Wall clock time and date at job start Sun Mar 29 2020 22:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 120.00136 * 2 1 4 4 C 1.50703 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.53010 * 109.47123 * 94.99762 * 4 2 1 6 6 C 1.50693 * 109.47101 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00456 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00090 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00064 * 179.97438 * 8 6 5 10 10 C 1.53495 * 114.20428 * 155.00342 * 9 8 6 11 11 N 1.47066 * 87.98658 * 87.51928 * 10 9 8 12 12 C 1.36937 * 136.06113 * 206.85859 * 11 10 9 13 13 H 1.07995 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46896 * 90.00557 * 16 14 12 18 18 H 1.48506 * 109.46723 * 210.00327 * 16 14 12 19 19 H 1.48496 * 109.47378 * 330.00014 * 16 14 12 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 9 21 21 H 1.08004 * 120.00047 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00334 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47090 * 240.00084 * 3 2 1 24 24 H 1.08996 * 109.47360 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47032 * 120.00215 * 3 2 1 26 26 H 1.09003 * 109.47272 * 335.00012 * 4 2 1 27 27 H 1.09000 * 109.47191 * 214.99539 * 4 2 1 28 28 H 1.09003 * 109.46842 * 59.99987 * 5 4 2 29 29 H 1.09000 * 109.46906 * 299.99952 * 5 4 2 30 30 H 0.96994 * 119.99541 * 0.02562 * 8 6 5 31 31 H 1.08994 * 113.28068 * 21.93803 * 9 8 6 32 32 H 1.09005 * 113.46950 * 332.74494 * 10 9 8 33 33 H 1.08994 * 113.52293 * 202.30979 * 10 9 8 34 34 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 35 35 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 36 36 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4379 6 6 3.1802 -2.9887 -1.4385 7 8 3.4034 -3.5606 -0.3925 8 7 3.6047 -3.5213 -2.6015 9 6 4.3371 -4.7901 -2.6021 10 6 4.2365 -5.5742 -3.9178 11 7 5.3979 -4.8121 -4.4006 12 6 5.8817 -4.4189 -5.6198 13 1 5.3507 -4.6834 -6.5223 14 6 7.0541 -3.6795 -5.6958 15 7 7.7010 -3.3567 -4.5959 16 14 7.7136 -3.1426 -7.3590 17 1 7.1471 -1.8159 -7.7113 18 1 9.1943 -3.0481 -7.2972 19 1 7.3237 -4.1371 -8.3906 20 6 5.8148 -4.6635 -2.9981 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 2.6901 1.3628 -0.8900 24 1 1.3552 2.1336 0.0005 25 1 2.6901 1.3628 0.8900 26 1 1.4385 -2.0857 0.4334 27 1 2.9742 -1.1991 0.5888 28 1 3.0522 -0.9028 -1.8718 29 1 1.5165 -1.7893 -2.0273 30 1 3.4258 -3.0641 -3.4381 31 1 4.1601 -5.3900 -1.7096 32 1 3.3221 -5.3713 -4.4753 33 1 4.4334 -6.6403 -3.8050 34 1 8.5204 -2.8404 -4.6491 35 1 6.4323 -5.4870 -2.6392 36 1 6.2422 -3.6864 -2.7734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753379434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:02 Heat of formation + Delta-G solvation = 5.023504 kcal Electronic energy + Delta-G solvation = -16674.147477 eV Core-core repulsion = 13966.455533 eV Total energy + Delta-G solvation = -2707.691944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07028 -39.41232 -37.23403 -34.91785 -33.77799 -32.04942 -29.54203 -28.06890 -26.39405 -26.05537 -24.58568 -21.52948 -20.95634 -19.30244 -18.74381 -17.92955 -16.96505 -16.87828 -16.55753 -15.76376 -15.41460 -15.33102 -14.99652 -14.52117 -14.34024 -14.03460 -13.61744 -13.29030 -13.11761 -12.96225 -12.78781 -12.48490 -12.44005 -12.06888 -11.93932 -11.81307 -11.76947 -11.28558 -11.01786 -10.80971 -9.90190 -9.86027 -8.95607 -7.90168 -5.25280 1.35133 1.46892 1.48758 1.57325 1.68826 2.32321 2.47100 3.30402 3.45596 3.73915 3.82924 4.01342 4.10955 4.28651 4.39038 4.50742 4.56936 4.68229 4.75505 4.78920 4.87703 4.91805 4.99020 5.10219 5.13061 5.17882 5.22850 5.25842 5.47855 5.73637 5.79118 5.90526 6.03550 6.68035 6.88820 7.32366 7.59632 8.58753 9.26831 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.005186 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.932204 B = 5397.362933 C = 5981.798714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 C -0.122 4.122 4 C -0.066 4.066 5 C -0.123 4.123 6 C 0.510 3.490 7 O -0.589 6.589 8 N -0.691 5.691 9 C 0.107 3.893 10 C 0.116 3.884 11 N -0.633 5.633 12 C -0.228 4.228 13 H 0.090 0.910 14 C -0.066 4.066 15 N -0.954 5.954 16 Si 0.980 3.020 17 H -0.282 1.282 18 H -0.299 1.299 19 H -0.268 1.268 20 C 0.135 3.865 21 H 0.111 0.889 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.410 0.590 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.022 0.978 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 6.114 5.637 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.135 4.135 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.163 4.163 6 C 0.298 3.702 7 O -0.469 6.469 8 N -0.340 5.340 9 C 0.000 4.000 10 C -0.009 4.009 11 N -0.360 5.360 12 C -0.355 4.355 13 H 0.108 0.892 14 C -0.259 4.259 15 N -0.603 5.603 16 Si 0.808 3.192 17 H -0.209 1.209 18 H -0.226 1.226 19 H -0.193 1.193 20 C 0.008 3.992 21 H 0.129 0.871 22 H 0.118 0.882 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.245 0.755 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.814 5.852 6.116 16.201 hybrid contribution 1.069 0.180 -1.111 1.553 sum -12.744 6.032 5.004 14.961 Atomic orbital electron populations 1.23890 0.94861 1.02650 1.01362 1.21777 0.95792 0.95334 1.00604 1.20923 1.00514 0.94082 1.02370 1.20318 1.00205 0.94900 0.94958 1.21622 1.01689 0.93169 0.99823 1.21339 0.78568 0.87512 0.82740 1.90641 1.59525 1.64176 1.32606 1.45520 1.55538 1.23293 1.09661 1.22257 0.92791 0.86273 0.98677 1.22878 0.91285 0.95465 0.91313 1.45986 1.26889 1.61226 1.01895 1.19360 1.05322 1.26853 0.84012 0.89199 1.25642 0.98082 1.01588 1.00564 1.70052 1.18736 1.43740 1.27774 0.85060 0.76637 0.78363 0.79129 1.20917 1.22628 1.19265 1.22535 0.93736 0.98613 0.84306 0.87069 0.88239 0.91491 0.90754 0.91663 0.91374 0.92159 0.87855 0.86555 0.75472 0.87788 0.91691 0.92070 0.94429 0.96017 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 13.90 67.79 0.94 -2.18 16 2 C -0.14 -2.55 5.31 -16.48 -0.09 -2.64 16 3 C -0.12 -2.02 10.12 71.24 0.72 -1.30 16 4 C -0.07 -1.53 4.67 29.85 0.14 -1.39 16 5 C -0.12 -2.89 5.68 29.85 0.17 -2.72 16 6 C 0.51 16.65 7.83 87.65 0.69 17.34 16 7 O -0.59 -23.36 15.57 -3.04 -0.05 -23.40 16 8 N -0.69 -23.59 5.39 -441.94 -2.38 -25.98 16 9 C 0.11 4.11 4.61 45.46 0.21 4.32 16 10 C 0.12 4.43 8.45 83.18 0.70 5.14 16 11 N -0.63 -31.46 3.78 -738.54 -2.79 -34.26 16 12 C -0.23 -12.34 10.75 84.03 0.90 -11.44 16 13 H 0.09 4.59 7.83 -2.91 -0.02 4.56 16 14 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 15 N -0.95 -57.68 11.51 21.65 0.25 -57.43 16 16 Si 0.98 44.81 29.55 68.60 2.03 46.84 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.14 6.59 7.21 83.18 0.60 7.19 16 21 H 0.11 1.47 7.83 -2.91 -0.02 1.45 16 22 H 0.10 1.56 7.99 -2.91 -0.02 1.54 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.00 7.78 -2.39 -0.02 0.98 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 27 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.12 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.41 13.17 8.76 -92.71 -0.81 12.36 16 31 H 0.10 3.85 7.45 -2.39 -0.02 3.84 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 Total: -1.00 -68.02 307.27 2.75 -65.27 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.24 Total: 19.86 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 5.45 Total: 9.10 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -4.93 Total: -117.66 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.02 2.75 -65.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753379434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.294 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds