Wall clock time and date at job start Sun Mar 29 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00409 * 2 1 4 4 C 1.32995 * 119.99662 * 179.97438 * 2 1 3 5 5 C 1.47102 * 120.00462 * 2.70731 * 4 2 1 6 6 O 1.21617 * 119.99452 * 5.45644 * 5 4 2 7 7 N 1.34777 * 120.00571 * 185.45566 * 5 4 2 8 8 C 1.46494 * 120.00281 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.77973 * 323.21560 * 8 7 5 10 10 C 1.55401 * 110.69481 * 199.82229 * 8 7 5 11 11 C 1.54912 * 101.66630 * 277.04747 * 10 8 7 12 12 N 1.47422 * 104.83080 * 323.07544 * 11 10 8 13 13 C 1.36939 * 125.64715 * 204.16375 * 12 11 10 14 14 H 1.07995 * 119.99898 * 146.71700 * 13 12 11 15 15 C 1.38816 * 119.99668 * 326.71725 * 13 12 11 16 16 N 1.31615 * 119.99875 * 164.03042 * 15 13 12 17 17 Si 1.86797 * 120.00257 * 344.02341 * 15 13 12 18 18 H 1.48503 * 109.47130 * 86.92013 * 17 15 13 19 19 H 1.48497 * 109.47210 * 206.92022 * 17 15 13 20 20 H 1.48506 * 109.47205 * 326.92285 * 17 15 13 21 21 C 1.47029 * 108.70559 * 24.12962 * 12 11 10 22 22 H 1.09007 * 109.47403 * 236.22548 * 1 2 3 23 23 H 1.09003 * 109.46892 * 356.22694 * 1 2 3 24 24 H 1.08994 * 109.47386 * 116.22852 * 1 2 3 25 25 H 1.08995 * 109.47112 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.46841 * 299.99951 * 3 2 1 27 27 H 1.09000 * 109.47327 * 59.99958 * 3 2 1 28 28 H 1.08006 * 120.00048 * 182.70222 * 4 2 1 29 29 H 0.97003 * 119.99465 * 359.97438 * 7 5 4 30 30 H 1.09004 * 110.89070 * 158.97770 * 10 8 7 31 31 H 1.08999 * 111.03814 * 35.18681 * 10 8 7 32 32 H 1.08996 * 110.36225 * 204.23745 * 11 10 8 33 33 H 1.09005 * 110.45645 * 81.96271 * 11 10 8 34 34 H 0.97003 * 120.00645 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.87905 * 118.35498 * 21 12 11 36 36 H 1.08996 * 109.87954 * 239.36644 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4376 -2.4251 -0.0591 6 8 0.2307 -2.4245 -0.2088 7 7 2.1023 -3.5923 0.0522 8 6 1.3709 -4.8602 -0.0066 9 1 0.4030 -4.7716 0.4866 10 6 2.2094 -6.0075 0.6224 11 6 3.1273 -6.4089 -0.5591 12 7 2.2787 -6.2782 -1.7575 13 6 2.4653 -6.9373 -2.9433 14 1 1.6130 -7.2268 -3.5400 15 6 3.7499 -7.2332 -3.3781 16 7 3.9336 -8.1224 -4.3309 17 14 5.2179 -6.3695 -2.6111 18 1 5.6531 -7.1129 -1.4014 19 1 6.3325 -6.3229 -3.5912 20 1 4.8350 -4.9860 -2.2307 21 6 1.1983 -5.3237 -1.4685 22 1 -0.3634 -0.5713 0.8543 23 1 -0.3633 1.0255 0.0676 24 1 -0.3634 -0.4541 -0.9218 25 1 3.3321 1.1058 -0.0005 26 1 1.9972 1.8765 -0.8900 27 1 1.9973 1.8766 0.8900 28 1 3.2510 -1.1524 0.0446 29 1 3.0650 -3.5927 0.1712 30 1 1.5696 -6.8384 0.9199 31 1 2.7955 -5.6459 1.4673 32 1 3.4652 -7.4387 -0.4440 33 1 3.9816 -5.7349 -0.6238 34 1 4.8313 -8.3290 -4.6351 35 1 1.2704 -4.4680 -2.1397 36 1 0.2309 -5.8106 -1.5913 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732153493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:08 Heat of formation + Delta-G solvation = -24.692654 kcal Electronic energy + Delta-G solvation = -17171.674702 eV Core-core repulsion = 14462.694168 eV Total energy + Delta-G solvation = -2708.980533 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05769 -39.20800 -36.40200 -35.39145 -33.97326 -31.42790 -29.85767 -28.66286 -28.43923 -26.15575 -22.91719 -22.55027 -21.28386 -19.76074 -18.91701 -18.06737 -17.25484 -17.01042 -16.11953 -15.86533 -15.34887 -15.19597 -15.05118 -14.76005 -14.36156 -13.95650 -13.44919 -13.34584 -13.29751 -13.06662 -12.91355 -12.71752 -12.57647 -12.40275 -12.33821 -12.07795 -11.89210 -11.53713 -10.81735 -10.60773 -10.26364 -9.83155 -8.88973 -8.23700 -5.64484 0.44833 1.28725 1.37385 1.48500 2.27159 2.37509 2.38856 3.04548 3.28917 3.65239 3.84361 3.89942 3.95054 4.19195 4.33295 4.41825 4.55803 4.58672 4.70824 4.79926 4.83656 4.93789 4.94182 4.95699 4.98007 5.05927 5.16634 5.20999 5.55429 5.61150 5.67379 5.76927 6.08208 6.63720 6.76254 7.31878 7.47058 8.09677 8.97027 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.006287 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.709239 B = 4452.560656 C = 4757.955156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.028 4.028 3 C -0.123 4.123 4 C -0.251 4.251 5 C 0.537 3.463 6 O -0.579 6.579 7 N -0.710 5.710 8 C 0.145 3.855 9 H 0.103 0.897 10 C -0.118 4.118 11 C 0.103 3.897 12 N -0.622 5.622 13 C -0.249 4.249 14 H 0.040 0.960 15 C -0.029 4.029 16 N -0.958 5.958 17 Si 0.961 3.039 18 H -0.263 1.263 19 H -0.306 1.306 20 H -0.261 1.261 21 C 0.122 3.878 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.408 0.592 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.011 0.989 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 17.396 14.993 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.030 4.030 3 C -0.179 4.179 4 C -0.272 4.272 5 C 0.328 3.672 6 O -0.461 6.461 7 N -0.361 5.361 8 C 0.039 3.961 9 H 0.121 0.879 10 C -0.156 4.156 11 C -0.021 4.021 12 N -0.350 5.350 13 C -0.378 4.378 14 H 0.058 0.942 15 C -0.224 4.224 16 N -0.603 5.603 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.234 1.234 20 H -0.186 1.186 21 C -0.004 4.004 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.165 0.835 29 H 0.244 0.756 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.074 17.249 14.726 22.706 hybrid contribution 1.010 -0.379 -0.624 1.246 sum -0.064 16.870 14.102 21.988 Atomic orbital electron populations 1.20950 0.91692 1.01917 1.02591 1.22893 0.96640 0.95653 0.87848 1.21075 1.00023 0.92725 1.04062 1.22528 1.01053 0.90861 1.12738 1.19129 0.87150 0.85282 0.75606 1.90743 1.15797 1.88257 1.51327 1.45869 1.11619 1.04985 1.73577 1.21786 0.96843 0.83370 0.94117 0.87922 1.23043 0.98312 0.97427 0.96833 1.22135 0.94044 0.99048 0.86901 1.44760 1.31955 1.48494 1.09793 1.18461 0.92254 1.29639 0.97406 0.94176 1.26112 1.00694 0.98513 0.97097 1.69933 1.22731 1.34367 1.33259 0.85641 0.78097 0.80170 0.77340 1.18806 1.23422 1.18591 1.21884 0.91639 0.91228 0.95621 0.91719 0.90477 0.92098 0.90393 0.89494 0.88847 0.83526 0.75596 0.88462 0.86935 0.93582 0.95540 0.92579 0.97123 0.95174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.34 71.23 0.59 -1.95 16 2 C -0.03 -0.56 6.11 -17.62 -0.11 -0.67 16 3 C -0.12 -1.45 10.05 71.23 0.72 -0.73 16 4 C -0.25 -5.74 9.64 23.43 0.23 -5.52 16 5 C 0.54 16.29 7.70 86.57 0.67 16.96 16 6 O -0.58 -21.05 12.87 -4.08 -0.05 -21.10 16 7 N -0.71 -20.65 5.11 -440.11 -2.25 -22.91 16 8 C 0.14 4.67 3.26 46.27 0.15 4.82 16 9 H 0.10 3.20 7.70 -2.39 -0.02 3.18 16 10 C -0.12 -3.36 6.65 32.07 0.21 -3.15 16 11 C 0.10 4.09 4.91 86.86 0.43 4.52 16 12 N -0.62 -30.67 3.00 -691.98 -2.08 -32.75 16 13 C -0.25 -14.93 10.53 84.03 0.89 -14.05 16 14 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 15 C -0.03 -1.72 5.46 84.86 0.46 -1.26 16 16 N -0.96 -61.43 13.97 21.65 0.30 -61.12 16 17 Si 0.96 46.48 24.56 68.60 1.68 48.16 16 18 H -0.26 -11.69 7.10 99.48 0.71 -10.98 16 19 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 20 H -0.26 -11.95 6.71 99.48 0.67 -11.28 16 21 C 0.12 5.27 6.97 86.73 0.60 5.87 16 22 H 0.06 1.62 7.31 -2.38 -0.02 1.60 16 23 H 0.08 1.23 8.01 -2.39 -0.02 1.21 16 24 H 0.06 1.67 7.16 -2.39 -0.02 1.66 16 25 H 0.08 0.79 7.81 -2.39 -0.02 0.77 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.15 2.58 7.87 -2.91 -0.02 2.56 16 29 H 0.41 10.14 8.60 -92.71 -0.80 9.34 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 33 H 0.03 1.05 5.21 -2.38 -0.01 1.03 16 34 H 0.27 15.99 8.31 -92.71 -0.77 15.21 16 35 H 0.01 0.51 8.04 -2.39 -0.02 0.49 16 36 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.51 292.73 2.67 -71.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.23 Total: 13.02 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.84 Total: 4.85 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.03 Total: -116.78 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.68 Total: 48.16 kcal Total: -74.51 2.67 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732153493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.149 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds