Wall clock time and date at job start Sun Mar 29 2020 22:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 120.00136 * 2 1 4 4 C 1.50703 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.53010 * 109.47123 * 94.99762 * 4 2 1 6 6 C 1.50693 * 109.47101 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00456 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00090 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00064 * 179.97438 * 8 6 5 10 10 C 1.53495 * 114.20428 * 155.00342 * 9 8 6 11 11 N 1.47066 * 87.98658 * 87.51928 * 10 9 8 12 12 C 1.36937 * 136.06113 * 206.85859 * 11 10 9 13 13 H 1.07995 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46896 * 90.00557 * 16 14 12 18 18 H 1.48506 * 109.46723 * 210.00327 * 16 14 12 19 19 H 1.48496 * 109.47378 * 330.00014 * 16 14 12 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 9 21 21 H 1.08004 * 120.00047 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00334 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47090 * 240.00084 * 3 2 1 24 24 H 1.08996 * 109.47360 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47032 * 120.00215 * 3 2 1 26 26 H 1.09003 * 109.47272 * 335.00012 * 4 2 1 27 27 H 1.09000 * 109.47191 * 214.99539 * 4 2 1 28 28 H 1.09003 * 109.46842 * 59.99987 * 5 4 2 29 29 H 1.09000 * 109.46906 * 299.99952 * 5 4 2 30 30 H 0.96994 * 119.99541 * 0.02562 * 8 6 5 31 31 H 1.08994 * 113.28068 * 21.93803 * 9 8 6 32 32 H 1.09005 * 113.46950 * 332.74494 * 10 9 8 33 33 H 1.08994 * 113.52293 * 202.30979 * 10 9 8 34 34 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 35 35 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 36 36 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4379 6 6 3.1802 -2.9887 -1.4385 7 8 3.4034 -3.5606 -0.3925 8 7 3.6047 -3.5213 -2.6015 9 6 4.3371 -4.7901 -2.6021 10 6 4.2365 -5.5742 -3.9178 11 7 5.3979 -4.8121 -4.4006 12 6 5.8817 -4.4189 -5.6198 13 1 5.3507 -4.6834 -6.5223 14 6 7.0541 -3.6795 -5.6958 15 7 7.7010 -3.3567 -4.5959 16 14 7.7136 -3.1426 -7.3590 17 1 7.1471 -1.8159 -7.7113 18 1 9.1943 -3.0481 -7.2972 19 1 7.3237 -4.1371 -8.3906 20 6 5.8148 -4.6635 -2.9981 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 2.6901 1.3628 -0.8900 24 1 1.3552 2.1336 0.0005 25 1 2.6901 1.3628 0.8900 26 1 1.4385 -2.0857 0.4334 27 1 2.9742 -1.1991 0.5888 28 1 3.0522 -0.9028 -1.8718 29 1 1.5165 -1.7893 -2.0273 30 1 3.4258 -3.0641 -3.4381 31 1 4.1601 -5.3900 -1.7096 32 1 3.3221 -5.3713 -4.4753 33 1 4.4334 -6.6403 -3.8050 34 1 8.5204 -2.8404 -4.6491 35 1 6.4323 -5.4870 -2.6392 36 1 6.2422 -3.6864 -2.7734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753379434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:02 Heat of formation + Delta-G solvation = 25.681534 kcal Electronic energy + Delta-G solvation = -16673.251677 eV Core-core repulsion = 13966.455533 eV Total energy + Delta-G solvation = -2706.796145 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.58195 -37.81244 -36.30667 -33.21696 -31.95285 -30.96674 -27.65087 -27.33289 -24.77119 -24.60640 -22.88266 -20.13141 -19.26950 -18.45104 -16.86635 -16.56427 -15.56775 -15.32186 -14.90561 -14.60774 -14.03744 -13.81658 -13.76112 -13.22004 -12.75588 -12.72427 -12.43992 -11.99612 -11.77246 -11.55227 -11.26496 -11.07342 -10.90148 -10.85433 -10.63079 -10.18200 -9.93107 -9.53099 -9.42011 -9.09859 -8.86900 -8.29887 -6.93704 -5.80030 -3.14031 2.12518 3.04601 3.35552 3.40768 3.43093 3.67693 4.41817 4.74699 4.84220 5.10383 5.18983 5.23499 5.33388 5.45249 5.47516 5.54978 5.55632 5.72129 5.79644 5.86201 5.97467 6.16124 6.17927 6.24350 6.40311 6.52058 6.55264 6.80639 6.84581 7.19423 7.32455 7.56916 7.93184 8.08575 8.70072 8.99338 9.66217 10.59384 11.36683 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.005186 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.932204 B = 5397.362933 C = 5981.798714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.512 3.488 7 O -0.555 6.555 8 N -0.691 5.691 9 C 0.084 3.916 10 C 0.108 3.892 11 N -0.609 5.609 12 C -0.222 4.222 13 H 0.081 0.919 14 C -0.006 4.006 15 N -0.917 5.917 16 Si 0.912 3.088 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.141 3.859 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.404 0.596 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.254 0.746 35 H 0.033 0.967 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 5.593 6.528 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.121 4.121 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.434 6.434 8 N -0.340 5.340 9 C -0.023 4.023 10 C -0.019 4.019 11 N -0.336 5.336 12 C -0.349 4.349 13 H 0.099 0.901 14 C -0.203 4.203 15 N -0.564 5.564 16 Si 0.742 3.258 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.207 1.207 20 C 0.014 3.986 21 H 0.113 0.887 22 H 0.115 0.885 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.239 0.761 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.820 5.341 7.019 14.748 hybrid contribution 0.521 0.386 -1.445 1.584 sum -11.298 5.727 5.574 13.839 Atomic orbital electron populations 1.23701 0.95188 1.01686 1.03275 1.21833 0.95457 0.95879 0.98928 1.20905 1.00262 0.94200 1.02493 1.20394 1.00826 0.93898 0.95642 1.21606 1.01157 0.95708 0.98904 1.20579 0.79221 0.86653 0.83755 1.90655 1.58251 1.62969 1.31523 1.45491 1.55818 1.23744 1.08934 1.22579 0.95992 0.85300 0.98381 1.22773 0.92293 0.95154 0.91641 1.45731 1.25411 1.60174 1.02270 1.18927 1.05481 1.27809 0.82722 0.90140 1.24805 0.97422 1.00815 0.97237 1.69845 1.18480 1.42430 1.25617 0.86126 0.78166 0.78510 0.82963 1.21513 1.21628 1.20672 1.22558 0.91099 1.01030 0.83899 0.88690 0.88525 0.91308 0.92204 0.91504 0.90629 0.90432 0.88834 0.89158 0.76086 0.88677 0.93905 0.93747 0.93608 0.94888 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 13.90 29.02 0.40 -1.51 16 2 C -0.12 -1.26 5.31 -101.06 -0.54 -1.79 16 3 C -0.12 -1.11 10.12 36.01 0.36 -0.75 16 4 C -0.07 -0.85 4.67 -27.88 -0.13 -0.98 16 5 C -0.13 -1.68 5.68 -27.88 -0.16 -1.84 16 6 C 0.51 8.58 7.83 -10.99 -0.09 8.50 16 7 O -0.56 -11.08 15.57 5.55 0.09 -10.99 16 8 N -0.69 -12.17 5.39 -53.62 -0.29 -12.46 16 9 C 0.08 1.64 4.61 -67.81 -0.31 1.33 16 10 C 0.11 2.17 8.45 -8.51 -0.07 2.10 16 11 N -0.61 -15.27 3.78 -184.79 -0.70 -15.97 16 12 C -0.22 -6.09 10.75 -15.06 -0.16 -6.25 16 13 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 15 N -0.92 -27.09 11.51 55.49 0.64 -26.45 16 16 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.14 3.37 7.21 -8.51 -0.06 3.31 16 21 H 0.09 0.78 7.83 -52.48 -0.41 0.37 16 22 H 0.10 0.88 7.99 -52.49 -0.42 0.46 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 27 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 6.80 8.76 -40.82 -0.36 6.44 16 31 H 0.10 1.81 7.45 -51.93 -0.39 1.42 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 2.02 7.12 -51.93 -0.37 1.65 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -31.60 307.27 -7.19 -38.79 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.69 Total: 3.83 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.85 Total: 1.87 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.35 Total: -54.87 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.60 -7.19 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753379434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.470 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds