Wall clock time and date at job start Sun Mar 29 2020 22:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50694 * 120.00045 * 2 1 4 4 C 1.32994 * 119.99548 * 180.02562 * 2 1 3 5 5 C 1.47100 * 120.00300 * 359.97438 * 4 2 1 6 6 O 1.21609 * 120.00060 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99888 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99823 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74237 * 86.25986 * 9 8 7 11 11 N 1.47805 * 86.03824 * 90.88049 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47116 * 59.99643 * 16 14 12 18 18 H 1.48494 * 109.47098 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46650 * 300.00031 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08998 * 109.47486 * 239.99617 * 1 2 3 22 22 H 1.08996 * 109.47023 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47130 * 119.99783 * 1 2 3 24 24 H 1.09000 * 109.47742 * 269.99762 * 3 2 1 25 25 H 1.08997 * 109.47245 * 30.00491 * 3 2 1 26 26 H 1.09001 * 109.47269 * 149.99949 * 3 2 1 27 27 H 1.08004 * 119.99622 * 180.02562 * 4 2 1 28 28 H 0.97000 * 120.00410 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47568 * 60.00247 * 8 7 5 30 30 H 1.08998 * 109.47248 * 299.99470 * 8 7 5 31 31 H 1.09002 * 112.94408 * 314.66403 * 9 8 7 32 32 H 1.08999 * 113.76704 * 205.14826 * 10 9 8 33 33 H 1.09002 * 113.76463 * 336.53620 * 10 9 8 34 34 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 36 36 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1103 -3.5929 -0.0005 8 6 1.3777 -4.8617 -0.0011 9 6 2.3720 -6.0246 -0.0003 10 6 2.8436 -6.4360 1.4063 11 7 1.7070 -7.3809 1.3992 12 6 0.9558 -7.9849 2.3719 13 1 0.1540 -8.6543 2.0972 14 6 1.2249 -7.7367 3.7109 15 7 2.2017 -6.9205 4.0455 16 14 0.2007 -8.5611 5.0378 17 1 0.3247 -10.0358 4.9142 18 1 0.6863 -8.1343 6.3746 19 1 -1.2228 -8.1691 4.8793 20 6 1.7052 -7.4101 -0.0764 21 1 -0.3634 -0.5139 0.8899 22 1 -0.3633 1.0276 0.0005 23 1 -0.3634 -0.5138 -0.8901 24 1 2.4423 1.6198 -1.0276 25 1 1.6715 2.0647 0.5139 26 1 3.2130 1.1747 0.5138 27 1 3.2520 -1.1518 -0.0001 28 1 3.0803 -3.5930 -0.0001 29 1 0.7514 -4.9193 -0.8913 30 1 0.7508 -4.9196 0.8887 31 1 3.1850 -5.8890 -0.7136 32 1 3.8191 -6.9222 1.4178 33 1 2.7531 -5.6435 2.1492 34 1 2.3900 -6.7474 4.9812 35 1 0.7075 -7.3940 -0.5149 36 1 2.3457 -8.1831 -0.5012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732120109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:42 Heat of formation + Delta-G solvation = 25.380917 kcal Electronic energy + Delta-G solvation = -16737.150822 eV Core-core repulsion = 14030.341642 eV Total energy + Delta-G solvation = -2706.809180 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55679 -38.04052 -35.49728 -34.01315 -32.10782 -29.12460 -27.89243 -27.52843 -25.50276 -24.75021 -22.35691 -20.81537 -19.23427 -18.03161 -16.73885 -16.61583 -15.60661 -15.11532 -14.73368 -14.27137 -14.18476 -13.81174 -13.65246 -13.27511 -12.63435 -12.50500 -12.36311 -12.12222 -11.74358 -11.57182 -11.37707 -11.06382 -10.95852 -10.66516 -10.48184 -9.87237 -9.71711 -9.43341 -9.26723 -9.15522 -8.75305 -8.48052 -6.83465 -5.72202 -3.04030 1.48522 3.43505 3.47369 3.48455 3.55944 3.64679 4.50431 4.77141 4.82231 5.20323 5.26698 5.34422 5.39154 5.40382 5.46368 5.62823 5.68102 5.70876 5.92836 6.03850 6.14128 6.20557 6.37158 6.50928 6.52724 6.60774 6.67823 6.76230 6.92106 7.23107 7.35478 7.60562 7.93598 8.02911 8.61949 9.09256 9.75831 10.64691 11.45001 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.005224 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.492229 B = 5359.058860 C = 5791.768028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 C -0.125 4.125 4 C -0.229 4.229 5 C 0.539 3.461 6 O -0.547 6.547 7 N -0.719 5.719 8 C 0.150 3.850 9 C -0.155 4.155 10 C 0.166 3.834 11 N -0.611 5.611 12 C -0.223 4.223 13 H 0.079 0.921 14 C -0.007 4.007 15 N -0.922 5.922 16 Si 0.910 3.090 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.127 3.873 21 H 0.083 0.917 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.045 0.955 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 13.019 -9.741 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.181 4.181 4 C -0.250 4.250 5 C 0.329 3.671 6 O -0.427 6.427 7 N -0.369 5.369 8 C 0.026 3.974 9 C -0.175 4.175 10 C 0.040 3.960 11 N -0.338 5.338 12 C -0.351 4.351 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.570 5.570 16 Si 0.741 3.259 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.000 4.000 21 H 0.102 0.898 22 H 0.067 0.933 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.231 0.769 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.903 12.911 -9.396 16.081 hybrid contribution 0.258 -0.712 0.828 1.122 sum 2.161 12.199 -8.568 15.063 Atomic orbital electron populations 1.21026 0.90855 1.00649 1.04563 1.22523 0.96926 0.94371 0.90671 1.20992 1.00068 0.94444 1.02609 1.22435 0.99959 0.92237 1.10373 1.18503 0.87450 0.84324 0.76848 1.90763 1.13773 1.87768 1.50430 1.45924 1.10234 1.06043 1.74723 1.21032 0.93823 0.80251 1.02249 1.23449 0.98085 0.95139 1.00822 1.22352 0.90030 0.92610 0.90993 1.46033 1.35160 1.53227 0.99344 1.18988 1.09375 1.21431 0.85277 0.90364 1.24751 0.98683 1.00129 0.96801 1.69798 1.31780 1.39097 1.16303 0.86222 0.79646 0.78870 0.81183 1.21247 1.21587 1.21052 1.22522 0.97604 0.92506 0.87360 0.89810 0.93318 0.90051 0.90587 0.91135 0.91213 0.85862 0.76878 0.92455 0.90115 0.91632 0.95634 0.90690 0.93686 0.93676 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.33 36.01 0.30 -1.13 16 2 C -0.04 -0.49 6.11 -101.17 -0.62 -1.11 16 3 C -0.12 -0.98 9.98 36.00 0.36 -0.62 16 4 C -0.23 -2.89 9.63 -37.81 -0.36 -3.26 16 5 C 0.54 8.88 7.73 -12.66 -0.10 8.78 16 6 O -0.55 -10.76 13.07 5.27 0.07 -10.69 16 7 N -0.72 -11.34 5.55 -61.49 -0.34 -11.68 16 8 C 0.15 2.76 5.42 -4.04 -0.02 2.74 16 9 C -0.16 -2.84 3.99 -89.69 -0.36 -3.20 16 10 C 0.17 3.85 7.03 -2.84 -0.02 3.83 16 11 N -0.61 -15.81 3.59 -177.69 -0.64 -16.45 16 12 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 13 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.92 -27.79 11.39 55.49 0.63 -27.16 16 16 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 20 C 0.13 2.59 8.51 -2.96 -0.03 2.57 16 21 H 0.08 1.23 7.22 -51.93 -0.37 0.86 16 22 H 0.05 0.48 7.94 -51.93 -0.41 0.06 16 23 H 0.08 1.12 7.22 -51.93 -0.37 0.75 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 26 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 27 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.40 5.16 8.46 -40.82 -0.35 4.81 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.85 7.98 -51.93 -0.41 1.43 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.94 7.12 -51.93 -0.37 1.57 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -33.11 302.46 -7.48 -40.59 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.63 Total: 1.45 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.10 Total: 1.73 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.35 Total: -55.29 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.11 -7.48 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732120109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.970 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds