0817 3.5790 9 6 1.4573 1.4819 4.8270 10 6 0.2585 2.2204 5.4497 11 7 0.9422 2.0245 6.7455 12 6 0.5271 1.9612 8.0489 13 1 1.2474 1.8029 8.8379 14 6 -0.8195 2.1003 8.3560 15 7 -1.6971 2.2936 7.3945 16 14 -1.3857 2.0133 10.1340 17 1 -0.7261 3.0891 10.9168 18 1 -2.8589 2.1905 10.1935 19 1 -1.0224 0.6916 10.7051 20 6 2.2507 1.9223 6.0706 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.5029 2.5999 -1.6982 27 1 3.1741 2.8265 -1.1289 28 1 2.7288 1.3490 -2.0159 29 1 2.6267 3.0555 1.1601 30 1 2.4346 2.9133 3.6006 31 1 1.3185 0.4032 4.7543 32 1 0.1807 3.2648 5.1475 33 1 -0.6839 1.6797 5.3627 34 1 -2.6382 2.3912 7.6092 35 1 2.8957 1.1441 6.4785 36 1 2.7593 2.8789 5.9512 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732099550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:24 Heat of formation + Delta-G solvation = 29.305295 kcal Electronic energy + Delta-G solvation = -16825.863542 eV Core-core repulsion = 14119.224535 eV Total energy + Delta-G solvation = -2706.639007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69033 -37.79284 -35.68622 -33.43823 -31.85079 -30.67229 -28.36817 -27.08663 -24.79388 -23.83040 -22.97105 -20.81660 -19.66740 -18.20049 -16.85176 -16.70060 -15.56335 -14.99834 -14.74242 -14.50830 -13.94755 -13.81007 -13.59319 -12.87385 -12.72440 -12.51875 -12.39089 -11.84870 -11.78746 -11.43338 -11.40775 -10.96121 -10.83859 -10.81855 -10.63815 -10.29544 -10.01068 -9.51546 -9.17308 -9.07634 -8.79050 -8.26877 -6.90239 -5.75695 -3.09708 1.49557 3.40804 3.44236 3.46433 3.60349 3.68403 4.47673 4.74406 4.82742 5.14513 5.24360 5.36215 5.43716 5.48624 5.50170 5.61789 5.69331 5.70570 5.75603 6.01437 6.09462 6.23109 6.31094 6.44939 6.46285 6.54244 6.62975 6.70751 6.89310 7.26208 7.41886 7.58653 7.97582 8.02377 8.69841 9.04199 9.70632 10.57872 11.40982 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050229 B = 0.004684 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.314420 B = 5976.390338 C = 6246.342229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.040 4.040 4 C -0.124 4.124 5 C -0.226 4.226 6 C 0.538 3.462 7 O -0.538 6.538 8 N -0.714 5.714 9 C 0.093 3.907 10 C 0.154 3.846 11 N -0.608 5.608 12 C -0.227 4.227 13 H 0.081 0.919 14 C -0.006 4.006 15 N -0.919 5.919 16 Si 0.914 3.086 17 H -0.285 1.285 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.112 3.888 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.395 0.605 31 H 0.110 0.890 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.255 0.745 35 H 0.048 0.952 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 0.232 -15.593 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.042 4.042 4 C -0.180 4.180 5 C -0.247 4.247 6 C 0.327 3.673 7 O -0.418 6.418 8 N -0.363 5.363 9 C -0.012 4.012 10 C 0.028 3.972 11 N -0.334 5.334 12 C -0.354 4.354 13 H 0.099 0.901 14 C -0.203 4.203 15 N -0.565 5.565 16 Si 0.744 3.256 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.015 4.015 21 H 0.093 0.907 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.229 0.771 31 H 0.127 0.873 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.977 -0.510 -15.306 17.268 hybrid contribution -0.048 0.739 1.026 1.265 sum 7.929 0.229 -14.280 16.335 Atomic orbital electron populations 1.21616 0.94146 1.01674 1.01774 1.20853 0.97297 0.92316 1.02647 1.22519 0.91503 0.95915 0.94217 1.20977 1.01990 1.00470 0.94601 1.22480 1.07660 1.01780 0.92775 1.18542 0.80065 0.84549 0.84115 1.90735 1.40624 1.23318 1.87132 1.46061 1.56953 1.26814 1.06479 1.23833 0.97650 0.99457 0.80240 1.22706 0.95582 0.96312 0.82588 1.45722 1.01290 1.84166 1.02255 1.18945 0.91877 1.43318 0.81305 0.90133 1.24811 0.95697 1.01949 0.97797 1.69823 1.01470 1.54815 1.30435 0.86174 0.77575 0.77950 0.83888 1.21154 1.21506 1.20974 1.22867 0.90845 0.97572 0.90212 0.90691 0.94245 0.92985 0.92740 0.88589 0.90458 0.91372 0.91370 0.85991 0.77127 0.87251 0.95471 0.90585 0.93492 0.93341 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.32 37.16 0.35 -1.44 16 2 C -0.09 -1.17 5.35 -27.88 -0.15 -1.32 16 3 C -0.04 -0.45 5.36 -101.16 -0.54 -0.99 16 4 C -0.12 -0.98 10.04 36.01 0.36 -0.62 16 5 C -0.23 -2.78 9.63 -37.80 -0.36 -3.15 16 6 C 0.54 8.66 7.59 -12.67 -0.10 8.56 16 7 O -0.54 -10.24 10.70 5.26 0.06 -10.18 16 8 N -0.71 -11.37 5.37 -56.52 -0.30 -11.67 16 9 C 0.09 1.86 4.40 -70.13 -0.31 1.55 16 10 C 0.15 3.78 7.33 -2.83 -0.02 3.76 16 11 N -0.61 -15.91 3.70 -177.86 -0.66 -16.57 16 12 C -0.23 -6.48 10.70 -15.06 -0.16 -6.64 16 13 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 15 N -0.92 -27.89 11.39 55.49 0.63 -27.26 16 16 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.11 2.29 8.69 -2.96 -0.03 2.26 16 21 H 0.07 1.21 6.19 -51.93 -0.32 0.89 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.56 7.99 -51.93 -0.41 0.15 16 25 H 0.10 1.43 6.06 -51.93 -0.31 1.11 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 28 H 0.07 0.47 8.00 -51.93 -0.42 0.05 16 29 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 30 H 0.40 5.16 8.69 -40.82 -0.35 4.80 16 31 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 2.11 7.17 -51.93 -0.37 1.74 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -32.45 298.60 -7.36 -39.81 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.50 Total: 2.29 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.06 Total: 1.72 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.33 Total: -55.50 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.45 -7.36 -39.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732099550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.112 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds