Wall clock time and date at job start Sun Mar 29 2020 22:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50694 * 120.00045 * 2 1 4 4 C 1.32994 * 119.99548 * 180.02562 * 2 1 3 5 5 C 1.47100 * 120.00300 * 359.97438 * 4 2 1 6 6 O 1.21609 * 120.00060 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99888 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99823 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74237 * 86.25986 * 9 8 7 11 11 N 1.47805 * 86.03824 * 90.88049 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47116 * 59.99643 * 16 14 12 18 18 H 1.48494 * 109.47098 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46650 * 300.00031 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08998 * 109.47486 * 239.99617 * 1 2 3 22 22 H 1.08996 * 109.47023 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47130 * 119.99783 * 1 2 3 24 24 H 1.09000 * 109.47742 * 269.99762 * 3 2 1 25 25 H 1.08997 * 109.47245 * 30.00491 * 3 2 1 26 26 H 1.09001 * 109.47269 * 149.99949 * 3 2 1 27 27 H 1.08004 * 119.99622 * 180.02562 * 4 2 1 28 28 H 0.97000 * 120.00410 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47568 * 60.00247 * 8 7 5 30 30 H 1.08998 * 109.47248 * 299.99470 * 8 7 5 31 31 H 1.09002 * 112.94408 * 314.66403 * 9 8 7 32 32 H 1.08999 * 113.76704 * 205.14826 * 10 9 8 33 33 H 1.09002 * 113.76463 * 336.53620 * 10 9 8 34 34 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 36 36 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1103 -3.5929 -0.0005 8 6 1.3777 -4.8617 -0.0011 9 6 2.3720 -6.0246 -0.0003 10 6 2.8436 -6.4360 1.4063 11 7 1.7070 -7.3809 1.3992 12 6 0.9558 -7.9849 2.3719 13 1 0.1540 -8.6543 2.0972 14 6 1.2249 -7.7367 3.7109 15 7 2.2017 -6.9205 4.0455 16 14 0.2007 -8.5611 5.0378 17 1 0.3247 -10.0358 4.9142 18 1 0.6863 -8.1343 6.3746 19 1 -1.2228 -8.1691 4.8793 20 6 1.7052 -7.4101 -0.0764 21 1 -0.3634 -0.5139 0.8899 22 1 -0.3633 1.0276 0.0005 23 1 -0.3634 -0.5138 -0.8901 24 1 2.4423 1.6198 -1.0276 25 1 1.6715 2.0647 0.5139 26 1 3.2130 1.1747 0.5138 27 1 3.2520 -1.1518 -0.0001 28 1 3.0803 -3.5930 -0.0001 29 1 0.7514 -4.9193 -0.8913 30 1 0.7508 -4.9196 0.8887 31 1 3.1850 -5.8890 -0.7136 32 1 3.8191 -6.9222 1.4178 33 1 2.7531 -5.6435 2.1492 34 1 2.3900 -6.7474 4.9812 35 1 0.7075 -7.3940 -0.5149 36 1 2.3457 -8.1831 -0.5012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732120109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:41 Heat of formation + Delta-G solvation = 2.598547 kcal Electronic energy + Delta-G solvation = -16738.138740 eV Core-core repulsion = 14030.341642 eV Total energy + Delta-G solvation = -2707.797098 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89834 -39.70713 -36.52590 -35.45759 -34.16056 -30.70419 -29.09570 -28.59554 -27.10098 -26.50980 -24.21409 -22.07789 -20.71965 -19.35340 -18.71055 -17.82060 -17.05125 -16.91663 -16.30863 -15.72376 -15.58854 -15.11930 -14.86743 -14.54315 -14.39507 -13.88706 -13.35021 -13.28920 -13.18753 -12.90159 -12.83482 -12.62918 -12.54153 -12.36972 -12.27200 -11.81424 -11.49628 -11.28116 -10.87242 -10.57054 -10.25355 -9.75451 -8.89415 -7.90433 -5.22099 0.47002 1.42568 1.46295 1.51910 2.31176 2.41684 2.47406 3.30730 3.44832 3.71507 3.88290 3.96814 4.00407 4.34106 4.51901 4.60474 4.62814 4.72557 4.77214 4.83683 4.89747 4.94282 5.01609 5.06943 5.11758 5.20676 5.25757 5.49215 5.55681 5.58554 5.65997 5.68517 5.96584 6.71560 6.93303 7.37267 7.62113 8.58112 9.26395 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.005224 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.492229 B = 5359.058860 C = 5791.768028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.032 4.032 3 C -0.121 4.121 4 C -0.245 4.245 5 C 0.529 3.471 6 O -0.590 6.590 7 N -0.712 5.712 8 C 0.162 3.838 9 C -0.120 4.120 10 C 0.162 3.838 11 N -0.644 5.644 12 C -0.235 4.235 13 H 0.080 0.920 14 C -0.067 4.067 15 N -0.953 5.953 16 Si 0.974 3.026 17 H -0.275 1.275 18 H -0.293 1.293 19 H -0.280 1.280 20 C 0.125 3.875 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.413 0.587 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.114 0.886 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.247 0.753 35 H 0.053 0.947 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 14.068 -11.111 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.034 4.034 3 C -0.177 4.177 4 C -0.266 4.266 5 C 0.321 3.679 6 O -0.473 6.473 7 N -0.363 5.363 8 C 0.037 3.963 9 C -0.139 4.139 10 C 0.037 3.963 11 N -0.372 5.372 12 C -0.364 4.364 13 H 0.098 0.902 14 C -0.260 4.260 15 N -0.602 5.602 16 Si 0.803 3.197 17 H -0.201 1.201 18 H -0.219 1.219 19 H -0.206 1.206 20 C -0.001 4.001 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.173 0.827 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.897 13.953 -10.807 17.885 hybrid contribution -0.092 -0.997 1.191 1.555 sum 2.805 12.957 -9.617 16.378 Atomic orbital electron populations 1.20979 0.92187 1.01739 1.02332 1.22906 0.96371 0.95940 0.88170 1.21066 1.00217 0.92245 1.04167 1.22498 1.01298 0.90380 1.12398 1.19272 0.87261 0.85626 0.75789 1.90747 1.15753 1.88414 1.52384 1.45801 1.10960 1.05060 1.74487 1.20688 0.93709 0.81823 1.00056 1.23147 0.98477 0.93877 0.98395 1.22295 0.89451 0.91434 0.93160 1.46429 1.35683 1.53593 1.01470 1.19391 1.09674 1.20873 0.86456 0.90203 1.25566 1.00223 1.01280 0.98944 1.69984 1.33503 1.40720 1.16035 0.85214 0.78094 0.78279 0.78161 1.20117 1.21924 1.20647 1.22767 0.98785 0.94197 0.84303 0.92730 0.90431 0.91818 0.88614 0.89946 0.89890 0.82668 0.75011 0.91607 0.95412 0.86816 0.95840 0.94178 0.94413 0.92900 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.33 71.24 0.59 -2.26 16 2 C -0.03 -0.67 6.11 -17.62 -0.11 -0.78 16 3 C -0.12 -1.46 9.98 71.23 0.71 -0.75 16 4 C -0.25 -5.78 9.63 23.43 0.23 -5.56 16 5 C 0.53 17.39 7.73 86.57 0.67 18.06 16 6 O -0.59 -24.02 13.07 -4.06 -0.05 -24.07 16 7 N -0.71 -21.98 5.55 -466.71 -2.59 -24.58 16 8 C 0.16 5.95 5.42 86.38 0.47 6.42 16 9 C -0.12 -4.19 3.99 -10.13 -0.04 -4.23 16 10 C 0.16 7.58 7.03 86.44 0.61 8.19 16 11 N -0.64 -33.59 3.59 -716.10 -2.57 -36.16 16 12 C -0.24 -13.69 10.70 84.03 0.90 -12.79 16 13 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 14 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 15 N -0.95 -59.11 11.39 21.65 0.25 -58.86 16 16 Si 0.97 47.47 29.55 68.60 2.03 49.49 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 C 0.12 4.90 8.51 86.49 0.74 5.64 16 21 H 0.05 1.67 7.22 -2.39 -0.02 1.65 16 22 H 0.08 1.40 7.94 -2.39 -0.02 1.38 16 23 H 0.06 1.79 7.22 -2.38 -0.02 1.78 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.08 0.84 8.05 -2.39 -0.02 0.82 16 26 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 27 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.41 9.97 8.46 -92.71 -0.78 9.19 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.03 1.32 7.98 -2.39 -0.02 1.30 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 2.15 7.12 -2.39 -0.02 2.13 16 34 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.05 1.99 8.10 -2.39 -0.02 1.98 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -75.08 302.46 2.57 -72.51 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.28 Total: 13.23 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.23 Total: 8.44 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -4.91 Total: -119.59 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Total: -75.08 2.57 -72.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732120109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.109 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds