Wall clock time and date at job start Sun Mar 29 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.47065 * 2 1 4 4 C 1.50699 * 119.99947 * 265.32344 * 3 2 1 5 5 C 1.33000 * 119.99893 * 85.32052 * 3 2 1 6 6 C 1.47101 * 120.00050 * 353.24186 * 5 3 2 7 7 O 1.21617 * 119.99815 * 353.44957 * 6 5 3 8 8 N 1.34774 * 119.99850 * 173.44985 * 6 5 3 9 9 C 1.46504 * 119.99675 * 180.02562 * 8 6 5 10 10 C 1.53949 * 113.73786 * 253.73732 * 9 8 6 11 11 N 1.47819 * 86.03446 * 222.08626 * 10 9 8 12 12 C 1.36935 * 134.45298 * 204.64191 * 11 10 9 13 13 H 1.08002 * 119.99880 * 179.86886 * 12 11 10 14 14 C 1.38814 * 120.00015 * 359.87583 * 12 11 10 15 15 N 1.31609 * 120.00090 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99585 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 59.99937 * 16 14 12 18 18 H 1.48503 * 109.46898 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47526 * 299.99472 * 16 14 12 20 20 C 1.47580 * 91.05198 * 24.55063 * 11 10 9 21 21 H 1.08998 * 109.46959 * 299.99774 * 1 2 3 22 22 H 1.08998 * 109.47229 * 60.00170 * 1 2 3 23 23 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46959 * 240.00226 * 2 1 3 25 25 H 1.08998 * 109.47229 * 119.99830 * 2 1 3 26 26 H 1.09002 * 109.47435 * 89.99773 * 4 3 2 27 27 H 1.08998 * 109.46880 * 210.00011 * 4 3 2 28 28 H 1.08999 * 109.46885 * 329.99365 * 4 3 2 29 29 H 1.07994 * 119.99547 * 173.24143 * 5 3 2 30 30 H 0.96993 * 119.99916 * 359.97438 * 8 6 5 31 31 H 1.09001 * 112.94592 * 25.33089 * 9 8 6 32 32 H 1.09001 * 113.77203 * 336.34954 * 10 9 8 33 33 H 1.09001 * 113.76714 * 107.74707 * 10 9 8 34 34 H 0.97011 * 120.00000 * 180.02562 * 15 14 12 35 35 H 1.08993 * 113.76776 * 221.15172 * 20 11 10 36 36 H 1.08996 * 113.76890 * 89.75158 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3838 2.0958 -1.3008 5 6 2.1654 2.0791 1.1480 6 6 1.6843 1.4772 2.4010 7 8 1.0595 0.4342 2.3739 8 7 1.9360 2.0817 3.5790 9 6 1.4573 1.4819 4.8270 10 6 0.2585 2.2204 5.4497 11 7 0.9422 2.0245 6.7455 12 6 0.5271 1.9612 8.0489 13 1 1.2474 1.8029 8.8379 14 6 -0.8195 2.1003 8.3560 15 7 -1.6971 2.2936 7.3945 16 14 -1.3857 2.0133 10.1340 17 1 -0.7261 3.0891 10.9168 18 1 -2.8589 2.1905 10.1935 19 1 -1.0224 0.6916 10.7051 20 6 2.2507 1.9223 6.0706 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.5029 2.5999 -1.6982 27 1 3.1741 2.8265 -1.1289 28 1 2.7288 1.3490 -2.0159 29 1 2.6267 3.0555 1.1601 30 1 2.4346 2.9133 3.6006 31 1 1.3185 0.4032 4.7543 32 1 0.1807 3.2648 5.1475 33 1 -0.6839 1.6797 5.3627 34 1 -2.6382 2.3912 7.6092 35 1 2.8957 1.1441 6.4785 36 1 2.7593 2.8789 5.9512 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732099550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:23 Heat of formation + Delta-G solvation = 7.232156 kcal Electronic energy + Delta-G solvation = -16826.820705 eV Core-core repulsion = 14119.224535 eV Total energy + Delta-G solvation = -2707.596170 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05063 -39.43522 -36.76738 -35.05034 -33.77419 -31.70577 -29.75356 -28.55543 -26.62744 -25.25689 -24.39240 -22.18952 -21.34307 -19.35463 -18.79232 -17.98533 -17.07068 -16.91707 -16.00661 -15.79858 -15.62121 -15.20311 -14.60932 -14.38850 -13.79996 -13.61837 -13.53015 -13.30770 -13.20774 -13.06658 -12.78562 -12.77059 -12.63348 -12.33389 -11.99341 -11.85324 -11.65875 -11.46436 -10.89263 -10.46599 -10.08960 -9.68758 -8.98836 -7.92922 -5.28801 0.50253 1.44588 1.49154 1.55283 2.30173 2.40185 2.53579 3.25188 3.39821 3.86950 3.87546 3.91729 4.23825 4.37883 4.52858 4.54812 4.59917 4.71859 4.73431 4.75320 4.89269 4.89673 5.03804 5.15503 5.17893 5.22416 5.34420 5.46340 5.48461 5.58577 5.74869 5.80358 5.88719 6.77217 6.86599 7.45017 7.56841 8.50325 9.23790 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050229 B = 0.004684 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.314420 B = 5976.390338 C = 6246.342229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.027 4.027 4 C -0.121 4.121 5 C -0.240 4.240 6 C 0.530 3.470 7 O -0.574 6.574 8 N -0.705 5.705 9 C 0.123 3.877 10 C 0.153 3.847 11 N -0.639 5.639 12 C -0.239 4.239 13 H 0.091 0.909 14 C -0.069 4.069 15 N -0.956 5.956 16 Si 0.985 3.015 17 H -0.273 1.273 18 H -0.295 1.295 19 H -0.275 1.275 20 C 0.122 3.878 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.413 0.587 31 H 0.089 0.911 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 1.043 -16.814 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 C -0.029 4.029 4 C -0.177 4.177 5 C -0.260 4.260 6 C 0.321 3.679 7 O -0.457 6.457 8 N -0.356 5.356 9 C 0.016 3.984 10 C 0.026 3.974 11 N -0.367 5.367 12 C -0.368 4.368 13 H 0.108 0.892 14 C -0.261 4.261 15 N -0.605 5.605 16 Si 0.812 3.188 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.200 1.200 20 C -0.004 4.004 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.173 0.827 30 H 0.250 0.750 31 H 0.107 0.893 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.026 0.322 -16.550 19.353 hybrid contribution -0.637 0.429 1.297 1.507 sum 9.389 0.751 -15.253 17.927 Atomic orbital electron populations 1.21548 0.94964 1.01405 1.00979 1.20846 0.96593 0.93580 1.02516 1.22862 0.89338 0.95028 0.95664 1.21050 1.03021 1.01062 0.92554 1.22490 1.09375 1.03317 0.90844 1.19293 0.79317 0.84091 0.85156 1.90740 1.42168 1.25088 1.87672 1.45816 1.57068 1.27512 1.05168 1.23056 0.95306 0.97796 0.82195 1.22584 0.95393 0.95945 0.83478 1.46065 1.04121 1.84446 1.02037 1.19430 0.92379 1.42123 0.82824 0.89176 1.25736 0.95914 1.02391 1.02106 1.70045 1.01290 1.56596 1.32562 0.85069 0.76495 0.78415 0.78843 1.19861 1.22135 1.20031 1.23006 0.89152 0.99269 0.88938 0.94227 0.92068 0.93134 0.90063 0.91512 0.89387 0.89554 0.89873 0.82743 0.75042 0.89273 0.95868 0.95103 0.94250 0.91860 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.32 71.98 0.67 -2.78 16 2 C -0.10 -2.33 5.35 29.85 0.16 -2.17 16 3 C -0.03 -0.54 5.36 -17.61 -0.09 -0.64 16 4 C -0.12 -1.40 10.04 71.24 0.72 -0.68 16 5 C -0.24 -5.38 9.63 23.43 0.23 -5.16 16 6 C 0.53 16.89 7.59 86.57 0.66 17.55 16 7 O -0.57 -22.60 10.70 -4.08 -0.04 -22.65 16 8 N -0.70 -21.90 5.37 -450.97 -2.42 -24.32 16 9 C 0.12 4.96 4.40 46.75 0.21 5.16 16 10 C 0.15 7.75 7.33 86.44 0.63 8.39 16 11 N -0.64 -33.83 3.70 -716.64 -2.65 -36.48 16 12 C -0.24 -13.76 10.70 84.03 0.90 -12.86 16 13 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 14 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 15 N -0.96 -60.15 11.39 21.65 0.25 -59.91 16 16 Si 0.98 46.61 29.55 68.60 2.03 48.63 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.12 4.82 8.69 86.49 0.75 5.57 16 21 H 0.04 1.32 6.19 -2.39 -0.01 1.30 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.08 1.47 7.99 -2.39 -0.02 1.46 16 25 H 0.07 2.01 6.06 -2.39 -0.01 1.99 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 28 H 0.08 0.76 8.00 -2.39 -0.02 0.74 16 29 H 0.16 2.41 8.04 -2.91 -0.02 2.39 16 30 H 0.41 9.90 8.69 -92.71 -0.81 9.10 16 31 H 0.09 3.99 7.51 -2.39 -0.02 3.97 16 32 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.03 1.82 7.17 -2.39 -0.02 1.80 16 34 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -73.45 298.60 2.71 -70.74 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.26 Total: 15.17 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.29 Total: 8.81 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -4.83 Total: -120.71 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.45 2.71 -70.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732099550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.972 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds