Wall clock time and date at job start Sun Mar 29 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 120.00236 * 2 1 4 4 C 1.50706 * 119.99715 * 0.02562 * 3 2 1 5 5 C 1.47100 * 120.00203 * 180.02562 * 3 2 1 6 6 O 1.21616 * 119.99789 * 0.02562 * 5 3 2 7 7 N 1.34780 * 120.00092 * 180.02562 * 5 3 2 8 8 C 1.46500 * 119.99871 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.46786 * 179.97438 * 8 7 5 10 10 H 1.08997 * 112.78530 * 303.72872 * 9 8 7 11 11 C 1.53499 * 113.46472 * 172.93553 * 9 8 7 12 12 C 1.53749 * 83.25991 * 218.98716 * 11 9 8 13 13 N 1.47072 * 113.46180 * 74.50654 * 9 8 7 14 14 C 1.36931 * 136.06174 * 321.86155 * 13 9 8 15 15 H 1.08002 * 120.00103 * 0.02562 * 14 13 9 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 9 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 H 1.09002 * 109.47168 * 299.99691 * 1 2 3 23 23 H 1.08999 * 109.47343 * 59.99714 * 1 2 3 24 24 H 1.08995 * 109.47597 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00001 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.46599 * 269.99191 * 4 3 2 27 27 H 1.08993 * 109.47165 * 29.99847 * 4 3 2 28 28 H 1.09000 * 109.46662 * 149.99793 * 4 3 2 29 29 H 0.97001 * 119.99969 * 359.97438 * 7 5 3 30 30 H 1.09001 * 109.46704 * 59.99925 * 8 7 5 31 31 H 1.08998 * 109.46915 * 299.99782 * 8 7 5 32 32 H 1.09000 * 114.20984 * 332.74702 * 11 9 8 33 33 H 1.09004 * 114.19718 * 105.37227 * 11 9 8 34 34 H 1.09004 * 113.47201 * 271.50865 * 12 11 9 35 35 H 1.09001 * 113.55046 * 140.98942 * 12 11 9 36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2510 0.0985 -0.0015 7 7 4.3169 2.3190 0.0000 8 6 5.7819 2.3189 -0.0012 9 6 6.2919 3.7614 -0.0009 10 1 5.9059 4.3458 -0.8361 11 6 7.8132 3.8718 0.1711 12 6 7.4444 5.0806 1.0468 13 7 6.1483 4.4330 1.2996 14 6 5.2156 4.4519 2.3019 15 1 4.3184 3.8568 2.2160 16 6 5.4231 5.2358 3.4286 17 7 6.5163 5.9614 3.5331 18 14 4.1504 5.2621 4.7956 19 1 4.6053 6.1711 5.8781 20 1 2.8542 5.7455 4.2560 21 1 3.9796 3.8907 5.3392 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 2.0469 -0.9353 -0.0004 26 1 1.2365 2.7718 -1.0269 27 1 0.4663 2.3265 0.5147 28 1 2.0077 3.2164 0.5144 29 1 3.8319 3.1590 0.0003 30 1 6.1444 1.8058 -0.8919 31 1 6.1459 1.8043 0.8881 32 1 8.2628 3.0417 0.7159 33 1 8.3488 4.1278 -0.7431 34 1 7.3621 6.0127 0.4878 35 1 8.0629 5.1768 1.9391 36 1 6.6611 6.5095 4.3202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733211515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:49 Heat of formation + Delta-G solvation = 26.424034 kcal Electronic energy + Delta-G solvation = -17129.175638 eV Core-core repulsion = 14422.411691 eV Total energy + Delta-G solvation = -2706.763948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52907 -38.10975 -35.40164 -34.05415 -32.22324 -29.67890 -28.01183 -27.33858 -26.00363 -23.47418 -22.39751 -20.90807 -19.37141 -18.31430 -17.00154 -16.47750 -15.69641 -15.29738 -14.65109 -14.41386 -13.92471 -13.67094 -13.42581 -13.21411 -12.90835 -12.58880 -12.32236 -11.99532 -11.85407 -11.52480 -11.24766 -11.10097 -10.97005 -10.77305 -10.59009 -10.00449 -9.84347 -9.60274 -9.18700 -8.99591 -8.82038 -8.47559 -6.90954 -5.77861 -3.10508 1.53273 3.37036 3.42044 3.42955 3.58394 3.67381 4.42460 4.89443 4.97599 5.16524 5.22483 5.28670 5.39198 5.44788 5.56168 5.66062 5.66783 5.78545 5.84150 5.92469 6.00065 6.12624 6.33041 6.40369 6.48918 6.60246 6.63252 6.73406 6.94863 7.21980 7.38906 7.56912 7.96521 7.98306 8.63040 9.01841 9.69092 10.62184 11.39256 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.007864 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.269074 B = 3559.575671 C = 4639.324088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.181 4.181 4 C -0.122 4.122 5 C 0.547 3.453 6 O -0.558 6.558 7 N -0.708 5.708 8 C 0.121 3.879 9 C 0.126 3.874 10 H 0.048 0.952 11 C -0.161 4.161 12 C 0.151 3.849 13 N -0.601 5.601 14 C -0.215 4.215 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.124 0.876 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.403 0.597 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 -6.132 -8.566 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 C -0.184 4.184 4 C -0.178 4.178 5 C 0.335 3.665 6 O -0.439 6.439 7 N -0.358 5.358 8 C -0.004 4.004 9 C 0.019 3.981 10 H 0.065 0.935 11 C -0.200 4.200 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.342 4.342 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.565 5.565 18 Si 0.738 3.262 19 H -0.215 1.215 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.239 0.761 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.604 -6.726 -8.215 13.059 hybrid contribution -0.908 0.620 0.794 1.357 sum -8.512 -6.106 -7.421 12.838 Atomic orbital electron populations 1.20949 0.92396 1.02643 1.02441 1.23474 0.95984 0.97920 0.93443 1.21530 0.93147 0.96701 1.06977 1.20863 1.00210 0.94442 1.02323 1.18379 0.87619 0.83937 0.76571 1.90734 1.70228 1.31421 1.51517 1.45933 1.08100 1.08397 1.73377 1.21805 0.78704 0.98581 1.01280 1.22424 0.94093 0.90930 0.90696 0.93494 1.23701 0.94881 1.01478 0.99918 1.22085 0.87454 0.91647 0.96243 1.45687 1.21942 1.50667 1.14415 1.18807 0.98651 1.22400 0.94346 0.90287 1.24772 0.97927 0.99334 0.98326 1.69820 1.25993 1.31558 1.29167 0.86259 0.80615 0.77457 0.81821 1.21539 1.21181 1.21085 0.90799 0.91007 0.91703 0.85805 0.91067 0.91049 0.91099 0.76093 0.92314 0.91092 0.90194 0.92365 0.95748 0.90916 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.91 36.00 0.32 -0.82 16 2 C -0.09 -1.12 9.84 -36.13 -0.36 -1.48 16 3 C -0.18 -2.61 6.00 -102.84 -0.62 -3.23 16 4 C -0.12 -1.44 9.14 36.01 0.33 -1.11 16 5 C 0.55 9.96 7.75 -12.66 -0.10 9.87 16 6 O -0.56 -11.88 16.22 5.26 0.09 -11.79 16 7 N -0.71 -12.72 5.28 -61.49 -0.32 -13.05 16 8 C 0.12 2.28 5.52 -4.04 -0.02 2.26 16 9 C 0.13 2.47 4.10 -72.39 -0.30 2.18 16 10 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.16 -2.96 8.04 -26.08 -0.21 -3.17 16 12 C 0.15 3.48 7.41 -8.37 -0.06 3.42 16 13 N -0.60 -14.75 3.65 -176.82 -0.65 -15.40 16 14 C -0.21 -5.78 10.55 -15.06 -0.16 -5.94 16 15 H 0.08 2.04 7.50 -52.49 -0.39 1.65 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.00 11.50 55.49 0.64 -26.36 16 18 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.07 0.63 7.40 -51.93 -0.38 0.25 16 23 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.12 1.69 7.49 -52.49 -0.39 1.29 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.73 6.49 -51.93 -0.34 0.39 16 28 H 0.07 0.93 6.70 -51.93 -0.35 0.58 16 29 H 0.40 6.88 6.47 -40.82 -0.26 6.61 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.87 7.11 -51.93 -0.37 1.50 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -31.92 300.98 -7.43 -39.34 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.43 Total: 4.07 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.27 Total: 1.67 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.33 Total: -54.80 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.92 -7.43 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733211515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.766 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds