Wall clock time and date at job start Sun Mar 29 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00409 * 2 1 4 4 C 1.32995 * 119.99662 * 179.97438 * 2 1 3 5 5 C 1.47102 * 120.00462 * 2.70731 * 4 2 1 6 6 O 1.21617 * 119.99452 * 5.45644 * 5 4 2 7 7 N 1.34777 * 120.00571 * 185.45566 * 5 4 2 8 8 C 1.46494 * 120.00281 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.77973 * 323.21560 * 8 7 5 10 10 C 1.55401 * 110.69481 * 199.82229 * 8 7 5 11 11 C 1.54912 * 101.66630 * 277.04747 * 10 8 7 12 12 N 1.47422 * 104.83080 * 323.07544 * 11 10 8 13 13 C 1.36939 * 125.64715 * 204.16375 * 12 11 10 14 14 H 1.07995 * 119.99898 * 146.71700 * 13 12 11 15 15 C 1.38816 * 119.99668 * 326.71725 * 13 12 11 16 16 N 1.31615 * 119.99875 * 164.03042 * 15 13 12 17 17 Si 1.86797 * 120.00257 * 344.02341 * 15 13 12 18 18 H 1.48503 * 109.47130 * 86.92013 * 17 15 13 19 19 H 1.48497 * 109.47210 * 206.92022 * 17 15 13 20 20 H 1.48506 * 109.47205 * 326.92285 * 17 15 13 21 21 C 1.47029 * 108.70559 * 24.12962 * 12 11 10 22 22 H 1.09007 * 109.47403 * 236.22548 * 1 2 3 23 23 H 1.09003 * 109.46892 * 356.22694 * 1 2 3 24 24 H 1.08994 * 109.47386 * 116.22852 * 1 2 3 25 25 H 1.08995 * 109.47112 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.46841 * 299.99951 * 3 2 1 27 27 H 1.09000 * 109.47327 * 59.99958 * 3 2 1 28 28 H 1.08006 * 120.00048 * 182.70222 * 4 2 1 29 29 H 0.97003 * 119.99465 * 359.97438 * 7 5 4 30 30 H 1.09004 * 110.89070 * 158.97770 * 10 8 7 31 31 H 1.08999 * 111.03814 * 35.18681 * 10 8 7 32 32 H 1.08996 * 110.36225 * 204.23745 * 11 10 8 33 33 H 1.09005 * 110.45645 * 81.96271 * 11 10 8 34 34 H 0.97003 * 120.00645 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.87905 * 118.35498 * 21 12 11 36 36 H 1.08996 * 109.87954 * 239.36644 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4376 -2.4251 -0.0591 6 8 0.2307 -2.4245 -0.2088 7 7 2.1023 -3.5923 0.0522 8 6 1.3709 -4.8602 -0.0066 9 1 0.4030 -4.7716 0.4866 10 6 2.2094 -6.0075 0.6224 11 6 3.1273 -6.4089 -0.5591 12 7 2.2787 -6.2782 -1.7575 13 6 2.4653 -6.9373 -2.9433 14 1 1.6130 -7.2268 -3.5400 15 6 3.7499 -7.2332 -3.3781 16 7 3.9336 -8.1224 -4.3309 17 14 5.2179 -6.3695 -2.6111 18 1 5.6531 -7.1129 -1.4014 19 1 6.3325 -6.3229 -3.5912 20 1 4.8350 -4.9860 -2.2307 21 6 1.1983 -5.3237 -1.4685 22 1 -0.3634 -0.5713 0.8543 23 1 -0.3633 1.0255 0.0676 24 1 -0.3634 -0.4541 -0.9218 25 1 3.3321 1.1058 -0.0005 26 1 1.9972 1.8765 -0.8900 27 1 1.9973 1.8766 0.8900 28 1 3.2510 -1.1524 0.0446 29 1 3.0650 -3.5927 0.1712 30 1 1.5696 -6.8384 0.9199 31 1 2.7955 -5.6459 1.4673 32 1 3.4652 -7.4387 -0.4440 33 1 3.9816 -5.7349 -0.6238 34 1 4.8313 -8.3290 -4.6351 35 1 1.2704 -4.4680 -2.1397 36 1 0.2309 -5.8106 -1.5913 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732153493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:08 Heat of formation + Delta-G solvation = -1.113851 kcal Electronic energy + Delta-G solvation = -17170.652248 eV Core-core repulsion = 14462.694168 eV Total energy + Delta-G solvation = -2707.958080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78696 -37.69743 -35.39743 -33.80426 -32.02925 -29.71971 -28.46571 -27.85331 -27.20646 -24.23677 -21.70817 -20.77813 -19.79132 -18.68299 -17.06234 -16.76496 -15.73901 -15.24500 -14.86771 -14.49832 -14.06983 -13.82336 -13.69491 -13.29308 -13.00619 -12.49382 -12.34707 -12.16778 -11.83492 -11.69258 -11.63663 -11.39437 -11.07420 -10.90131 -10.86558 -10.28951 -10.04240 -9.57930 -9.39633 -9.20865 -8.65081 -8.60977 -6.84336 -5.97020 -3.39141 1.41485 3.31570 3.43113 3.44637 3.47384 3.52736 4.52384 4.70261 4.75946 4.99348 5.06017 5.20202 5.30951 5.33681 5.35976 5.47513 5.58996 5.59433 5.66467 5.85067 5.92811 6.03281 6.11384 6.20278 6.37967 6.46389 6.50897 6.57622 6.67113 6.74411 7.00215 7.79897 7.90296 8.34408 8.50457 8.85901 9.67302 10.22918 11.19591 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.006287 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.709239 B = 4452.560656 C = 4757.955156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.125 4.125 4 C -0.230 4.230 5 C 0.544 3.456 6 O -0.546 6.546 7 N -0.712 5.712 8 C 0.131 3.869 9 H 0.093 0.907 10 C -0.139 4.139 11 C 0.112 3.888 12 N -0.607 5.607 13 C -0.244 4.244 14 H 0.085 0.915 15 C 0.029 3.971 16 N -0.910 5.910 17 Si 0.891 3.109 18 H -0.285 1.285 19 H -0.302 1.302 20 H -0.274 1.274 21 C 0.124 3.876 22 H 0.078 0.922 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.398 0.602 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 15.036 12.282 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.043 4.043 3 C -0.181 4.181 4 C -0.251 4.251 5 C 0.334 3.666 6 O -0.426 6.426 7 N -0.362 5.362 8 C 0.026 3.974 9 H 0.111 0.889 10 C -0.178 4.178 11 C -0.013 4.013 12 N -0.335 5.335 13 C -0.372 4.372 14 H 0.103 0.897 15 C -0.170 4.170 16 N -0.553 5.553 17 Si 0.721 3.279 18 H -0.212 1.212 19 H -0.230 1.230 20 H -0.200 1.200 21 C -0.002 4.002 22 H 0.097 0.903 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.603 14.871 11.971 19.267 hybrid contribution 1.642 0.338 0.277 1.699 sum -0.961 15.209 12.248 19.551 Atomic orbital electron populations 1.20990 0.90826 1.00735 1.04530 1.22519 0.96918 0.94358 0.90506 1.20994 0.99846 0.94575 1.02720 1.22468 1.00007 0.92203 1.10443 1.18501 0.87294 0.84237 0.76558 1.90752 1.14243 1.87746 1.49828 1.45912 1.11122 1.05560 1.73651 1.22006 0.95645 0.82226 0.97479 0.88862 1.23090 0.99159 0.97705 0.97808 1.21958 0.93352 0.99405 0.86574 1.44699 1.30780 1.48094 1.09885 1.18599 0.93236 1.29600 0.95769 0.89715 1.25392 0.97574 0.98005 0.96078 1.69785 1.21944 1.32607 1.30937 0.86742 0.82591 0.80891 0.77647 1.21234 1.22961 1.19965 1.21812 0.92923 0.92741 0.92724 0.90310 0.93229 0.89575 0.91499 0.90564 0.90784 0.85908 0.76798 0.89692 0.91160 0.92436 0.96213 0.92641 0.94701 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 8.34 36.00 0.30 -1.04 16 2 C -0.04 -0.46 6.11 -101.17 -0.62 -1.08 16 3 C -0.12 -0.98 10.05 36.00 0.36 -0.62 16 4 C -0.23 -2.91 9.64 -37.81 -0.36 -3.28 16 5 C 0.54 8.65 7.70 -12.66 -0.10 8.55 16 6 O -0.55 -9.97 12.87 5.26 0.07 -9.91 16 7 N -0.71 -11.20 5.11 -53.08 -0.27 -11.47 16 8 C 0.13 2.25 3.26 -65.97 -0.22 2.03 16 9 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 10 C -0.14 -2.23 6.65 -24.45 -0.16 -2.39 16 11 C 0.11 2.36 4.91 -2.53 -0.01 2.35 16 12 N -0.61 -14.91 3.00 -170.07 -0.51 -15.42 16 13 C -0.24 -7.09 10.53 -15.06 -0.16 -7.24 16 14 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 15 C 0.03 0.86 5.46 -17.43 -0.10 0.76 16 16 N -0.91 -28.32 13.97 55.49 0.78 -27.54 16 17 Si 0.89 22.64 24.56 -169.99 -4.17 18.47 16 18 H -0.29 -6.96 7.10 56.52 0.40 -6.56 16 19 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 20 H -0.27 -6.78 6.71 56.52 0.38 -6.40 16 21 C 0.12 2.65 6.97 -3.06 -0.02 2.63 16 22 H 0.08 1.01 7.31 -51.93 -0.38 0.63 16 23 H 0.05 0.45 8.01 -51.93 -0.42 0.04 16 24 H 0.09 1.18 7.16 -51.93 -0.37 0.81 16 25 H 0.07 0.48 7.81 -51.93 -0.41 0.08 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.12 1.30 7.87 -52.48 -0.41 0.89 16 29 H 0.40 5.64 8.60 -40.82 -0.35 5.28 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 33 H 0.02 0.43 5.21 -51.93 -0.27 0.16 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 35 H 0.03 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 292.73 15.07 4.41 4.41 Total: -1.00 -32.92 292.73 -6.31 -39.23 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.53 Total: 1.56 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.08 Total: 0.67 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.01 Total: -54.44 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.17 Total: 18.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.92 -6.31 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732153493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.116 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds