Wall clock time and date at job start Sun Mar 29 2020 22:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 115.54857 * 2 1 4 4 O 1.21279 * 119.99952 * 214.42077 * 3 2 1 5 5 N 1.34769 * 120.00159 * 34.41525 * 3 2 1 6 6 C 1.46507 * 120.00195 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47132 * 180.02562 * 6 5 3 8 8 H 1.09003 * 112.96587 * 306.67886 * 7 6 5 9 9 C 1.53942 * 113.76883 * 174.99735 * 7 6 5 10 10 C 1.53947 * 86.28992 * 222.09230 * 9 7 6 11 11 N 1.47581 * 86.11784 * 23.60995 * 10 9 7 12 12 C 1.36935 * 134.49239 * 155.36214 * 11 10 9 13 13 H 1.08000 * 119.99734 * 187.05325 * 12 11 10 14 14 C 1.38808 * 119.99999 * 7.05167 * 12 11 10 15 15 N 1.31615 * 120.00419 * 7.61169 * 14 12 11 16 16 Si 1.86807 * 119.99792 * 187.61024 * 14 12 11 17 17 H 1.48505 * 109.46959 * 94.81153 * 16 14 12 18 18 H 1.48498 * 109.46854 * 214.81008 * 16 14 12 19 19 H 1.48491 * 109.47083 * 334.81289 * 16 14 12 20 20 C 1.53001 * 117.50232 * 145.67174 * 2 1 3 21 21 C 1.52998 * 117.49825 * 214.32992 * 2 1 3 22 22 H 1.09004 * 109.47208 * 85.58908 * 1 2 3 23 23 H 1.09002 * 109.46979 * 205.58271 * 1 2 3 24 24 H 1.09000 * 109.47273 * 325.58044 * 1 2 3 25 25 H 0.96999 * 120.00419 * 0.02562 * 5 3 2 26 26 H 1.09005 * 109.46393 * 299.99871 * 6 5 3 27 27 H 1.08997 * 109.46809 * 59.99895 * 6 5 3 28 28 H 1.08999 * 113.74139 * 336.44154 * 9 7 6 29 29 H 1.08997 * 113.74196 * 107.64097 * 9 7 6 30 30 H 1.09009 * 113.76806 * 137.90978 * 10 9 7 31 31 H 1.08997 * 113.77000 * 269.19111 * 10 9 7 32 32 H 0.96995 * 120.00359 * 179.97438 * 15 14 12 33 33 H 1.09003 * 117.49651 * 215.00524 * 20 2 1 34 34 H 1.09002 * 117.49310 * 0.02562 * 20 2 1 35 35 H 1.08999 * 117.50102 * 359.97438 * 21 2 1 36 36 H 1.09004 * 117.50056 * 144.97567 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2231 1.5331 -0.5937 5 7 1.6019 2.3829 0.6596 6 6 2.2334 3.7048 0.6592 7 6 1.3801 4.6780 1.4751 8 1 0.3396 4.7057 1.1514 9 6 2.0152 6.0703 1.6422 10 6 1.5373 6.0027 3.1040 11 7 1.5480 4.5367 2.9346 12 6 1.6662 3.4728 3.7885 13 1 1.7576 2.4715 3.3942 14 6 1.6685 3.6813 5.1608 15 7 1.4079 4.8769 5.6454 16 14 2.0415 2.2647 6.3201 17 1 3.4850 2.2775 6.6689 18 1 1.2321 2.4107 7.5565 19 1 1.7041 0.9799 5.6563 20 6 2.2365 -1.1207 0.7653 21 6 2.2364 -1.1207 -0.7654 22 1 -0.3634 0.0790 -1.0246 23 1 -0.3633 -0.9269 0.4438 24 1 -0.3634 0.8477 0.5809 25 1 0.7677 2.2442 1.1348 26 1 3.2266 3.6331 1.1027 27 1 2.3183 4.0665 -0.3655 28 1 3.0999 6.0736 1.5347 29 1 1.5277 6.8484 1.0549 30 1 2.2708 6.3672 3.8234 31 1 0.5433 6.4214 3.2611 32 1 1.4091 5.0224 6.6043 33 1 3.1714 -0.8745 1.2689 34 1 1.6112 -1.8583 1.2685 35 1 1.6112 -1.8583 -1.2685 36 1 3.1711 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733212047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:18 Heat of formation + Delta-G solvation = 14.954271 kcal Electronic energy + Delta-G solvation = -17303.411184 eV Core-core repulsion = 14596.149871 eV Total energy + Delta-G solvation = -2707.261314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18652 -39.72696 -37.62964 -35.58519 -34.22249 -30.27968 -29.81285 -28.76513 -25.30495 -24.82548 -23.41576 -23.07216 -21.13107 -20.33928 -18.60760 -17.90508 -17.16694 -17.11794 -16.19584 -16.01370 -15.64765 -15.21296 -14.99099 -14.56081 -14.02399 -13.57680 -13.46724 -13.27437 -13.23831 -13.00057 -12.69481 -12.64324 -12.39866 -12.26152 -11.89351 -11.53827 -11.51183 -11.37568 -10.94771 -10.82241 -10.70917 -10.03298 -8.90202 -7.89995 -5.20078 1.42508 1.44844 1.49745 1.52389 2.18080 2.47050 2.86801 3.31467 3.36296 3.65631 3.76168 3.91714 3.96937 4.01754 4.12306 4.33342 4.60973 4.68603 4.69162 4.77772 4.85608 4.86007 4.91180 4.95616 5.04629 5.08755 5.20511 5.27097 5.30680 5.45804 5.57176 5.72830 5.95170 6.55699 6.94464 7.22268 7.64040 8.59691 9.28346 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.008268 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.008316 B = 3385.598306 C = 4369.810961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.180 4.180 3 C 0.538 3.462 4 O -0.591 6.591 5 N -0.708 5.708 6 C 0.132 3.868 7 C 0.131 3.869 8 H 0.069 0.931 9 C -0.130 4.130 10 C 0.157 3.843 11 N -0.628 5.628 12 C -0.214 4.214 13 H 0.083 0.917 14 C -0.069 4.069 15 N -0.954 5.954 16 Si 0.965 3.035 17 H -0.296 1.296 18 H -0.295 1.295 19 H -0.264 1.264 20 C -0.150 4.150 21 C -0.133 4.133 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.408 0.592 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.027 0.973 31 H 0.024 0.976 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -8.057 -12.000 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.183 4.183 3 C 0.326 3.674 4 O -0.473 6.473 5 N -0.358 5.358 6 C 0.007 3.993 7 C 0.025 3.975 8 H 0.086 0.914 9 C -0.169 4.169 10 C 0.032 3.968 11 N -0.355 5.355 12 C -0.343 4.343 13 H 0.100 0.900 14 C -0.262 4.262 15 N -0.604 5.604 16 Si 0.794 3.206 17 H -0.223 1.223 18 H -0.222 1.222 19 H -0.188 1.188 20 C -0.187 4.187 21 C -0.171 4.171 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.244 0.756 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.658 -8.062 -12.117 14.795 hybrid contribution -0.035 -0.295 1.496 1.525 sum -2.692 -8.357 -10.622 13.780 Atomic orbital electron populations 1.21363 0.88331 1.03617 1.03243 1.21590 0.97463 0.87954 1.11306 1.20132 0.83804 0.86088 0.77353 1.90620 1.25218 1.84862 1.46617 1.45945 1.27445 1.09998 1.52387 1.21559 0.96140 0.81959 0.99684 1.22657 0.97084 0.93546 0.84204 0.91375 1.23567 1.00953 0.95813 0.96544 1.22044 0.96819 0.84043 0.93930 1.46523 1.84303 1.02361 1.02290 1.19291 1.40470 0.87495 0.87045 0.89955 1.25532 1.03362 0.99038 0.98250 1.70003 1.56486 1.22427 1.11436 0.85251 0.76956 0.79630 0.78752 1.22322 1.22229 1.18828 1.23194 1.01694 0.98370 0.95471 1.23079 1.02022 0.97875 0.94089 0.90533 0.89480 0.92360 0.75579 0.94082 0.90234 0.90183 0.88594 0.95443 0.95771 0.94497 0.90399 0.85185 0.84911 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.79 71.98 0.70 -1.36 16 2 C -0.18 -4.58 2.61 -52.93 -0.14 -4.72 16 3 C 0.54 18.44 7.39 87.66 0.65 19.08 16 4 O -0.59 -24.40 16.26 -3.03 -0.05 -24.45 16 5 N -0.71 -23.90 5.41 -463.05 -2.51 -26.40 16 6 C 0.13 4.69 5.54 86.38 0.48 5.16 16 7 C 0.13 4.85 4.33 45.09 0.20 5.04 16 8 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 9 C -0.13 -4.48 7.86 31.25 0.25 -4.23 16 10 C 0.16 7.23 7.31 86.48 0.63 7.86 16 11 N -0.63 -30.57 3.56 -694.08 -2.47 -33.04 16 12 C -0.21 -11.56 10.49 84.03 0.88 -10.68 16 13 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 14 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 15 N -0.95 -57.54 11.76 21.65 0.25 -57.28 16 16 Si 0.96 45.80 29.56 68.60 2.03 47.83 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 C -0.15 -3.47 9.88 30.62 0.30 -3.17 16 21 C -0.13 -2.89 9.77 30.62 0.30 -2.59 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.09 1.30 7.90 -2.39 -0.02 1.28 16 24 H 0.06 1.19 6.39 -2.39 -0.02 1.17 16 25 H 0.41 13.00 6.78 -92.71 -0.63 12.37 16 26 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.03 1.42 7.69 -2.38 -0.02 1.40 16 31 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.13 2.28 8.05 -2.39 -0.02 2.26 16 35 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 2.24 7.67 -2.39 -0.02 2.22 16 Total: -1.00 -69.65 302.15 2.40 -67.25 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.43 Total: 19.13 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 4.71 Total: 6.96 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.72 Total: -116.72 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.65 2.40 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733212047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.203 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds