Wall clock time and date at job start Sun Mar 29 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 120.00236 * 2 1 4 4 C 1.50706 * 119.99715 * 0.02562 * 3 2 1 5 5 C 1.47100 * 120.00203 * 180.02562 * 3 2 1 6 6 O 1.21616 * 119.99789 * 0.02562 * 5 3 2 7 7 N 1.34780 * 120.00092 * 180.02562 * 5 3 2 8 8 C 1.46500 * 119.99871 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.46786 * 179.97438 * 8 7 5 10 10 H 1.08997 * 112.78530 * 303.72872 * 9 8 7 11 11 C 1.53499 * 113.46472 * 172.93553 * 9 8 7 12 12 C 1.53749 * 83.25991 * 218.98716 * 11 9 8 13 13 N 1.47072 * 113.46180 * 74.50654 * 9 8 7 14 14 C 1.36931 * 136.06174 * 321.86155 * 13 9 8 15 15 H 1.08002 * 120.00103 * 0.02562 * 14 13 9 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 9 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 H 1.09002 * 109.47168 * 299.99691 * 1 2 3 23 23 H 1.08999 * 109.47343 * 59.99714 * 1 2 3 24 24 H 1.08995 * 109.47597 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00001 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.46599 * 269.99191 * 4 3 2 27 27 H 1.08993 * 109.47165 * 29.99847 * 4 3 2 28 28 H 1.09000 * 109.46662 * 149.99793 * 4 3 2 29 29 H 0.97001 * 119.99969 * 359.97438 * 7 5 3 30 30 H 1.09001 * 109.46704 * 59.99925 * 8 7 5 31 31 H 1.08998 * 109.46915 * 299.99782 * 8 7 5 32 32 H 1.09000 * 114.20984 * 332.74702 * 11 9 8 33 33 H 1.09004 * 114.19718 * 105.37227 * 11 9 8 34 34 H 1.09004 * 113.47201 * 271.50865 * 12 11 9 35 35 H 1.09001 * 113.55046 * 140.98942 * 12 11 9 36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2510 0.0985 -0.0015 7 7 4.3169 2.3190 0.0000 8 6 5.7819 2.3189 -0.0012 9 6 6.2919 3.7614 -0.0009 10 1 5.9059 4.3458 -0.8361 11 6 7.8132 3.8718 0.1711 12 6 7.4444 5.0806 1.0468 13 7 6.1483 4.4330 1.2996 14 6 5.2156 4.4519 2.3019 15 1 4.3184 3.8568 2.2160 16 6 5.4231 5.2358 3.4286 17 7 6.5163 5.9614 3.5331 18 14 4.1504 5.2621 4.7956 19 1 4.6053 6.1711 5.8781 20 1 2.8542 5.7455 4.2560 21 1 3.9796 3.8907 5.3392 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 2.0469 -0.9353 -0.0004 26 1 1.2365 2.7718 -1.0269 27 1 0.4663 2.3265 0.5147 28 1 2.0077 3.2164 0.5144 29 1 3.8319 3.1590 0.0003 30 1 6.1444 1.8058 -0.8919 31 1 6.1459 1.8043 0.8881 32 1 8.2628 3.0417 0.7159 33 1 8.3488 4.1278 -0.7431 34 1 7.3621 6.0127 0.4878 35 1 8.0629 5.1768 1.9391 36 1 6.6611 6.5095 4.3202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733211515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:49 Heat of formation + Delta-G solvation = 5.116677 kcal Electronic energy + Delta-G solvation = -17130.099595 eV Core-core repulsion = 14422.411691 eV Total energy + Delta-G solvation = -2707.687904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96891 -39.77194 -36.46646 -35.57616 -34.24389 -30.73532 -29.91361 -28.75563 -26.99151 -25.39675 -23.93789 -22.29156 -21.09142 -19.70385 -18.51645 -17.91825 -17.15545 -17.08976 -16.25751 -15.87993 -15.62555 -15.03579 -14.70202 -14.41919 -14.33430 -13.61723 -13.42150 -13.31947 -13.28545 -12.96119 -12.87976 -12.67896 -12.58641 -12.35191 -12.15994 -11.85383 -11.64887 -11.23951 -10.86592 -10.76028 -10.17332 -9.83231 -8.89713 -7.87459 -5.19476 0.40960 1.43512 1.46636 1.52036 2.23925 2.32673 2.48045 3.34199 3.43417 3.76860 3.93567 4.00155 4.13076 4.30410 4.32573 4.47007 4.61237 4.67238 4.74171 4.82097 4.87707 4.91200 5.04664 5.06310 5.08052 5.14278 5.32106 5.43557 5.51427 5.58148 5.68254 5.73298 5.97061 6.58674 6.93611 7.22758 7.63872 8.63734 9.29883 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.007864 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.269074 B = 3559.575671 C = 4639.324088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 C -0.208 4.208 4 C -0.114 4.114 5 C 0.539 3.461 6 O -0.599 6.599 7 N -0.708 5.708 8 C 0.129 3.871 9 C 0.133 3.867 10 H 0.070 0.930 11 C -0.134 4.134 12 C 0.143 3.857 13 N -0.629 5.629 14 C -0.210 4.210 15 H 0.085 0.915 16 C -0.070 4.070 17 N -0.954 5.954 18 Si 0.968 3.032 19 H -0.297 1.297 20 H -0.271 1.271 21 H -0.285 1.285 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.408 0.592 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.024 0.976 35 H 0.036 0.964 36 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.913 -6.712 -9.908 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 C -0.210 4.210 4 C -0.171 4.171 5 C 0.330 3.670 6 O -0.482 6.482 7 N -0.357 5.357 8 C 0.004 3.996 9 C 0.026 3.974 10 H 0.087 0.913 11 C -0.173 4.173 12 C 0.017 3.983 13 N -0.355 5.355 14 C -0.338 4.338 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.797 3.203 19 H -0.223 1.223 20 H -0.196 1.196 21 H -0.211 1.211 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.245 0.755 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.616 -7.308 -9.596 15.426 hybrid contribution -0.285 0.702 1.137 1.366 sum -9.901 -6.607 -8.459 14.602 Atomic orbital electron populations 1.21039 0.89125 1.04247 1.03688 1.23780 0.98242 0.96642 0.90252 1.21527 0.90952 0.98672 1.09894 1.20855 1.00321 0.92376 1.03524 1.19063 0.89363 0.83175 0.75429 1.90703 1.71430 1.32597 1.53518 1.45931 1.07721 1.08804 1.73266 1.21610 0.79532 0.97824 1.00653 1.22570 0.94961 0.90873 0.88975 0.91279 1.23524 0.94605 0.98755 1.00416 1.22103 0.86830 0.93544 0.95793 1.46006 1.22045 1.51464 1.16019 1.19163 0.98834 1.20985 0.94842 0.89722 1.25547 0.99892 1.00061 1.00812 1.70008 1.27875 1.32955 1.29475 0.85297 0.79004 0.76992 0.79003 1.22344 1.19633 1.21113 0.89680 0.89142 0.90126 0.87358 0.89337 0.88991 0.92800 0.75519 0.90417 0.94231 0.90386 0.88105 0.95780 0.94514 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.91 71.23 0.63 -1.14 16 2 C -0.07 -1.62 9.84 24.52 0.24 -1.37 16 3 C -0.21 -5.68 6.00 -18.70 -0.11 -5.79 16 4 C -0.11 -2.42 9.14 71.24 0.65 -1.77 16 5 C 0.54 19.41 7.75 86.57 0.67 20.08 16 6 O -0.60 -25.66 16.22 -4.08 -0.07 -25.72 16 7 N -0.71 -24.88 5.28 -466.70 -2.46 -27.35 16 8 C 0.13 4.74 5.52 86.38 0.48 5.22 16 9 C 0.13 4.98 4.10 41.79 0.17 5.15 16 10 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 11 C -0.13 -4.70 8.04 31.01 0.25 -4.46 16 12 C 0.14 6.59 7.41 83.26 0.62 7.21 16 13 N -0.63 -30.82 3.65 -713.34 -2.60 -33.42 16 14 C -0.21 -11.35 10.55 84.03 0.89 -10.47 16 15 H 0.09 4.36 7.50 -2.91 -0.02 4.33 16 16 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 17 N -0.95 -57.59 11.50 21.65 0.25 -57.34 16 18 Si 0.97 45.70 29.55 68.60 2.03 47.72 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 H 0.08 1.10 7.40 -2.39 -0.02 1.09 16 23 H 0.09 1.03 8.10 -2.39 -0.02 1.01 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 2.86 7.49 -2.91 -0.02 2.84 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.54 6.49 -2.39 -0.02 1.53 16 28 H 0.05 1.32 6.70 -2.39 -0.02 1.30 16 29 H 0.41 13.49 6.47 -92.71 -0.60 12.89 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 33 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.94 7.11 -2.39 -0.02 1.93 16 36 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -70.61 300.98 2.56 -68.05 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.47 Total: 18.90 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.95 Total: 9.16 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -4.82 Total: -118.11 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.07 Total: -25.72 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.61 2.56 -68.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733211515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.165 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds