Wall clock time and date at job start Sun Mar 29 2020 22:27:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.32997 * 120.00236 * 2 1
4 4 C 1.50706 * 119.99715 * 0.02562 * 3 2 1
5 5 C 1.47100 * 120.00203 * 180.02562 * 3 2 1
6 6 O 1.21616 * 119.99789 * 0.02562 * 5 3 2
7 7 N 1.34780 * 120.00092 * 180.02562 * 5 3 2
8 8 C 1.46500 * 119.99871 * 180.02562 * 7 5 3
9 9 C 1.53002 * 109.46786 * 179.97438 * 8 7 5
10 10 H 1.08997 * 112.78530 * 303.72872 * 9 8 7
11 11 C 1.53499 * 113.46472 * 172.93553 * 9 8 7
12 12 C 1.53749 * 83.25991 * 218.98716 * 11 9 8
13 13 N 1.47072 * 113.46180 * 74.50654 * 9 8 7
14 14 C 1.36931 * 136.06174 * 321.86155 * 13 9 8
15 15 H 1.08002 * 120.00103 * 0.02562 * 14 13 9
16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 9
17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13
18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13
19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14
20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14
21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14
22 22 H 1.09002 * 109.47168 * 299.99691 * 1 2 3
23 23 H 1.08999 * 109.47343 * 59.99714 * 1 2 3
24 24 H 1.08995 * 109.47597 * 180.02562 * 1 2 3
25 25 H 1.08002 * 120.00001 * 180.02562 * 2 1 3
26 26 H 1.08997 * 109.46599 * 269.99191 * 4 3 2
27 27 H 1.08993 * 109.47165 * 29.99847 * 4 3 2
28 28 H 1.09000 * 109.46662 * 149.99793 * 4 3 2
29 29 H 0.97001 * 119.99969 * 359.97438 * 7 5 3
30 30 H 1.09001 * 109.46704 * 59.99925 * 8 7 5
31 31 H 1.08998 * 109.46915 * 299.99782 * 8 7 5
32 32 H 1.09000 * 114.20984 * 332.74702 * 11 9 8
33 33 H 1.09004 * 114.19718 * 105.37227 * 11 9 8
34 34 H 1.09004 * 113.47201 * 271.50865 * 12 11 9
35 35 H 1.09001 * 113.55046 * 140.98942 * 12 11 9
36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1720 1.1518 0.0000
4 6 1.4184 2.4569 0.0006
5 6 3.6430 1.1518 -0.0006
6 8 4.2510 0.0985 -0.0015
7 7 4.3169 2.3190 0.0000
8 6 5.7819 2.3189 -0.0012
9 6 6.2919 3.7614 -0.0009
10 1 5.9059 4.3458 -0.8361
11 6 7.8132 3.8718 0.1711
12 6 7.4444 5.0806 1.0468
13 7 6.1483 4.4330 1.2996
14 6 5.2156 4.4519 2.3019
15 1 4.3184 3.8568 2.2160
16 6 5.4231 5.2358 3.4286
17 7 6.5163 5.9614 3.5331
18 14 4.1504 5.2621 4.7956
19 1 4.6053 6.1711 5.8781
20 1 2.8542 5.7455 4.2560
21 1 3.9796 3.8907 5.3392
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3634 -1.0276 0.0005
25 1 2.0469 -0.9353 -0.0004
26 1 1.2365 2.7718 -1.0269
27 1 0.4663 2.3265 0.5147
28 1 2.0077 3.2164 0.5144
29 1 3.8319 3.1590 0.0003
30 1 6.1444 1.8058 -0.8919
31 1 6.1459 1.8043 0.8881
32 1 8.2628 3.0417 0.7159
33 1 8.3488 4.1278 -0.7431
34 1 7.3621 6.0127 0.4878
35 1 8.0629 5.1768 1.9391
36 1 6.6611 6.5095 4.3202
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733211515.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:27:49
Heat of formation + Delta-G solvation = 26.424034 kcal
Electronic energy + Delta-G solvation = -17129.175638 eV
Core-core repulsion = 14422.411691 eV
Total energy + Delta-G solvation = -2706.763948 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-39.52907 -38.10975 -35.40164 -34.05415 -32.22324 -29.67890 -28.01183 -27.33858
-26.00363 -23.47418 -22.39751 -20.90807 -19.37141 -18.31430 -17.00154 -16.47750
-15.69641 -15.29738 -14.65109 -14.41386 -13.92471 -13.67094 -13.42581 -13.21411
-12.90835 -12.58880 -12.32236 -11.99532 -11.85407 -11.52480 -11.24766 -11.10097
-10.97005 -10.77305 -10.59009 -10.00449 -9.84347 -9.60274 -9.18700 -8.99591
-8.82038 -8.47559 -6.90954 -5.77861 -3.10508 1.53273 3.37036 3.42044
3.42955 3.58394 3.67381 4.42460 4.89443 4.97599 5.16524 5.22483
5.28670 5.39198 5.44788 5.56168 5.66062 5.66783 5.78545 5.84150
5.92469 6.00065 6.12624 6.33041 6.40369 6.48918 6.60246 6.63252
6.73406 6.94863 7.21980 7.38906 7.56912 7.96521 7.98306 8.63040
9.01841 9.69092 10.62184 11.39256
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.020020 B = 0.007864 C = 0.006034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1398.269074 B = 3559.575671 C = 4639.324088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.088 4.088
3 C -0.181 4.181
4 C -0.122 4.122
5 C 0.547 3.453
6 O -0.558 6.558
7 N -0.708 5.708
8 C 0.121 3.879
9 C 0.126 3.874
10 H 0.048 0.952
11 C -0.161 4.161
12 C 0.151 3.849
13 N -0.601 5.601
14 C -0.215 4.215
15 H 0.079 0.921
16 C -0.007 4.007
17 N -0.919 5.919
18 Si 0.908 3.092
19 H -0.290 1.290
20 H -0.285 1.285
21 H -0.284 1.284
22 H 0.073 0.927
23 H 0.071 0.929
24 H 0.064 0.936
25 H 0.124 0.876
26 H 0.071 0.929
27 H 0.071 0.929
28 H 0.070 0.930
29 H 0.403 0.597
30 H 0.059 0.941
31 H 0.071 0.929
32 H 0.079 0.921
33 H 0.058 0.942
34 H 0.025 0.975
35 H 0.073 0.927
36 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.923 -6.132 -8.566 13.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.108 4.108
3 C -0.184 4.184
4 C -0.178 4.178
5 C 0.335 3.665
6 O -0.439 6.439
7 N -0.358 5.358
8 C -0.004 4.004
9 C 0.019 3.981
10 H 0.065 0.935
11 C -0.200 4.200
12 C 0.026 3.974
13 N -0.327 5.327
14 C -0.342 4.342
15 H 0.097 0.903
16 C -0.204 4.204
17 N -0.565 5.565
18 Si 0.738 3.262
19 H -0.215 1.215
20 H -0.212 1.212
21 H -0.211 1.211
22 H 0.092 0.908
23 H 0.090 0.910
24 H 0.083 0.917
25 H 0.142 0.858
26 H 0.089 0.911
27 H 0.090 0.910
28 H 0.089 0.911
29 H 0.239 0.761
30 H 0.077 0.923
31 H 0.089 0.911
32 H 0.098 0.902
33 H 0.076 0.924
34 H 0.043 0.957
35 H 0.091 0.909
36 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -7.604 -6.726 -8.215 13.059
hybrid contribution -0.908 0.620 0.794 1.357
sum -8.512 -6.106 -7.421 12.838
Atomic orbital electron populations
1.20949 0.92396 1.02643 1.02441 1.23474 0.95984 0.97920 0.93443
1.21530 0.93147 0.96701 1.06977 1.20863 1.00210 0.94442 1.02323
1.18379 0.87619 0.83937 0.76571 1.90734 1.70228 1.31421 1.51517
1.45933 1.08100 1.08397 1.73377 1.21805 0.78704 0.98581 1.01280
1.22424 0.94093 0.90930 0.90696 0.93494 1.23701 0.94881 1.01478
0.99918 1.22085 0.87454 0.91647 0.96243 1.45687 1.21942 1.50667
1.14415 1.18807 0.98651 1.22400 0.94346 0.90287 1.24772 0.97927
0.99334 0.98326 1.69820 1.25993 1.31558 1.29167 0.86259 0.80615
0.77457 0.81821 1.21539 1.21181 1.21085 0.90799 0.91007 0.91703
0.85805 0.91067 0.91049 0.91099 0.76093 0.92314 0.91092 0.90194
0.92365 0.95748 0.90916 0.93628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.14 8.91 36.00 0.32 -0.82 16
2 C -0.09 -1.12 9.84 -36.13 -0.36 -1.48 16
3 C -0.18 -2.61 6.00 -102.84 -0.62 -3.23 16
4 C -0.12 -1.44 9.14 36.01 0.33 -1.11 16
5 C 0.55 9.96 7.75 -12.66 -0.10 9.87 16
6 O -0.56 -11.88 16.22 5.26 0.09 -11.79 16
7 N -0.71 -12.72 5.28 -61.49 -0.32 -13.05 16
8 C 0.12 2.28 5.52 -4.04 -0.02 2.26 16
9 C 0.13 2.47 4.10 -72.39 -0.30 2.18 16
10 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
11 C -0.16 -2.96 8.04 -26.08 -0.21 -3.17 16
12 C 0.15 3.48 7.41 -8.37 -0.06 3.42 16
13 N -0.60 -14.75 3.65 -176.82 -0.65 -15.40 16
14 C -0.21 -5.78 10.55 -15.06 -0.16 -5.94 16
15 H 0.08 2.04 7.50 -52.49 -0.39 1.65 16
16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
17 N -0.92 -27.00 11.50 55.49 0.64 -26.36 16
18 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16
19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
22 H 0.07 0.63 7.40 -51.93 -0.38 0.25 16
23 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16
24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
25 H 0.12 1.69 7.49 -52.49 -0.39 1.29 16
26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.07 0.73 6.49 -51.93 -0.34 0.39 16
28 H 0.07 0.93 6.70 -51.93 -0.35 0.58 16
29 H 0.40 6.88 6.47 -40.82 -0.26 6.61 16
30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16
32 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16
33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16
35 H 0.07 1.87 7.11 -51.93 -0.37 1.50 16
36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
LS Contribution 300.98 15.07 4.54 4.54
Total: -1.00 -31.92 300.98 -7.43 -39.34
By element:
Atomic # 1 Polarization: 9.50 SS G_CDS: -5.43 Total: 4.07 kcal
Atomic # 6 Polarization: 2.94 SS G_CDS: -1.27 Total: 1.67 kcal
Atomic # 7 Polarization: -54.47 SS G_CDS: -0.33 Total: -54.80 kcal
Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -31.92 -7.43 -39.34 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733211515.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.766 kcal
(2) G-P(sol) polarization free energy of solvation -31.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.850 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds